Wall clock time and date at job start Tue Mar 9 2021 12:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42090 * 108.58046 * 2 1 4 4 O 1.42106 * 108.57304 * 228.97451 * 2 1 3 5 5 C 1.81402 * 101.92159 * 114.49077 * 2 1 3 6 6 C 1.52991 * 109.47238 * 179.97438 * 5 2 1 7 7 H 1.09003 * 112.84801 * 316.19412 * 6 5 2 8 8 C 1.53781 * 113.61611 * 87.50017 * 6 5 2 9 9 C 1.54049 * 87.08031 * 139.97702 * 8 6 5 10 10 H 1.09000 * 113.61076 * 89.06984 * 9 8 6 11 11 N 1.46494 * 113.69866 * 220.05561 * 9 8 6 12 12 C 1.34779 * 119.99525 * 252.42298 * 11 9 8 13 13 O 1.21514 * 120.00539 * 359.97438 * 12 11 9 14 14 C 1.48175 * 119.99785 * 180.02562 * 12 11 9 15 15 N 1.32717 * 119.72065 * 359.72417 * 14 12 11 16 16 C 1.31521 * 121.64036 * 179.75832 * 15 14 12 17 17 C 1.38554 * 120.90527 * 0.51709 * 16 15 14 18 18 C 1.50701 * 120.32819 * 179.72304 * 17 16 15 19 19 O 1.42895 * 109.47314 * 245.02687 * 18 17 16 20 20 Si 1.86306 * 109.46844 * 5.02760 * 18 17 16 21 21 C 1.38628 * 119.35080 * 359.75176 * 17 16 15 22 22 C 1.38585 * 118.48705 * 359.97438 * 21 17 16 23 23 C 1.53781 * 113.61529 * 184.99823 * 6 5 2 24 24 H 1.09008 * 109.46589 * 305.51561 * 1 2 3 25 25 H 1.08996 * 109.47107 * 65.50666 * 1 2 3 26 26 H 1.08995 * 109.47335 * 185.51323 * 1 2 3 27 27 H 1.08997 * 109.46843 * 59.99324 * 5 2 1 28 28 H 1.09002 * 109.46745 * 299.99847 * 5 2 1 29 29 H 1.09005 * 113.61471 * 254.53285 * 8 6 5 30 30 H 1.08996 * 113.61178 * 25.34627 * 8 6 5 31 31 H 0.97000 * 120.00537 * 72.42383 * 11 9 8 32 32 H 1.08003 * 119.54700 * 180.27233 * 16 15 14 33 33 H 1.09004 * 109.47213 * 125.02581 * 18 17 16 34 34 H 0.96706 * 114.00447 * 179.97438 * 19 18 17 35 35 H 1.48505 * 109.99664 * 178.67928 * 20 18 17 36 36 H 1.48500 * 109.99873 * 299.99630 * 20 18 17 37 37 H 1.08005 * 120.75704 * 180.02562 * 21 17 16 38 38 H 1.08005 * 120.47033 * 179.97438 * 22 21 17 39 39 H 1.09002 * 113.61445 * 334.56787 * 23 6 5 40 40 H 1.09002 * 113.61408 * 105.38518 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3468 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7054 -0.8197 1.7979 7 1 4.2200 -1.1779 0.9062 8 6 4.3248 0.4528 2.3994 9 6 5.2306 -0.4757 3.2304 10 1 6.1624 -0.7391 2.7299 11 7 5.4320 -0.0224 4.6089 12 6 6.6218 0.4883 4.9831 13 8 7.5275 0.5724 4.1774 14 6 6.8258 0.9463 6.3775 15 7 5.8314 0.8561 7.2518 16 6 5.9723 1.2468 8.4997 17 6 7.1700 1.7806 8.9473 18 6 7.3152 2.2299 10.3785 19 8 7.5173 3.6440 10.4156 20 14 5.7694 1.7984 11.3246 21 6 8.2333 1.8979 8.0657 22 6 8.0580 1.4729 6.7583 23 6 4.1316 -1.5419 3.0870 24 1 -0.3633 0.5971 0.8366 25 1 -0.3633 0.4260 -0.9351 26 1 -0.3634 -1.0229 0.0987 27 1 1.7610 -1.7370 1.6664 28 1 1.7611 -0.1172 2.4042 29 1 4.8684 1.0587 1.6744 30 1 3.6270 1.0362 3.0000 31 1 4.7092 -0.0898 5.2522 32 1 5.1418 1.1539 9.1839 33 1 8.1704 1.7286 10.8317 34 1 7.6186 4.0036 11.3076 35 1 5.9124 2.2076 12.7450 36 1 4.5960 2.4757 10.7166 37 1 9.1772 2.3103 8.3905 38 1 8.8648 1.5498 6.0445 39 1 3.3813 -1.5046 3.8768 40 1 4.5178 -2.5469 2.9171 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:37 Heat of formation + Delta-G solvation = -72.966586 kcal Electronic energy + Delta-G solvation = -24847.866585 eV Core-core repulsion = 20950.645896 eV Total energy + Delta-G solvation = -3897.220688 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93446 -40.84913 -39.43354 -37.95863 -37.94732 -36.98839 -35.10273 -33.80490 -33.03438 -31.04423 -30.11369 -27.89882 -26.74595 -25.06695 -24.64510 -23.10475 -21.79314 -20.92439 -19.78631 -19.15569 -18.66399 -18.27201 -17.73873 -17.30513 -16.99793 -16.87790 -16.64769 -16.37274 -16.25145 -15.99059 -15.49334 -15.29624 -14.86066 -14.45659 -14.32525 -14.06853 -14.01570 -13.94700 -13.89844 -13.60847 -13.45576 -13.21933 -13.05359 -12.99020 -12.63934 -12.54371 -12.13225 -12.03461 -11.93605 -11.53015 -11.41510 -11.07803 -11.06474 -10.79433 -10.53689 -10.33955 -10.05878 -4.92475 -0.89092 -0.61365 0.06824 1.24191 1.50290 1.61043 1.92441 1.95139 1.95727 2.60839 2.77542 2.92488 3.13078 3.27253 3.36929 3.44148 3.60258 3.64360 3.69260 3.75020 3.79187 3.89039 4.05995 4.10672 4.16237 4.19479 4.33999 4.38079 4.53686 4.57265 4.72186 4.72843 4.80917 4.88432 4.95151 4.98657 4.99439 5.03450 5.17211 5.36168 5.49483 6.26199 6.54324 6.60381 7.03309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.407 3.593 3 O -0.989 6.989 4 O -0.994 6.994 5 C -0.580 4.580 6 C -0.109 4.109 7 H 0.100 0.900 8 C -0.159 4.159 9 C 0.107 3.893 10 H 0.101 0.899 11 N -0.686 5.686 12 C 0.568 3.432 13 O -0.569 6.569 14 C 0.062 3.938 15 N -0.456 5.456 16 C 0.100 3.900 17 C -0.104 4.104 18 C -0.084 4.084 19 O -0.557 6.557 20 Si 0.765 3.235 21 C -0.054 4.054 22 C -0.117 4.117 23 C -0.111 4.111 24 H 0.153 0.847 25 H 0.127 0.873 26 H 0.154 0.846 27 H 0.172 0.828 28 H 0.165 0.835 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.422 0.578 32 H 0.185 0.815 33 H 0.109 0.891 34 H 0.400 0.600 35 H -0.282 1.282 36 H -0.290 1.290 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.119 0.881 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 -4.657 9.331 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.597 3.403 3 O -0.986 6.986 4 O -0.991 6.991 5 C -0.711 4.711 6 C -0.129 4.129 7 H 0.118 0.882 8 C -0.198 4.198 9 C 0.002 3.998 10 H 0.119 0.881 11 N -0.336 5.336 12 C 0.354 3.646 13 O -0.447 6.447 14 C -0.075 4.075 15 N -0.168 5.168 16 C -0.060 4.060 17 C -0.106 4.106 18 C -0.193 4.193 19 O -0.368 6.368 20 Si 0.669 3.331 21 C -0.080 4.080 22 C -0.138 4.138 23 C -0.150 4.150 24 H 0.171 0.829 25 H 0.145 0.855 26 H 0.172 0.828 27 H 0.190 0.810 28 H 0.183 0.817 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.261 0.739 32 H 0.201 0.799 33 H 0.126 0.874 34 H 0.251 0.749 35 H -0.209 1.209 36 H -0.217 1.217 37 H 0.180 0.820 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.809 -4.425 7.555 10.507 hybrid contribution 0.814 1.487 1.097 2.019 sum -4.995 -2.938 8.652 10.414 Atomic orbital electron populations 1.30132 1.22521 1.13841 1.12995 1.07792 0.79733 0.74427 0.78379 1.93554 1.80782 1.36829 1.87473 1.93551 1.80983 1.67686 1.56886 1.30141 1.03257 1.16434 1.21306 1.22082 0.92430 0.98283 1.00069 0.88161 1.23802 0.99518 0.96912 0.99528 1.22711 0.98966 0.96583 0.81499 0.88113 1.45739 1.13870 1.61145 1.12876 1.18154 0.83043 0.77251 0.86173 1.90788 1.43520 1.57065 1.53369 1.21090 0.91875 1.00791 0.93766 1.67504 1.30966 1.15192 1.03095 1.22991 0.96563 0.94579 0.91863 1.20794 0.94787 0.98326 0.96680 1.24957 1.13213 0.84512 0.96629 1.86537 1.94711 1.20250 1.35321 0.94164 0.73426 0.90182 0.75316 1.21757 1.00271 0.94443 0.91529 1.22289 0.97879 0.96035 0.97631 1.23337 0.96894 0.98146 0.96589 0.82875 0.85481 0.82763 0.80982 0.81660 0.92184 0.87593 0.73912 0.79851 0.87364 0.74869 1.20910 1.21748 0.82008 0.83334 0.86248 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.70 10.62 113.37 1.20 7.90 16 2 S 2.41 -5.70 5.35 -56.49 -0.30 -6.01 16 3 O -0.99 -7.36 18.10 -127.37 -2.30 -9.66 16 4 O -0.99 -7.34 18.10 -127.37 -2.31 -9.65 16 5 C -0.58 5.91 5.64 71.98 0.41 6.32 16 6 C -0.11 0.42 3.66 -10.27 -0.04 0.38 16 7 H 0.10 -0.17 8.13 -2.39 -0.02 -0.19 16 8 C -0.16 -0.09 7.44 31.21 0.23 0.14 16 9 C 0.11 0.08 4.25 45.61 0.19 0.27 16 10 H 0.10 0.51 7.47 -2.39 -0.02 0.49 16 11 N -0.69 -1.20 5.35 -442.16 -2.37 -3.56 16 12 C 0.57 4.62 7.81 86.88 0.68 5.30 16 13 O -0.57 -8.62 15.92 -3.76 -0.06 -8.68 16 14 C 0.06 0.35 6.75 41.91 0.28 0.63 16 15 N -0.46 -1.19 9.54 -184.91 -1.76 -2.96 16 16 C 0.10 -0.07 9.84 84.81 0.83 0.77 16 17 C -0.10 0.11 5.40 -19.70 -0.11 0.00 16 18 C -0.08 0.44 2.81 71.24 0.20 0.64 16 19 O -0.56 1.12 12.82 -148.98 -1.91 -0.79 16 20 Si 0.76 -5.11 29.87 68.60 2.05 -3.06 16 21 C -0.05 -0.02 9.83 22.45 0.22 0.21 16 22 C -0.12 -0.47 9.63 22.61 0.22 -0.26 16 23 C -0.11 0.72 7.39 31.12 0.23 0.95 16 24 H 0.15 -2.29 8.14 -2.39 -0.02 -2.31 16 25 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 26 H 0.15 -2.34 8.14 -2.39 -0.02 -2.36 16 27 H 0.17 -2.87 8.14 -2.39 -0.02 -2.89 16 28 H 0.17 -2.63 7.84 -2.39 -0.02 -2.65 16 29 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.11 -0.23 7.90 -2.39 -0.02 -0.25 16 31 H 0.42 -1.16 8.06 -92.71 -0.75 -1.91 16 32 H 0.19 -1.07 4.88 -2.91 -0.01 -1.08 16 33 H 0.11 -1.07 7.96 -2.39 -0.02 -1.09 16 34 H 0.40 -3.98 8.74 -74.05 -0.65 -4.62 16 35 H -0.28 0.60 7.11 99.48 0.71 1.31 16 36 H -0.29 -0.03 7.05 99.48 0.70 0.67 16 37 H 0.16 -0.58 8.06 -2.91 -0.02 -0.60 16 38 H 0.15 0.62 7.64 -2.91 -0.02 0.59 16 39 H 0.12 -1.34 8.08 -2.39 -0.02 -1.36 16 40 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 Total: 0.00 -36.20 353.89 -4.68 -40.88 By element: Atomic # 1 Polarization: -19.49 SS G_CDS: -0.28 Total: -19.77 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 4.56 Total: 23.25 kcal Atomic # 7 Polarization: -2.39 SS G_CDS: -4.13 Total: -6.52 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -6.58 Total: -28.78 kcal Atomic # 14 Polarization: -5.11 SS G_CDS: 2.05 Total: -3.06 kcal Atomic # 16 Polarization: -5.70 SS G_CDS: -0.30 Total: -6.01 kcal Total: -36.20 -4.68 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.086 kcal (2) G-P(sol) polarization free energy of solvation -36.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds