Wall clock time and date at job start Tue Mar 9 2021 12:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34657 * 124.85336 * 2 1 4 4 C 1.36762 * 108.39884 * 179.97438 * 3 2 1 5 5 C 1.47264 * 126.94202 * 179.97438 * 4 3 2 6 6 O 1.21625 * 120.00423 * 180.02562 * 5 4 3 7 7 N 1.34781 * 120.00109 * 0.03015 * 5 4 3 8 8 C 1.46495 * 120.00320 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.85229 * 23.80532 * 8 7 5 10 10 C 1.53787 * 113.61698 * 154.99912 * 8 7 5 11 11 C 1.53781 * 87.07987 * 140.06629 * 10 8 7 12 12 H 1.09002 * 113.61228 * 89.11929 * 11 10 8 13 13 C 1.52995 * 113.61293 * 219.93573 * 11 10 8 14 14 S 1.81401 * 109.47119 * 183.47250 * 13 11 10 15 15 C 1.81401 * 101.92215 * 179.97438 * 14 13 11 16 16 O 1.42098 * 108.57963 * 294.48800 * 14 13 11 17 17 O 1.42097 * 108.57927 * 65.51583 * 14 13 11 18 18 C 1.53779 * 113.69143 * 252.53744 * 8 7 5 19 19 C 1.46689 * 106.11757 * 0.22853 * 4 3 2 20 20 C 1.34483 * 106.32874 * 359.62056 * 19 4 3 21 21 C 1.50707 * 125.56965 * 180.08794 * 20 19 4 22 22 O 1.42899 * 109.47139 * 210.33668 * 21 20 19 23 23 Si 1.86298 * 109.46957 * 330.34046 * 21 20 19 24 24 H 1.08999 * 109.46988 * 90.02770 * 1 2 3 25 25 H 1.09001 * 109.47269 * 210.02490 * 1 2 3 26 26 H 1.09003 * 109.47465 * 330.02581 * 1 2 3 27 27 H 1.08004 * 125.79564 * 359.95824 * 3 2 1 28 28 H 0.97002 * 119.99641 * 359.97438 * 7 5 4 29 29 H 1.09005 * 113.61051 * 25.52033 * 10 8 7 30 30 H 1.08996 * 113.69311 * 254.62662 * 10 8 7 31 31 H 1.09005 * 109.47501 * 303.47224 * 13 11 10 32 32 H 1.09004 * 109.47494 * 63.47236 * 13 11 10 33 33 H 1.09004 * 109.46859 * 60.00086 * 15 14 13 34 34 H 1.09000 * 109.47216 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.47398 * 300.00632 * 15 14 13 36 36 H 1.09003 * 113.61775 * 105.46447 * 18 8 7 37 37 H 1.08996 * 113.61960 * 334.55173 * 18 8 7 38 38 H 1.07998 * 126.82881 * 179.75136 * 19 4 3 39 39 H 1.08998 * 109.46719 * 90.33497 * 21 20 19 40 40 H 0.96696 * 113.99750 * 180.02562 * 22 21 20 41 41 H 1.48498 * 109.99668 * 178.67941 * 23 21 20 42 42 H 1.48499 * 109.99855 * 299.99666 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1050 0.0000 4 6 3.5461 0.7176 0.0006 5 6 4.7283 1.5957 0.0003 6 8 5.8446 1.1128 0.0004 7 7 4.5733 2.9346 -0.0001 8 6 5.7493 3.8082 0.0002 9 1 6.6373 3.3227 -0.4048 10 6 5.4826 5.2006 -0.5957 11 6 6.3685 5.7645 0.5277 12 1 7.4257 5.8139 0.2669 13 6 5.8425 7.0708 1.1256 14 16 7.0188 7.6870 2.3615 15 6 6.2079 9.2089 2.9245 16 8 7.0603 6.7682 3.4446 17 8 8.2276 8.0363 1.7013 18 6 5.9929 4.5161 1.3434 19 6 3.5375 -0.7492 -0.0047 20 6 2.2447 -1.1198 0.0006 21 6 1.7397 -2.5397 0.0000 22 8 0.4814 -2.5974 -0.6747 23 14 2.9657 -3.6343 -0.8773 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.8766 2.1240 -0.0006 28 1 3.6831 3.3197 -0.0005 29 1 4.4403 5.5121 -0.5279 30 1 5.9014 5.3379 -1.5926 31 1 5.7254 7.8115 0.3345 32 1 4.8779 6.8907 1.6003 33 1 5.2325 8.9662 3.3461 34 1 6.8234 9.6882 3.6858 35 1 6.0804 9.8864 2.0802 36 1 6.8244 4.0997 1.9121 37 1 5.0902 4.6407 1.9414 38 1 4.3981 -1.4016 -0.0095 39 1 1.6172 -2.8821 1.0275 40 1 0.0960 -3.4834 -0.7130 41 1 2.4946 -5.0424 -0.8570 42 1 3.1417 -3.1778 -2.2794 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_13287730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:42 Heat of formation + Delta-G solvation = -53.403863 kcal Electronic energy + Delta-G solvation = -25614.947466 eV Core-core repulsion = 21691.263603 eV Total energy + Delta-G solvation = -3923.683864 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.39366 -40.91286 -39.09699 -37.93870 -37.92420 -36.97118 -34.68930 -33.73025 -31.79922 -31.01706 -30.28939 -27.68121 -26.80632 -26.29896 -24.56959 -22.82654 -21.24165 -20.69894 -20.15052 -19.86874 -18.60394 -18.52290 -17.85259 -17.40901 -17.09274 -16.93338 -16.79559 -16.43185 -16.11802 -15.82313 -15.51980 -15.46870 -14.69482 -14.58088 -14.45403 -14.33516 -14.24768 -13.88278 -13.67218 -13.54202 -13.46673 -13.36093 -13.21661 -13.05847 -13.00676 -12.93943 -12.77664 -12.54591 -12.13107 -12.03530 -12.01400 -11.50457 -11.20768 -10.88187 -10.67720 -9.92284 -9.51291 -9.13921 -4.92550 -1.06018 0.80653 1.04378 1.51614 1.59009 1.71417 1.87133 2.04947 2.32442 2.62462 2.71404 2.93416 2.99958 3.28859 3.32184 3.53334 3.62831 3.68755 3.74539 3.78363 3.82545 3.84998 3.96858 4.09820 4.17251 4.26785 4.31634 4.32872 4.49641 4.55738 4.59329 4.60012 4.67771 4.71087 4.90017 4.95243 5.03373 5.05855 5.24835 5.61755 5.76085 6.04023 6.15900 6.25132 6.70396 7.51709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.423 5.423 3 C 0.048 3.952 4 C -0.226 4.226 5 C 0.593 3.407 6 O -0.539 6.539 7 N -0.722 5.722 8 C 0.126 3.874 9 H 0.121 0.879 10 C -0.131 4.131 11 C -0.104 4.104 12 H 0.111 0.889 13 C -0.599 4.599 14 S 2.419 3.581 15 C -0.659 4.659 16 O -0.933 6.933 17 O -0.938 6.938 18 C -0.153 4.153 19 C -0.134 4.134 20 C 0.025 3.975 21 C -0.050 4.050 22 O -0.544 6.544 23 Si 0.707 3.293 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.170 0.830 28 H 0.397 0.603 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.159 0.841 39 H 0.080 0.920 40 H 0.384 0.616 41 H -0.258 1.258 42 H -0.253 1.253 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 2.292 0.252 8.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.098 5.098 3 C -0.088 4.088 4 C -0.236 4.236 5 C 0.382 3.618 6 O -0.416 6.416 7 N -0.373 5.373 8 C 0.021 3.979 9 H 0.139 0.861 10 C -0.170 4.170 11 C -0.123 4.123 12 H 0.129 0.871 13 C -0.728 4.728 14 S 2.600 3.400 15 C -0.808 4.808 16 O -0.930 6.930 17 O -0.935 6.935 18 C -0.191 4.191 19 C -0.158 4.158 20 C -0.084 4.084 21 C -0.159 4.159 22 O -0.351 6.351 23 Si 0.606 3.394 24 H 0.095 0.905 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.187 0.813 28 H 0.231 0.769 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.176 0.824 39 H 0.098 0.902 40 H 0.233 0.767 41 H -0.183 1.183 42 H -0.176 1.176 Dipole moment (debyes) X Y Z Total from point charges -6.646 1.630 -0.198 6.846 hybrid contribution -2.676 0.568 -0.277 2.750 sum -9.322 2.198 -0.475 9.590 Atomic orbital electron populations 1.22143 0.76259 1.04272 1.03910 1.43444 1.07105 1.04992 1.54211 1.21880 0.90127 0.91715 1.05115 1.20250 0.91453 0.93824 1.18082 1.17410 0.88061 0.81317 0.75027 1.90787 1.25776 1.75132 1.49916 1.45769 1.09137 1.05778 1.76616 1.22432 0.90380 0.88667 0.96467 0.86128 1.23373 1.00459 0.94614 0.98597 1.22088 1.01033 0.90785 0.98443 0.87104 1.30289 1.17052 1.08066 1.17374 1.07943 0.77434 0.77561 0.77015 1.30310 1.14985 1.22406 1.13143 1.93624 1.86414 1.60739 1.52207 1.93621 1.40425 1.83798 1.75691 1.23700 1.03354 0.94712 0.97379 1.21546 0.94492 0.93158 1.06578 1.19664 0.90207 0.86855 1.11710 1.24436 0.92876 0.97250 1.01359 1.86522 1.34242 1.34828 1.79547 0.94261 0.86313 0.76153 0.82677 0.90525 0.88815 0.90256 0.81317 0.76887 0.89141 0.89932 0.84602 0.84861 0.85378 0.85135 0.85365 0.89613 0.88939 0.82387 0.90223 0.76711 1.18284 1.17632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.16 9.81 59.84 0.59 0.43 16 2 N -0.42 -0.19 3.09 -119.90 -0.37 -0.56 16 3 C 0.05 -0.01 10.83 -16.85 -0.18 -0.19 16 4 C -0.23 -0.55 6.29 -103.35 -0.65 -1.20 16 5 C 0.59 2.12 7.81 -12.59 -0.10 2.02 16 6 O -0.54 -4.07 16.57 5.26 0.09 -3.98 16 7 N -0.72 0.04 5.35 -54.14 -0.29 -0.25 16 8 C 0.13 -0.01 4.24 -67.12 -0.28 -0.30 16 9 H 0.12 0.21 7.46 -51.93 -0.39 -0.18 16 10 C -0.13 0.35 7.39 -25.92 -0.19 0.16 16 11 C -0.10 0.19 3.65 -89.81 -0.33 -0.13 16 12 H 0.11 -0.17 8.14 -51.93 -0.42 -0.59 16 13 C -0.60 2.55 5.63 37.16 0.21 2.76 16 14 S 2.42 -3.68 5.36 -107.50 -0.58 -4.26 16 15 C -0.66 2.91 10.62 101.05 1.07 3.99 16 16 O -0.93 -2.38 18.10 -57.83 -1.05 -3.43 16 17 O -0.94 -2.63 18.10 -57.83 -1.05 -3.68 16 18 C -0.15 0.06 7.44 -25.92 -0.19 -0.13 16 19 C -0.13 -0.33 9.49 -37.50 -0.36 -0.68 16 20 C 0.02 0.03 6.18 -81.86 -0.51 -0.47 16 21 C -0.05 0.04 2.86 36.01 0.10 0.14 16 22 O -0.54 0.53 10.30 -35.23 -0.36 0.17 16 23 Si 0.71 -0.53 31.11 -169.99 -5.29 -5.81 16 24 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 25 H 0.09 -0.19 6.73 -51.93 -0.35 -0.54 16 26 H 0.08 -0.33 8.13 -51.93 -0.42 -0.75 16 27 H 0.17 -0.67 7.45 -52.48 -0.39 -1.06 16 28 H 0.40 -1.25 7.67 -40.82 -0.31 -1.56 16 29 H 0.09 -0.39 8.08 -51.93 -0.42 -0.81 16 30 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 31 H 0.14 -0.88 8.14 -51.92 -0.42 -1.30 16 32 H 0.13 -0.86 7.88 -51.92 -0.41 -1.27 16 33 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 34 H 0.13 -0.53 8.14 -51.92 -0.42 -0.95 16 35 H 0.13 -0.78 8.14 -51.93 -0.42 -1.20 16 36 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.09 -0.14 7.92 -51.93 -0.41 -0.55 16 38 H 0.16 0.21 6.88 -52.49 -0.36 -0.15 16 39 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 40 H 0.38 -1.80 8.74 45.56 0.40 -1.40 16 41 H -0.26 -0.16 7.11 56.52 0.40 0.24 16 42 H -0.25 -0.81 7.11 56.52 0.40 -0.41 16 LS Contribution 364.43 15.07 5.49 5.49 Total: 0.00 -15.49 364.43 -10.27 -25.77 By element: Atomic # 1 Polarization: -9.79 SS G_CDS: -6.06 Total: -15.84 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.82 Total: 6.39 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -0.66 Total: -0.82 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -2.37 Total: -10.91 kcal Atomic # 14 Polarization: -0.53 SS G_CDS: -5.29 Total: -5.81 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -0.58 Total: -4.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -15.49 -10.27 -25.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13287730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.635 kcal (2) G-P(sol) polarization free energy of solvation -15.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds