Wall clock time and date at job start Tue Mar 9 2021 12:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34657 * 124.85336 * 2 1 4 4 C 1.36762 * 108.39884 * 179.97438 * 3 2 1 5 5 C 1.47264 * 126.94202 * 179.97438 * 4 3 2 6 6 O 1.21625 * 120.00423 * 180.02562 * 5 4 3 7 7 N 1.34781 * 120.00109 * 0.03015 * 5 4 3 8 8 C 1.46495 * 120.00320 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.85229 * 23.80532 * 8 7 5 10 10 C 1.53787 * 113.61698 * 154.99912 * 8 7 5 11 11 C 1.53781 * 87.07987 * 140.06629 * 10 8 7 12 12 H 1.09002 * 113.61228 * 89.11929 * 11 10 8 13 13 C 1.52995 * 113.61293 * 219.93573 * 11 10 8 14 14 S 1.81401 * 109.47119 * 183.47250 * 13 11 10 15 15 C 1.81401 * 101.92215 * 179.97438 * 14 13 11 16 16 O 1.42098 * 108.57963 * 294.48800 * 14 13 11 17 17 O 1.42097 * 108.57927 * 65.51583 * 14 13 11 18 18 C 1.53779 * 113.69143 * 252.53744 * 8 7 5 19 19 C 1.46689 * 106.11757 * 0.22853 * 4 3 2 20 20 C 1.34483 * 106.32874 * 359.62056 * 19 4 3 21 21 C 1.50707 * 125.56965 * 180.08794 * 20 19 4 22 22 O 1.42899 * 109.47139 * 210.33668 * 21 20 19 23 23 Si 1.86298 * 109.46957 * 330.34046 * 21 20 19 24 24 H 1.08999 * 109.46988 * 90.02770 * 1 2 3 25 25 H 1.09001 * 109.47269 * 210.02490 * 1 2 3 26 26 H 1.09003 * 109.47465 * 330.02581 * 1 2 3 27 27 H 1.08004 * 125.79564 * 359.95824 * 3 2 1 28 28 H 0.97002 * 119.99641 * 359.97438 * 7 5 4 29 29 H 1.09005 * 113.61051 * 25.52033 * 10 8 7 30 30 H 1.08996 * 113.69311 * 254.62662 * 10 8 7 31 31 H 1.09005 * 109.47501 * 303.47224 * 13 11 10 32 32 H 1.09004 * 109.47494 * 63.47236 * 13 11 10 33 33 H 1.09004 * 109.46859 * 60.00086 * 15 14 13 34 34 H 1.09000 * 109.47216 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.47398 * 300.00632 * 15 14 13 36 36 H 1.09003 * 113.61775 * 105.46447 * 18 8 7 37 37 H 1.08996 * 113.61960 * 334.55173 * 18 8 7 38 38 H 1.07998 * 126.82881 * 179.75136 * 19 4 3 39 39 H 1.08998 * 109.46719 * 90.33497 * 21 20 19 40 40 H 0.96696 * 113.99750 * 180.02562 * 22 21 20 41 41 H 1.48498 * 109.99668 * 178.67941 * 23 21 20 42 42 H 1.48499 * 109.99855 * 299.99666 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1050 0.0000 4 6 3.5461 0.7176 0.0006 5 6 4.7283 1.5957 0.0003 6 8 5.8446 1.1128 0.0004 7 7 4.5733 2.9346 -0.0001 8 6 5.7493 3.8082 0.0002 9 1 6.6373 3.3227 -0.4048 10 6 5.4826 5.2006 -0.5957 11 6 6.3685 5.7645 0.5277 12 1 7.4257 5.8139 0.2669 13 6 5.8425 7.0708 1.1256 14 16 7.0188 7.6870 2.3615 15 6 6.2079 9.2089 2.9245 16 8 7.0603 6.7682 3.4446 17 8 8.2276 8.0363 1.7013 18 6 5.9929 4.5161 1.3434 19 6 3.5375 -0.7492 -0.0047 20 6 2.2447 -1.1198 0.0006 21 6 1.7397 -2.5397 0.0000 22 8 0.4814 -2.5974 -0.6747 23 14 2.9657 -3.6343 -0.8773 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3634 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.8766 2.1240 -0.0006 28 1 3.6831 3.3197 -0.0005 29 1 4.4403 5.5121 -0.5279 30 1 5.9014 5.3379 -1.5926 31 1 5.7254 7.8115 0.3345 32 1 4.8779 6.8907 1.6003 33 1 5.2325 8.9662 3.3461 34 1 6.8234 9.6882 3.6858 35 1 6.0804 9.8864 2.0802 36 1 6.8244 4.0997 1.9121 37 1 5.0902 4.6407 1.9414 38 1 4.3981 -1.4016 -0.0095 39 1 1.6172 -2.8821 1.0275 40 1 0.0960 -3.4834 -0.7130 41 1 2.4946 -5.0424 -0.8570 42 1 3.1417 -3.1778 -2.2794 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13287730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:41 Heat of formation + Delta-G solvation = -63.068565 kcal Electronic energy + Delta-G solvation = -25615.366559 eV Core-core repulsion = 21691.263603 eV Total energy + Delta-G solvation = -3924.102957 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.40490 -40.92770 -39.22149 -37.93805 -37.83999 -36.96436 -34.81886 -33.68948 -31.74785 -30.81741 -30.03164 -27.59425 -26.69324 -26.26903 -24.54213 -22.83172 -21.29175 -20.67122 -20.14109 -19.75878 -18.54034 -18.46516 -17.76420 -17.35385 -16.97049 -16.95760 -16.77066 -16.36823 -16.08755 -15.86540 -15.49452 -15.46826 -14.68301 -14.49968 -14.45961 -14.02208 -13.88559 -13.88067 -13.54103 -13.40202 -13.38201 -13.25108 -13.16330 -13.07739 -12.97947 -12.95758 -12.72339 -12.51643 -12.11978 -11.98762 -11.90932 -11.44037 -11.07727 -10.91332 -10.79453 -10.04683 -9.55125 -9.15068 -4.89882 -0.87149 0.75469 1.01646 1.49259 1.56254 1.87422 1.95438 2.05804 2.31493 2.55932 2.81270 3.13517 3.15396 3.42399 3.49646 3.67948 3.71543 3.82102 3.89214 3.98624 4.09562 4.12263 4.19841 4.30402 4.36909 4.40707 4.48794 4.50640 4.59865 4.76376 4.77109 4.81684 4.86830 4.95813 4.99192 5.01093 5.02217 5.08592 5.29412 5.60945 5.69833 6.01113 6.25204 6.50875 6.69271 7.38275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.428 5.428 3 C 0.070 3.930 4 C -0.261 4.261 5 C 0.587 3.413 6 O -0.596 6.596 7 N -0.703 5.703 8 C 0.112 3.888 9 H 0.090 0.910 10 C -0.110 4.110 11 C -0.111 4.111 12 H 0.095 0.905 13 C -0.578 4.578 14 S 2.405 3.595 15 C -0.642 4.642 16 O -0.988 6.988 17 O -0.996 6.996 18 C -0.157 4.157 19 C -0.163 4.163 20 C 0.014 3.986 21 C -0.044 4.044 22 O -0.553 6.553 23 Si 0.761 3.239 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.212 0.788 28 H 0.415 0.585 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.153 0.847 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.154 0.846 39 H 0.103 0.897 40 H 0.400 0.600 41 H -0.270 1.270 42 H -0.312 1.312 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 4.377 0.355 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.101 5.101 3 C -0.067 4.067 4 C -0.271 4.271 5 C 0.377 3.623 6 O -0.477 6.477 7 N -0.354 5.354 8 C 0.007 3.993 9 H 0.108 0.892 10 C -0.150 4.150 11 C -0.131 4.131 12 H 0.113 0.887 13 C -0.709 4.709 14 S 2.594 3.406 15 C -0.795 4.795 16 O -0.985 6.985 17 O -0.994 6.994 18 C -0.196 4.196 19 C -0.187 4.187 20 C -0.095 4.095 21 C -0.154 4.154 22 O -0.363 6.363 23 Si 0.666 3.334 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.229 0.771 28 H 0.253 0.747 29 H 0.141 0.859 30 H 0.104 0.896 31 H 0.189 0.811 32 H 0.187 0.813 33 H 0.173 0.827 34 H 0.145 0.855 35 H 0.172 0.828 36 H 0.073 0.927 37 H 0.129 0.871 38 H 0.171 0.829 39 H 0.121 0.879 40 H 0.252 0.748 41 H -0.196 1.196 42 H -0.240 1.240 Dipole moment (debyes) X Y Z Total from point charges -10.387 3.708 -0.059 11.029 hybrid contribution -1.588 -0.066 -0.382 1.635 sum -11.975 3.643 -0.441 12.525 Atomic orbital electron populations 1.22326 0.74532 1.05686 1.04246 1.43727 1.08198 1.04759 1.53428 1.22427 0.88937 0.93246 1.02087 1.20292 0.92298 0.93756 1.20722 1.17732 0.87702 0.82475 0.74350 1.90750 1.27832 1.76262 1.52891 1.45597 1.10154 1.04594 1.75074 1.22461 0.89650 0.89803 0.97387 0.89222 1.23337 1.02005 0.91507 0.98103 1.22089 1.00860 0.91526 0.98632 0.88668 1.30122 1.16703 1.07166 1.16922 1.07850 0.77756 0.78207 0.76744 1.30130 1.15466 1.19771 1.14087 1.93556 1.87550 1.63055 1.54361 1.93547 1.44557 1.84718 1.76534 1.23751 1.03077 0.95628 0.97150 1.21751 0.95259 0.93853 1.07815 1.19899 0.90113 0.88171 1.11350 1.24343 0.92683 0.95895 1.02451 1.86480 1.33842 1.36438 1.79587 0.93496 0.85829 0.74746 0.79370 0.90649 0.88833 0.87531 0.77148 0.74680 0.85860 0.89592 0.81149 0.81323 0.82721 0.85539 0.82838 0.92678 0.87135 0.82896 0.87923 0.74813 1.19613 1.23969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.46 9.81 127.77 1.25 0.79 16 2 N -0.43 0.16 3.09 -533.25 -1.65 -1.49 16 3 C 0.07 -0.13 10.83 83.91 0.91 0.78 16 4 C -0.26 -1.49 6.29 -19.04 -0.12 -1.61 16 5 C 0.59 5.28 7.81 86.62 0.68 5.96 16 6 O -0.60 -11.28 16.57 -4.11 -0.07 -11.35 16 7 N -0.70 0.01 5.35 -443.45 -2.37 -2.36 16 8 C 0.11 0.09 4.24 45.52 0.19 0.29 16 9 H 0.09 0.64 7.46 -2.39 -0.02 0.62 16 10 C -0.11 0.76 7.39 31.12 0.23 0.99 16 11 C -0.11 0.44 3.65 -10.27 -0.04 0.40 16 12 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 13 C -0.58 6.28 5.63 71.98 0.41 6.69 16 14 S 2.41 -6.37 5.36 -56.49 -0.30 -6.67 16 15 C -0.64 7.05 10.62 113.37 1.20 8.25 16 16 O -0.99 -6.91 18.10 -127.37 -2.31 -9.21 16 17 O -1.00 -7.56 18.10 -127.37 -2.30 -9.86 16 18 C -0.16 -0.03 7.44 31.12 0.23 0.20 16 19 C -0.16 -1.09 9.49 23.62 0.22 -0.86 16 20 C 0.01 0.04 6.18 40.98 0.25 0.29 16 21 C -0.04 0.08 2.86 71.24 0.20 0.28 16 22 O -0.55 1.53 10.30 -148.98 -1.53 -0.01 16 23 Si 0.76 -0.04 31.11 68.60 2.13 2.10 16 24 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.09 -0.56 6.73 -2.39 -0.02 -0.57 16 26 H 0.11 -1.25 8.13 -2.39 -0.02 -1.27 16 27 H 0.21 -2.47 7.45 -2.91 -0.02 -2.49 16 28 H 0.42 -3.47 7.67 -92.71 -0.71 -4.18 16 29 H 0.12 -1.62 8.08 -2.38 -0.02 -1.64 16 30 H 0.09 -0.59 8.14 -2.39 -0.02 -0.60 16 31 H 0.17 -2.93 8.14 -2.39 -0.02 -2.94 16 32 H 0.17 -2.95 7.88 -2.39 -0.02 -2.97 16 33 H 0.15 -2.46 8.14 -2.39 -0.02 -2.48 16 34 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 35 H 0.15 -2.40 8.14 -2.39 -0.02 -2.42 16 36 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.11 -0.43 7.92 -2.39 -0.02 -0.45 16 38 H 0.15 0.91 6.88 -2.91 -0.02 0.89 16 39 H 0.10 -0.62 7.96 -2.39 -0.02 -0.63 16 40 H 0.40 -4.15 8.74 -74.06 -0.65 -4.80 16 41 H -0.27 -0.51 7.11 99.48 0.71 0.20 16 42 H -0.31 -3.09 7.11 99.48 0.71 -2.39 16 Total: 0.00 -42.91 364.43 -3.04 -45.95 By element: Atomic # 1 Polarization: -29.29 SS G_CDS: -0.27 Total: -29.56 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 5.63 Total: 22.46 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -4.02 Total: -3.85 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -6.21 Total: -30.43 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: 2.13 Total: 2.10 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -0.30 Total: -6.67 kcal Total: -42.91 -3.04 -45.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13287730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.118 kcal (2) G-P(sol) polarization free energy of solvation -42.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds