Wall clock time and date at job start Tue Mar 9 2021 12:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42098 * 108.58159 * 2 1 4 4 O 1.42107 * 108.57585 * 228.97619 * 2 1 3 5 5 C 1.81397 * 101.92501 * 114.49079 * 2 1 3 6 6 C 1.52997 * 109.47310 * 180.02562 * 5 2 1 7 7 H 1.08995 * 112.85041 * 316.18909 * 6 5 2 8 8 C 1.53949 * 113.74398 * 87.40109 * 6 5 2 9 9 C 1.53783 * 87.02014 * 139.93991 * 8 6 5 10 10 H 1.09001 * 113.60979 * 89.22919 * 9 8 6 11 11 N 1.46499 * 113.61722 * 220.04588 * 9 8 6 12 12 C 1.34784 * 119.99971 * 254.13839 * 11 9 8 13 13 O 1.21583 * 119.99855 * 359.72712 * 12 11 9 14 14 C 1.47530 * 119.99635 * 179.97438 * 12 11 9 15 15 C 1.40139 * 120.18966 * 179.97438 * 14 12 11 16 16 O 1.35659 * 120.15026 * 359.97438 * 15 14 12 17 17 C 1.38708 * 119.70239 * 180.02562 * 15 14 12 18 18 C 1.38060 * 120.08243 * 0.02562 * 17 15 14 19 19 C 1.50697 * 119.80339 * 179.97438 * 18 17 15 20 20 O 1.42899 * 109.47280 * 65.00273 * 19 18 17 21 21 Si 1.86298 * 109.47094 * 185.00223 * 19 18 17 22 22 C 1.38544 * 120.39133 * 359.95803 * 18 17 15 23 23 C 1.37797 * 120.29794 * 359.75659 * 22 18 17 24 24 C 1.53781 * 87.17424 * 334.63887 * 9 8 6 25 25 H 1.09000 * 109.47191 * 305.50997 * 1 2 3 26 26 H 1.09006 * 109.47597 * 65.50989 * 1 2 3 27 27 H 1.08997 * 109.47273 * 185.50897 * 1 2 3 28 28 H 1.09003 * 109.47092 * 59.99396 * 5 2 1 29 29 H 1.09011 * 109.46786 * 299.99884 * 5 2 1 30 30 H 1.09003 * 113.61733 * 25.42115 * 8 6 5 31 31 H 1.09001 * 113.66526 * 254.47213 * 8 6 5 32 32 H 0.96999 * 119.99984 * 74.13687 * 11 9 8 33 33 H 0.96694 * 114.00003 * 89.99768 * 16 15 14 34 34 H 1.08003 * 119.95811 * 180.02562 * 17 15 14 35 35 H 1.09001 * 109.46985 * 304.99936 * 19 18 17 36 36 H 0.96704 * 113.99746 * 180.02562 * 20 19 18 37 37 H 1.48503 * 109.99890 * 299.99927 * 21 19 18 38 38 H 1.48499 * 110.00311 * 61.31775 * 21 19 18 39 39 H 1.07997 * 119.85042 * 180.02562 * 22 18 17 40 40 H 1.07997 * 120.04339 * 180.28079 * 23 22 18 41 41 H 1.08999 * 113.61210 * 139.93665 * 24 9 8 42 42 H 1.08996 * 113.61136 * 270.84116 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8842 -1.0163 5 6 2.1888 -0.7357 1.6151 6 6 3.7055 -0.8185 1.7983 7 1 4.2206 -1.1761 0.9068 8 6 4.3278 0.4553 2.3985 9 6 5.2297 -0.4732 3.2288 10 1 6.1620 -0.7370 2.7295 11 7 5.4313 -0.0176 4.6064 12 6 6.6107 0.5233 4.9716 13 8 7.5088 0.6284 4.1589 14 6 6.8135 0.9826 6.3588 15 6 8.0382 1.5450 6.7430 16 8 9.0437 1.6694 5.8409 17 6 8.2181 1.9731 8.0501 18 6 7.1943 1.8445 8.9674 19 6 7.3968 2.3111 10.3860 20 8 7.5782 3.7284 10.3999 21 14 5.9022 1.8662 11.4052 22 6 5.9820 1.2893 8.5915 23 6 5.7840 0.8642 7.2957 24 6 4.1317 -1.5406 3.0874 25 1 -0.3633 0.5969 0.8365 26 1 -0.3634 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 1.7610 -1.7370 1.6664 29 1 1.7610 -0.1171 2.4042 30 1 3.6315 1.0398 3.0000 31 1 4.8728 1.0596 1.6733 32 1 4.7161 -0.1051 5.2558 33 1 9.0370 2.5066 5.3573 34 1 9.1601 2.4075 8.3505 35 1 8.2793 1.8276 10.8050 36 1 7.7147 4.0988 11.2827 37 1 4.6921 2.5192 10.8442 38 1 5.7211 0.3925 11.4249 39 1 5.1870 1.1933 9.3161 40 1 4.8357 0.4362 7.0060 41 1 4.5188 -2.5453 2.9175 42 1 3.3818 -1.5028 3.8775 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:12 Heat of formation + Delta-G solvation = -113.256595 kcal Electronic energy + Delta-G solvation = -27182.916342 eV Core-core repulsion = 23030.692266 eV Total energy + Delta-G solvation = -4152.224075 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.74735 -40.70758 -39.23330 -38.30067 -37.98928 -37.25082 -37.02324 -34.93300 -32.96935 -31.21188 -31.17397 -30.38279 -27.61896 -26.92519 -24.61448 -23.95556 -22.93946 -21.56210 -21.02178 -19.93166 -19.25258 -18.67074 -18.56012 -18.03689 -17.69171 -17.23585 -17.13706 -16.65592 -16.54181 -16.39155 -16.08665 -15.87304 -15.51805 -15.32427 -14.78356 -14.72506 -14.38906 -14.29323 -14.21044 -14.04608 -13.78876 -13.64909 -13.46826 -13.25549 -13.07876 -12.99233 -12.97161 -12.71158 -12.53667 -12.23004 -12.14790 -12.08812 -11.76171 -11.61454 -11.29866 -10.76429 -10.51749 -10.18218 -10.04891 -9.82379 -5.09680 -1.11197 -0.44520 0.05498 1.11689 1.50390 1.66091 1.72679 1.81719 2.02405 2.51070 2.55993 2.87289 3.07391 3.17444 3.18826 3.22857 3.42155 3.51364 3.55527 3.64342 3.66553 3.70474 3.74537 3.88892 3.97743 4.03830 4.14365 4.17118 4.24366 4.48626 4.50222 4.55419 4.56536 4.58882 4.64838 4.78655 4.88552 4.93812 5.02939 5.11623 5.15809 5.43743 5.47684 6.40823 6.46519 6.69105 7.19004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.419 3.581 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.600 4.600 6 C -0.102 4.102 7 H 0.111 0.889 8 C -0.152 4.152 9 C 0.123 3.877 10 H 0.121 0.879 11 N -0.719 5.719 12 C 0.561 3.439 13 O -0.514 6.514 14 C -0.165 4.165 15 C 0.176 3.824 16 O -0.475 6.475 17 C -0.125 4.125 18 C -0.031 4.031 19 C -0.079 4.079 20 O -0.544 6.544 21 Si 0.688 3.312 22 C -0.143 4.143 23 C -0.063 4.063 24 C -0.131 4.131 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.399 0.601 33 H 0.399 0.601 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.385 0.615 37 H -0.249 1.249 38 H -0.253 1.253 39 H 0.127 0.873 40 H 0.133 0.867 41 H 0.084 0.916 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.636 -0.591 8.085 9.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.601 3.399 3 O -0.930 6.930 4 O -0.935 6.935 5 C -0.729 4.729 6 C -0.122 4.122 7 H 0.129 0.871 8 C -0.191 4.191 9 C 0.019 3.981 10 H 0.139 0.861 11 N -0.371 5.371 12 C 0.348 3.652 13 O -0.390 6.390 14 C -0.169 4.169 15 C 0.129 3.871 16 O -0.287 6.287 17 C -0.144 4.144 18 C -0.031 4.031 19 C -0.189 4.189 20 O -0.351 6.351 21 Si 0.589 3.411 22 C -0.160 4.160 23 C -0.082 4.082 24 C -0.170 4.170 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.234 0.766 33 H 0.258 0.742 34 H 0.160 0.840 35 H 0.098 0.902 36 H 0.233 0.767 37 H -0.173 1.173 38 H -0.178 1.178 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.103 0.897 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.112 -1.226 6.360 8.251 hybrid contribution -0.935 -0.026 0.377 1.009 sum -6.048 -1.252 6.736 9.139 Atomic orbital electron populations 1.30302 1.26895 1.11586 1.12008 1.07933 0.78286 0.75989 0.77710 1.93624 1.78818 1.34219 1.86362 1.93625 1.79011 1.67088 1.53760 1.30299 1.04779 1.14166 1.23639 1.22097 0.90784 0.99362 0.99959 0.87052 1.23730 0.99228 0.96325 0.99821 1.22509 0.98835 0.94779 0.82022 0.86076 1.45879 1.15513 1.63440 1.12312 1.18047 0.82319 0.77718 0.87126 1.90838 1.41427 1.54246 1.52449 1.20410 0.95045 1.06951 0.94506 1.18485 0.85746 0.93755 0.89108 1.84749 1.46652 1.43366 1.53892 1.21339 1.00325 1.00511 0.92216 1.19422 0.93257 0.96130 0.94292 1.24785 1.10792 0.85792 0.97571 1.86487 1.95719 1.18283 1.34563 0.95065 0.76778 0.81198 0.88084 1.20819 0.96747 1.01960 0.96500 1.21070 0.97778 0.97072 0.92297 1.23370 0.97818 0.99034 0.96780 0.85353 0.85084 0.85331 0.84507 0.84834 0.88895 0.89531 0.76562 0.74172 0.83975 0.90227 0.76658 1.17345 1.17771 0.85547 0.84931 0.89746 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.95 10.62 101.05 1.07 4.02 16 2 S 2.42 -3.93 5.35 -107.50 -0.58 -4.50 16 3 O -0.93 -2.31 18.10 -57.83 -1.05 -3.36 16 4 O -0.94 -2.53 18.10 -57.83 -1.05 -3.58 16 5 C -0.60 2.61 5.65 37.16 0.21 2.82 16 6 C -0.10 0.21 3.65 -89.72 -0.33 -0.12 16 7 H 0.11 -0.18 8.13 -51.93 -0.42 -0.61 16 8 C -0.15 0.09 7.45 -25.83 -0.19 -0.10 16 9 C 0.12 -0.04 4.21 -67.12 -0.28 -0.32 16 10 H 0.12 0.17 7.50 -51.93 -0.39 -0.22 16 11 N -0.72 0.13 5.31 -54.06 -0.29 -0.15 16 12 C 0.56 1.78 7.76 -12.47 -0.10 1.69 16 13 O -0.51 -3.46 14.78 -16.59 -0.25 -3.70 16 14 C -0.17 -0.38 5.89 -104.85 -0.62 -0.99 16 15 C 0.18 0.52 6.72 -38.69 -0.26 0.26 16 16 O -0.48 -1.67 11.58 -40.56 -0.47 -2.14 16 17 C -0.13 -0.24 9.60 -39.47 -0.38 -0.62 16 18 C -0.03 -0.04 5.39 -104.58 -0.56 -0.60 16 19 C -0.08 0.09 2.78 36.00 0.10 0.19 16 20 O -0.54 0.50 12.81 -35.23 -0.45 0.05 16 21 Si 0.69 -1.66 29.83 -169.99 -5.07 -6.73 16 22 C -0.14 -0.10 8.64 -39.63 -0.34 -0.45 16 23 C -0.06 -0.01 9.54 -39.20 -0.37 -0.38 16 24 C -0.13 0.37 7.39 -25.92 -0.19 0.17 16 25 H 0.13 -0.79 8.14 -51.92 -0.42 -1.22 16 26 H 0.13 -0.54 8.14 -51.92 -0.42 -0.96 16 27 H 0.13 -0.79 8.14 -51.93 -0.42 -1.21 16 28 H 0.14 -0.90 8.14 -51.92 -0.42 -1.32 16 29 H 0.13 -0.87 7.86 -51.92 -0.41 -1.28 16 30 H 0.09 -0.16 7.91 -51.93 -0.41 -0.57 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.40 -1.21 6.74 -40.82 -0.28 -1.49 16 33 H 0.40 -0.04 9.06 45.56 0.41 0.37 16 34 H 0.14 0.13 8.06 -52.48 -0.42 -0.29 16 35 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 36 H 0.39 -2.28 8.74 45.56 0.40 -1.88 16 37 H -0.25 -0.10 7.04 56.52 0.40 0.30 16 38 H -0.25 0.01 7.11 56.52 0.40 0.41 16 39 H 0.13 -0.04 4.83 -52.49 -0.25 -0.30 16 40 H 0.13 -0.43 6.40 -52.49 -0.34 -0.76 16 41 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 42 H 0.09 -0.41 8.07 -51.93 -0.42 -0.83 16 LS Contribution 365.40 15.07 5.51 5.51 Total: 0.00 -15.91 365.40 -10.61 -26.51 By element: Atomic # 1 Polarization: -8.81 SS G_CDS: -4.68 Total: -13.49 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.24 Total: 5.58 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -0.29 Total: -0.15 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -3.26 Total: -12.73 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -5.07 Total: -6.73 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -0.58 Total: -4.50 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -15.91 -10.61 -26.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.745 kcal (2) G-P(sol) polarization free energy of solvation -15.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds