Wall clock time and date at job start Tue Mar 9 2021 12:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42098 * 108.58159 * 2 1 4 4 O 1.42107 * 108.57585 * 228.97619 * 2 1 3 5 5 C 1.81397 * 101.92501 * 114.49079 * 2 1 3 6 6 C 1.52997 * 109.47310 * 180.02562 * 5 2 1 7 7 H 1.08995 * 112.85041 * 316.18909 * 6 5 2 8 8 C 1.53949 * 113.74398 * 87.40109 * 6 5 2 9 9 C 1.53783 * 87.02014 * 139.93991 * 8 6 5 10 10 H 1.09001 * 113.60979 * 89.22919 * 9 8 6 11 11 N 1.46499 * 113.61722 * 220.04588 * 9 8 6 12 12 C 1.34784 * 119.99971 * 254.13839 * 11 9 8 13 13 O 1.21583 * 119.99855 * 359.72712 * 12 11 9 14 14 C 1.47530 * 119.99635 * 179.97438 * 12 11 9 15 15 C 1.40139 * 120.18966 * 179.97438 * 14 12 11 16 16 O 1.35659 * 120.15026 * 359.97438 * 15 14 12 17 17 C 1.38708 * 119.70239 * 180.02562 * 15 14 12 18 18 C 1.38060 * 120.08243 * 0.02562 * 17 15 14 19 19 C 1.50697 * 119.80339 * 179.97438 * 18 17 15 20 20 O 1.42899 * 109.47280 * 65.00273 * 19 18 17 21 21 Si 1.86298 * 109.47094 * 185.00223 * 19 18 17 22 22 C 1.38544 * 120.39133 * 359.95803 * 18 17 15 23 23 C 1.37797 * 120.29794 * 359.75659 * 22 18 17 24 24 C 1.53781 * 87.17424 * 334.63887 * 9 8 6 25 25 H 1.09000 * 109.47191 * 305.50997 * 1 2 3 26 26 H 1.09006 * 109.47597 * 65.50989 * 1 2 3 27 27 H 1.08997 * 109.47273 * 185.50897 * 1 2 3 28 28 H 1.09003 * 109.47092 * 59.99396 * 5 2 1 29 29 H 1.09011 * 109.46786 * 299.99884 * 5 2 1 30 30 H 1.09003 * 113.61733 * 25.42115 * 8 6 5 31 31 H 1.09001 * 113.66526 * 254.47213 * 8 6 5 32 32 H 0.96999 * 119.99984 * 74.13687 * 11 9 8 33 33 H 0.96694 * 114.00003 * 89.99768 * 16 15 14 34 34 H 1.08003 * 119.95811 * 180.02562 * 17 15 14 35 35 H 1.09001 * 109.46985 * 304.99936 * 19 18 17 36 36 H 0.96704 * 113.99746 * 180.02562 * 20 19 18 37 37 H 1.48503 * 109.99890 * 299.99927 * 21 19 18 38 38 H 1.48499 * 110.00311 * 61.31775 * 21 19 18 39 39 H 1.07997 * 119.85042 * 180.02562 * 22 18 17 40 40 H 1.07997 * 120.04339 * 180.28079 * 23 22 18 41 41 H 1.08999 * 113.61210 * 139.93665 * 24 9 8 42 42 H 1.08996 * 113.61136 * 270.84116 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8842 -1.0163 5 6 2.1888 -0.7357 1.6151 6 6 3.7055 -0.8185 1.7983 7 1 4.2206 -1.1761 0.9068 8 6 4.3278 0.4553 2.3985 9 6 5.2297 -0.4732 3.2288 10 1 6.1620 -0.7370 2.7295 11 7 5.4313 -0.0176 4.6064 12 6 6.6107 0.5233 4.9716 13 8 7.5088 0.6284 4.1589 14 6 6.8135 0.9826 6.3588 15 6 8.0382 1.5450 6.7430 16 8 9.0437 1.6694 5.8409 17 6 8.2181 1.9731 8.0501 18 6 7.1943 1.8445 8.9674 19 6 7.3968 2.3111 10.3860 20 8 7.5782 3.7284 10.3999 21 14 5.9022 1.8662 11.4052 22 6 5.9820 1.2893 8.5915 23 6 5.7840 0.8642 7.2957 24 6 4.1317 -1.5406 3.0874 25 1 -0.3633 0.5969 0.8365 26 1 -0.3634 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 1.7610 -1.7370 1.6664 29 1 1.7610 -0.1171 2.4042 30 1 3.6315 1.0398 3.0000 31 1 4.8728 1.0596 1.6733 32 1 4.7161 -0.1051 5.2558 33 1 9.0370 2.5066 5.3573 34 1 9.1601 2.4075 8.3505 35 1 8.2793 1.8276 10.8050 36 1 7.7147 4.0988 11.2827 37 1 4.6921 2.5192 10.8442 38 1 5.7211 0.3925 11.4249 39 1 5.1870 1.1933 9.3161 40 1 4.8357 0.4362 7.0060 41 1 4.5188 -2.5453 2.9175 42 1 3.3818 -1.5028 3.8775 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:12 Heat of formation + Delta-G solvation = -124.710607 kcal Electronic energy + Delta-G solvation = -27183.413025 eV Core-core repulsion = 23030.692266 eV Total energy + Delta-G solvation = -4152.720759 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84900 -40.69195 -39.31559 -38.38579 -37.98385 -37.23334 -37.01182 -35.04738 -32.97407 -31.26670 -30.98997 -30.10591 -27.60568 -26.79673 -24.58902 -23.99718 -22.96937 -21.67818 -20.93060 -19.81853 -19.33632 -18.76245 -18.44134 -18.02033 -17.61852 -17.15826 -17.01689 -16.69640 -16.57418 -16.40677 -16.10458 -15.96007 -15.57081 -15.27285 -14.76283 -14.62122 -14.18161 -14.07501 -14.03372 -13.92128 -13.63689 -13.50701 -13.47358 -13.22617 -13.07896 -13.01950 -13.01006 -12.65625 -12.49852 -12.15116 -12.06928 -11.96017 -11.83476 -11.53139 -11.13919 -10.93500 -10.45377 -10.24110 -10.08619 -9.90495 -4.89629 -0.91846 -0.54566 -0.01087 1.28351 1.56214 1.70552 1.90370 1.96180 1.97366 2.41776 2.75694 3.02103 3.10077 3.25067 3.32378 3.40206 3.46915 3.58752 3.62411 3.70792 3.75038 3.99929 4.03585 4.08492 4.12713 4.15216 4.24234 4.31181 4.49680 4.54652 4.62396 4.67607 4.70232 4.77863 4.82728 4.91460 4.97091 4.99493 5.00341 5.10054 5.14305 5.43221 5.47193 6.38646 6.60551 6.87050 7.07500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.406 3.594 3 O -0.989 6.989 4 O -0.995 6.995 5 C -0.579 4.579 6 C -0.110 4.110 7 H 0.096 0.904 8 C -0.157 4.157 9 C 0.111 3.889 10 H 0.093 0.907 11 N -0.701 5.701 12 C 0.556 3.444 13 O -0.562 6.562 14 C -0.181 4.181 15 C 0.156 3.844 16 O -0.494 6.494 17 C -0.136 4.136 18 C -0.041 4.041 19 C -0.092 4.092 20 O -0.563 6.563 21 Si 0.780 3.220 22 C -0.153 4.153 23 C -0.052 4.052 24 C -0.111 4.111 25 H 0.154 0.846 26 H 0.127 0.873 27 H 0.154 0.846 28 H 0.172 0.828 29 H 0.168 0.832 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.416 0.584 33 H 0.409 0.591 34 H 0.145 0.855 35 H 0.095 0.905 36 H 0.406 0.594 37 H -0.285 1.285 38 H -0.282 1.282 39 H 0.139 0.861 40 H 0.169 0.831 41 H 0.088 0.912 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 -1.516 10.605 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.596 3.404 3 O -0.986 6.986 4 O -0.992 6.992 5 C -0.711 4.711 6 C -0.130 4.130 7 H 0.115 0.885 8 C -0.196 4.196 9 C 0.006 3.994 10 H 0.111 0.889 11 N -0.353 5.353 12 C 0.344 3.656 13 O -0.442 6.442 14 C -0.185 4.185 15 C 0.110 3.890 16 O -0.308 6.308 17 C -0.155 4.155 18 C -0.041 4.041 19 C -0.201 4.201 20 O -0.374 6.374 21 Si 0.684 3.316 22 C -0.170 4.170 23 C -0.070 4.070 24 C -0.150 4.150 25 H 0.172 0.828 26 H 0.145 0.855 27 H 0.172 0.828 28 H 0.190 0.810 29 H 0.186 0.814 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.254 0.746 33 H 0.269 0.731 34 H 0.162 0.838 35 H 0.113 0.887 36 H 0.257 0.743 37 H -0.213 1.213 38 H -0.209 1.209 39 H 0.156 0.844 40 H 0.186 0.814 41 H 0.107 0.893 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.916 -2.126 8.874 12.080 hybrid contribution -0.106 0.279 -0.360 0.467 sum -8.022 -1.847 8.515 11.843 Atomic orbital electron populations 1.30128 1.22430 1.13839 1.13046 1.07817 0.79769 0.74440 0.78407 1.93556 1.80786 1.36768 1.87469 1.93552 1.81013 1.67728 1.56952 1.30135 1.03120 1.16438 1.21364 1.22106 0.92483 0.98396 0.99995 0.88537 1.23783 0.99463 0.96816 0.99533 1.22550 0.98626 0.96480 0.81725 0.88915 1.45751 1.14898 1.61948 1.12732 1.18301 0.82655 0.77477 0.87183 1.90810 1.43175 1.56478 1.53718 1.20457 0.95639 1.07881 0.94535 1.18782 0.86115 0.94599 0.89497 1.84702 1.47310 1.44353 1.54401 1.21407 1.00913 1.01108 0.92039 1.19857 0.93167 0.95585 0.95504 1.25052 1.12727 0.85969 0.96363 1.86438 1.95854 1.18334 1.36740 0.93970 0.73463 0.77847 0.86333 1.21074 0.96913 1.01967 0.97095 1.21408 0.98374 0.95717 0.91506 1.23348 0.96910 0.98033 0.96730 0.82772 0.85484 0.82798 0.81044 0.81421 0.87200 0.92434 0.74559 0.73132 0.83765 0.88691 0.74250 1.21269 1.20927 0.84381 0.81392 0.89315 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.05 10.62 113.37 1.20 8.25 16 2 S 2.41 -6.77 5.35 -56.49 -0.30 -7.08 16 3 O -0.99 -6.80 18.10 -127.37 -2.30 -9.11 16 4 O -1.00 -7.28 18.10 -127.37 -2.31 -9.59 16 5 C -0.58 6.37 5.65 71.98 0.41 6.77 16 6 C -0.11 0.47 3.65 -10.21 -0.04 0.44 16 7 H 0.10 -0.14 8.13 -2.39 -0.02 -0.16 16 8 C -0.16 0.06 7.45 31.18 0.23 0.29 16 9 C 0.11 0.01 4.21 45.52 0.19 0.21 16 10 H 0.09 0.55 7.50 -2.39 -0.02 0.54 16 11 N -0.70 0.31 5.31 -443.20 -2.35 -2.05 16 12 C 0.56 4.37 7.76 86.69 0.67 5.05 16 13 O -0.56 -9.35 14.78 16.94 0.25 -9.10 16 14 C -0.18 -0.99 5.89 -20.01 -0.12 -1.11 16 15 C 0.16 1.23 6.72 22.84 0.15 1.38 16 16 O -0.49 -4.92 11.58 -68.83 -0.80 -5.72 16 17 C -0.14 -0.68 9.60 22.34 0.21 -0.47 16 18 C -0.04 -0.10 5.39 -19.83 -0.11 -0.21 16 19 C -0.09 0.28 2.78 71.23 0.20 0.48 16 20 O -0.56 1.39 12.81 -148.98 -1.91 -0.52 16 21 Si 0.78 -4.65 29.83 68.60 2.05 -2.60 16 22 C -0.15 -0.12 8.64 22.24 0.19 0.07 16 23 C -0.05 0.03 9.54 22.52 0.21 0.25 16 24 C -0.11 0.81 7.39 31.12 0.23 1.04 16 25 H 0.15 -2.43 8.14 -2.39 -0.02 -2.45 16 26 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 27 H 0.15 -2.41 8.14 -2.39 -0.02 -2.43 16 28 H 0.17 -2.97 8.14 -2.39 -0.02 -2.99 16 29 H 0.17 -2.91 7.86 -2.38 -0.02 -2.93 16 30 H 0.11 -0.46 7.91 -2.39 -0.02 -0.48 16 31 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.42 -3.35 6.74 -92.71 -0.63 -3.97 16 33 H 0.41 1.30 9.06 -74.06 -0.67 0.63 16 34 H 0.14 0.50 8.06 -2.91 -0.02 0.47 16 35 H 0.10 -0.60 7.96 -2.39 -0.02 -0.62 16 36 H 0.41 -5.25 8.74 -74.05 -0.65 -5.89 16 37 H -0.29 -0.03 7.04 99.48 0.70 0.67 16 38 H -0.28 0.31 7.11 99.48 0.71 1.02 16 39 H 0.14 -0.27 4.83 -2.91 -0.01 -0.28 16 40 H 0.17 -1.52 6.40 -2.91 -0.02 -1.54 16 41 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.12 -1.64 8.07 -2.39 -0.02 -1.66 16 Total: 0.00 -42.11 365.40 -4.85 -46.95 By element: Atomic # 1 Polarization: -22.82 SS G_CDS: -0.82 Total: -23.64 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 3.65 Total: 22.44 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -2.35 Total: -2.05 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -7.06 Total: -34.03 kcal Atomic # 14 Polarization: -4.65 SS G_CDS: 2.05 Total: -2.60 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -0.30 Total: -7.08 kcal Total: -42.11 -4.85 -46.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.758 kcal (2) G-P(sol) polarization free energy of solvation -42.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds