Wall clock time and date at job start Tue Mar 9 2021 12:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37786 * 119.85216 * 2 1 4 4 C 1.39698 * 119.91026 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.19376 * 180.02562 * 4 3 2 6 6 O 1.21586 * 120.00428 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99986 * 359.97438 * 5 4 3 8 8 C 1.46495 * 120.00225 * 180.02562 * 7 5 4 9 9 H 1.09003 * 112.84995 * 336.19396 * 8 7 5 10 10 C 1.53783 * 113.61563 * 107.50231 * 8 7 5 11 11 C 1.53787 * 87.08126 * 139.98214 * 10 8 7 12 12 H 1.09000 * 113.69414 * 89.12431 * 11 10 8 13 13 C 1.52993 * 113.61629 * 220.02321 * 11 10 8 14 14 S 1.81405 * 109.46846 * 272.49655 * 13 11 10 15 15 C 1.81405 * 101.92278 * 179.97438 * 14 13 11 16 16 O 1.42100 * 108.57921 * 294.48624 * 14 13 11 17 17 O 1.42098 * 108.57929 * 65.51081 * 14 13 11 18 18 C 1.53782 * 113.61561 * 205.00315 * 8 7 5 19 19 C 1.40143 * 119.61845 * 359.73180 * 4 3 2 20 20 O 1.35651 * 120.15486 * 180.29322 * 19 4 3 21 21 C 1.38713 * 119.69531 * 0.51446 * 19 4 3 22 22 C 1.50696 * 119.95509 * 179.75673 * 21 19 4 23 23 O 1.42903 * 109.47131 * 284.72403 * 22 21 19 24 24 Si 1.86305 * 109.47185 * 164.72944 * 22 21 19 25 25 C 1.38053 * 120.08470 * 359.48297 * 21 19 4 26 26 H 1.08993 * 109.47176 * 270.02036 * 1 2 3 27 27 H 1.09004 * 109.46909 * 30.01905 * 1 2 3 28 28 H 1.09004 * 109.47325 * 150.02124 * 1 2 3 29 29 H 1.08000 * 120.04234 * 0.02562 * 3 2 1 30 30 H 0.96998 * 119.99590 * 0.02562 * 7 5 4 31 31 H 1.09003 * 113.61682 * 254.52771 * 10 8 7 32 32 H 1.09000 * 113.61310 * 25.43485 * 10 8 7 33 33 H 1.09000 * 109.47230 * 32.49167 * 13 11 10 34 34 H 1.09000 * 109.47572 * 152.49710 * 13 11 10 35 35 H 1.08997 * 109.47167 * 59.99893 * 15 14 13 36 36 H 1.08998 * 109.46880 * 179.97438 * 15 14 13 37 37 H 1.09000 * 109.46788 * 299.99668 * 15 14 13 38 38 H 1.09000 * 113.61368 * 334.56155 * 18 8 7 39 39 H 1.08995 * 113.61656 * 105.46944 * 18 8 7 40 40 H 0.96697 * 114.00143 * 270.22541 * 20 19 4 41 41 H 1.08999 * 109.47358 * 44.72763 * 22 21 19 42 42 H 0.96700 * 114.00311 * 300.00591 * 23 22 21 43 43 H 1.48499 * 109.99670 * 58.67633 * 24 22 21 44 44 H 1.48497 * 110.00233 * 179.97438 * 24 22 21 45 45 H 1.08000 * 119.80346 * 180.24526 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1950 0.0000 4 6 3.5898 1.1965 0.0005 5 6 4.3305 2.4724 0.0011 6 8 5.5464 2.4696 0.0011 7 7 3.6594 3.6412 0.0006 8 6 4.3948 4.9082 0.0006 9 1 5.4020 4.8130 0.4065 10 6 4.3381 5.6534 -1.3434 11 6 4.1897 6.9494 -0.5289 12 1 5.1406 7.4143 -0.2683 13 6 3.1892 7.9392 -1.1289 14 16 4.0356 8.9994 -2.3332 15 6 2.6864 10.0691 -2.9043 16 8 4.9866 9.7986 -1.6432 17 8 4.4658 8.1939 -3.4219 18 6 3.5995 6.0822 0.5956 19 6 4.2837 -0.0211 0.0068 20 8 5.6401 -0.0324 0.0134 21 6 3.5770 -1.2148 0.0015 22 6 4.3172 -2.5274 0.0027 23 8 4.8554 -2.7719 -1.2984 24 14 3.1442 -3.9014 0.4576 25 6 2.1966 -1.2017 0.0010 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8899 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6511 2.1293 0.0004 30 1 2.6894 3.6434 0.0002 31 1 5.2663 5.5992 -1.9123 32 1 3.4595 5.4101 -1.9408 33 1 2.3894 7.3907 -1.6266 34 1 2.7675 8.5558 -0.3351 35 1 2.2791 10.6231 -2.0585 36 1 3.0677 10.7695 -3.6473 37 1 1.9017 9.4576 -3.3498 38 1 2.5189 5.9561 0.5282 39 1 3.9313 6.3740 1.5919 40 1 6.0378 -0.0343 -0.8681 41 1 5.1284 -2.4866 0.7296 42 1 4.1886 -2.8209 -1.9970 43 1 2.0168 -3.9471 -0.5078 44 1 3.8619 -5.2015 0.4617 45 1 1.6510 -2.1338 0.0009 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_13422088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:16 Heat of formation + Delta-G solvation = -120.348784 kcal Electronic energy + Delta-G solvation = -29484.483359 eV Core-core repulsion = 25176.414124 eV Total energy + Delta-G solvation = -4308.069235 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.81727 -40.80766 -39.25277 -38.02195 -37.99220 -37.68765 -37.02561 -34.92825 -33.16519 -32.87878 -31.17584 -30.35616 -27.71527 -26.91418 -26.82183 -25.72060 -23.54024 -22.09188 -21.52663 -20.83208 -19.93349 -19.56713 -18.40264 -18.17275 -17.81724 -17.53536 -17.21220 -17.10693 -16.88177 -16.51293 -16.27604 -16.01949 -15.84486 -15.66051 -15.11461 -15.01253 -14.74353 -14.63928 -14.39082 -14.31928 -14.29318 -13.79399 -13.68783 -13.65029 -13.42442 -13.29206 -13.13715 -13.08142 -12.99369 -12.78800 -12.60927 -12.23884 -12.22673 -12.08885 -11.78841 -11.69147 -11.60799 -11.29039 -10.88853 -10.50963 -10.22734 -10.03211 -9.55865 -5.02985 -1.11430 -0.36537 0.01620 1.20119 1.48093 1.65864 1.74026 1.88784 2.05640 2.54011 2.55960 2.87294 3.17805 3.19410 3.23670 3.31578 3.41876 3.43805 3.52969 3.58557 3.62692 3.70295 3.74862 3.89150 4.01091 4.03633 4.05323 4.22289 4.25359 4.47709 4.49499 4.50486 4.53259 4.55323 4.58072 4.59813 4.70768 4.79681 4.87460 4.91583 4.94160 5.07149 5.16124 5.26493 5.45231 5.54358 6.33789 6.43319 6.77061 7.21845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 C -0.067 4.067 4 C -0.165 4.165 5 C 0.560 3.440 6 O -0.515 6.515 7 N -0.719 5.719 8 C 0.124 3.876 9 H 0.122 0.878 10 C -0.153 4.153 11 C -0.103 4.103 12 H 0.111 0.889 13 C -0.600 4.600 14 S 2.418 3.582 15 C -0.659 4.659 16 O -0.938 6.938 17 O -0.933 6.933 18 C -0.131 4.131 19 C 0.192 3.808 20 O -0.472 6.472 21 C -0.149 4.149 22 C -0.071 4.071 23 O -0.526 6.526 24 Si 0.693 3.307 25 C -0.081 4.081 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.399 0.601 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.399 0.601 41 H 0.124 0.876 42 H 0.374 0.626 43 H -0.259 1.259 44 H -0.254 1.254 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.729 1.043 1.467 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.098 4.098 3 C -0.086 4.086 4 C -0.169 4.169 5 C 0.347 3.653 6 O -0.390 6.390 7 N -0.371 5.371 8 C 0.019 3.981 9 H 0.140 0.860 10 C -0.191 4.191 11 C -0.122 4.122 12 H 0.129 0.871 13 C -0.729 4.729 14 S 2.600 3.400 15 C -0.808 4.808 16 O -0.935 6.935 17 O -0.931 6.931 18 C -0.170 4.170 19 C 0.145 3.855 20 O -0.283 6.283 21 C -0.150 4.150 22 C -0.181 4.181 23 O -0.332 6.332 24 Si 0.594 3.406 25 C -0.099 4.099 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.148 0.852 30 H 0.234 0.766 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.259 0.741 41 H 0.142 0.858 42 H 0.221 0.779 43 H -0.184 1.184 44 H -0.179 1.179 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.808 0.303 1.880 9.012 hybrid contribution -1.364 0.495 -1.448 2.050 sum -10.172 0.799 0.431 10.212 Atomic orbital electron populations 1.20832 0.90056 1.03358 1.03067 1.19783 0.96726 0.92280 1.00993 1.21107 0.92125 0.98240 0.97116 1.20393 0.93932 0.93498 1.09029 1.18074 0.87368 0.83387 0.76437 1.90844 1.12994 1.87223 1.47938 1.45865 1.09974 1.05273 1.75999 1.22501 0.97897 0.81006 0.96729 0.86040 1.23703 1.04358 0.93813 0.97250 1.22075 0.98274 0.93606 0.98287 0.87056 1.30297 1.11699 1.13775 1.17083 1.07962 0.77909 0.77212 0.76946 1.30302 1.20358 1.16917 1.13213 1.93625 1.56503 1.68767 1.74573 1.93623 1.79131 1.68335 1.51972 1.23379 1.00611 0.94286 0.98733 1.18234 0.84025 0.89665 0.93546 1.84682 1.14029 1.95854 1.33749 1.20627 0.93931 0.95736 1.04745 1.24982 1.05746 0.98884 0.88440 1.86646 1.36768 1.93483 1.16342 0.94841 0.77997 0.77516 0.90264 1.21179 0.92926 0.98555 0.97272 0.90427 0.91146 0.91112 0.85211 0.76564 0.89590 0.88899 0.84820 0.84495 0.85317 0.85094 0.85342 0.89007 0.89767 0.74146 0.85850 0.77893 1.18390 1.17910 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.46 10.00 36.01 0.36 0.82 16 2 C -0.10 0.18 5.87 -104.67 -0.61 -0.44 16 3 C -0.07 0.10 9.18 -39.20 -0.36 -0.26 16 4 C -0.16 -0.21 5.89 -104.85 -0.62 -0.82 16 5 C 0.56 1.44 7.76 -12.47 -0.10 1.34 16 6 O -0.51 -3.29 14.76 -16.59 -0.24 -3.54 16 7 N -0.72 0.58 5.30 -54.06 -0.29 0.29 16 8 C 0.12 -0.09 4.24 -67.12 -0.28 -0.37 16 9 H 0.12 0.14 7.46 -51.93 -0.39 -0.25 16 10 C -0.15 0.15 7.43 -25.91 -0.19 -0.04 16 11 C -0.10 0.24 3.66 -89.80 -0.33 -0.09 16 12 H 0.11 -0.21 8.13 -51.93 -0.42 -0.63 16 13 C -0.60 2.79 5.64 37.15 0.21 3.00 16 14 S 2.42 -4.35 5.35 -107.50 -0.58 -4.93 16 15 C -0.66 3.09 10.62 101.05 1.07 4.16 16 16 O -0.94 -2.38 18.10 -57.83 -1.05 -3.43 16 17 O -0.93 -2.15 18.10 -57.83 -1.05 -3.20 16 18 C -0.13 0.42 7.39 -25.91 -0.19 0.23 16 19 C 0.19 0.41 6.69 -38.69 -0.26 0.15 16 20 O -0.47 -1.68 10.90 -40.53 -0.44 -2.12 16 21 C -0.15 -0.05 5.27 -104.52 -0.55 -0.60 16 22 C -0.07 -0.01 2.38 36.00 0.09 0.08 16 23 O -0.53 -0.52 12.88 -35.23 -0.45 -0.97 16 24 Si 0.69 -0.90 30.24 -169.99 -5.14 -6.04 16 25 C -0.08 0.10 8.30 -39.53 -0.33 -0.23 16 26 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 27 H 0.07 -0.33 8.08 -51.93 -0.42 -0.75 16 28 H 0.07 -0.29 8.08 -51.93 -0.42 -0.71 16 29 H 0.13 -0.57 6.40 -52.49 -0.34 -0.91 16 30 H 0.40 -1.50 6.76 -40.82 -0.28 -1.78 16 31 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.09 -0.20 7.90 -51.93 -0.41 -0.61 16 33 H 0.13 -0.92 7.84 -51.92 -0.41 -1.33 16 34 H 0.14 -0.94 8.14 -51.92 -0.42 -1.37 16 35 H 0.13 -0.82 8.14 -51.93 -0.42 -1.24 16 36 H 0.13 -0.56 8.14 -51.93 -0.42 -0.99 16 37 H 0.13 -0.83 8.14 -51.92 -0.42 -1.25 16 38 H 0.09 -0.45 8.08 -51.93 -0.42 -0.87 16 39 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 40 H 0.40 0.47 9.06 45.56 0.41 0.88 16 41 H 0.12 0.10 7.82 -51.93 -0.41 -0.31 16 42 H 0.37 -0.81 8.70 45.56 0.40 -0.41 16 43 H -0.26 0.08 6.68 56.52 0.38 0.46 16 44 H -0.25 -0.55 7.11 56.52 0.40 -0.14 16 45 H 0.14 -0.36 4.83 -52.49 -0.25 -0.62 16 LS Contribution 385.89 15.07 5.82 5.82 Total: 0.00 -14.81 385.89 -11.04 -25.85 By element: Atomic # 1 Polarization: -9.14 SS G_CDS: -5.53 Total: -14.67 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.09 Total: 6.93 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -0.29 Total: 0.29 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -3.23 Total: -13.26 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: -5.14 Total: -6.04 kcal Atomic # 16 Polarization: -4.35 SS G_CDS: -0.58 Total: -4.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -14.81 -11.04 -25.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13422088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.499 kcal (2) G-P(sol) polarization free energy of solvation -14.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds