Wall clock time and date at job start Tue Mar 9 2021 12:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37786 * 119.85216 * 2 1 4 4 C 1.39698 * 119.91026 * 179.97438 * 3 2 1 5 5 C 1.47535 * 120.19376 * 180.02562 * 4 3 2 6 6 O 1.21586 * 120.00428 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99986 * 359.97438 * 5 4 3 8 8 C 1.46495 * 120.00225 * 180.02562 * 7 5 4 9 9 H 1.09003 * 112.84995 * 336.19396 * 8 7 5 10 10 C 1.53783 * 113.61563 * 107.50231 * 8 7 5 11 11 C 1.53787 * 87.08126 * 139.98214 * 10 8 7 12 12 H 1.09000 * 113.69414 * 89.12431 * 11 10 8 13 13 C 1.52993 * 113.61629 * 220.02321 * 11 10 8 14 14 S 1.81405 * 109.46846 * 272.49655 * 13 11 10 15 15 C 1.81405 * 101.92278 * 179.97438 * 14 13 11 16 16 O 1.42100 * 108.57921 * 294.48624 * 14 13 11 17 17 O 1.42098 * 108.57929 * 65.51081 * 14 13 11 18 18 C 1.53782 * 113.61561 * 205.00315 * 8 7 5 19 19 C 1.40143 * 119.61845 * 359.73180 * 4 3 2 20 20 O 1.35651 * 120.15486 * 180.29322 * 19 4 3 21 21 C 1.38713 * 119.69531 * 0.51446 * 19 4 3 22 22 C 1.50696 * 119.95509 * 179.75673 * 21 19 4 23 23 O 1.42903 * 109.47131 * 284.72403 * 22 21 19 24 24 Si 1.86305 * 109.47185 * 164.72944 * 22 21 19 25 25 C 1.38053 * 120.08470 * 359.48297 * 21 19 4 26 26 H 1.08993 * 109.47176 * 270.02036 * 1 2 3 27 27 H 1.09004 * 109.46909 * 30.01905 * 1 2 3 28 28 H 1.09004 * 109.47325 * 150.02124 * 1 2 3 29 29 H 1.08000 * 120.04234 * 0.02562 * 3 2 1 30 30 H 0.96998 * 119.99590 * 0.02562 * 7 5 4 31 31 H 1.09003 * 113.61682 * 254.52771 * 10 8 7 32 32 H 1.09000 * 113.61310 * 25.43485 * 10 8 7 33 33 H 1.09000 * 109.47230 * 32.49167 * 13 11 10 34 34 H 1.09000 * 109.47572 * 152.49710 * 13 11 10 35 35 H 1.08997 * 109.47167 * 59.99893 * 15 14 13 36 36 H 1.08998 * 109.46880 * 179.97438 * 15 14 13 37 37 H 1.09000 * 109.46788 * 299.99668 * 15 14 13 38 38 H 1.09000 * 113.61368 * 334.56155 * 18 8 7 39 39 H 1.08995 * 113.61656 * 105.46944 * 18 8 7 40 40 H 0.96697 * 114.00143 * 270.22541 * 20 19 4 41 41 H 1.08999 * 109.47358 * 44.72763 * 22 21 19 42 42 H 0.96700 * 114.00311 * 300.00591 * 23 22 21 43 43 H 1.48499 * 109.99670 * 58.67633 * 24 22 21 44 44 H 1.48497 * 110.00233 * 179.97438 * 24 22 21 45 45 H 1.08000 * 119.80346 * 180.24526 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1929 1.1950 0.0000 4 6 3.5898 1.1965 0.0005 5 6 4.3305 2.4724 0.0011 6 8 5.5464 2.4696 0.0011 7 7 3.6594 3.6412 0.0006 8 6 4.3948 4.9082 0.0006 9 1 5.4020 4.8130 0.4065 10 6 4.3381 5.6534 -1.3434 11 6 4.1897 6.9494 -0.5289 12 1 5.1406 7.4143 -0.2683 13 6 3.1892 7.9392 -1.1289 14 16 4.0356 8.9994 -2.3332 15 6 2.6864 10.0691 -2.9043 16 8 4.9866 9.7986 -1.6432 17 8 4.4658 8.1939 -3.4219 18 6 3.5995 6.0822 0.5956 19 6 4.2837 -0.0211 0.0068 20 8 5.6401 -0.0324 0.0134 21 6 3.5770 -1.2148 0.0015 22 6 4.3172 -2.5274 0.0027 23 8 4.8554 -2.7719 -1.2984 24 14 3.1442 -3.9014 0.4576 25 6 2.1966 -1.2017 0.0010 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8899 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6511 2.1293 0.0004 30 1 2.6894 3.6434 0.0002 31 1 5.2663 5.5992 -1.9123 32 1 3.4595 5.4101 -1.9408 33 1 2.3894 7.3907 -1.6266 34 1 2.7675 8.5558 -0.3351 35 1 2.2791 10.6231 -2.0585 36 1 3.0677 10.7695 -3.6473 37 1 1.9017 9.4576 -3.3498 38 1 2.5189 5.9561 0.5282 39 1 3.9313 6.3740 1.5919 40 1 6.0378 -0.0343 -0.8681 41 1 5.1284 -2.4866 0.7296 42 1 4.1886 -2.8209 -1.9970 43 1 2.0168 -3.9471 -0.5078 44 1 3.8619 -5.2015 0.4617 45 1 1.6510 -2.1338 0.0009 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13422088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:15 Heat of formation + Delta-G solvation = -130.236627 kcal Electronic energy + Delta-G solvation = -29484.912128 eV Core-core repulsion = 25176.414124 eV Total energy + Delta-G solvation = -4308.498004 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84201 -40.74752 -39.31053 -38.04840 -37.97138 -37.76493 -36.99819 -35.00595 -33.08398 -32.80073 -30.92361 -30.06023 -27.53564 -26.78709 -26.75559 -25.70825 -23.46031 -22.02619 -21.58713 -20.71142 -19.80867 -19.62550 -18.42672 -18.12948 -17.74107 -17.47832 -17.11735 -16.98126 -16.91425 -16.45961 -16.20257 -16.03668 -15.91019 -15.68194 -15.11803 -14.96462 -14.60363 -14.37371 -14.24440 -14.04131 -13.90300 -13.64709 -13.55867 -13.46339 -13.33380 -13.20954 -13.06212 -13.00296 -12.92821 -12.66564 -12.51032 -12.23314 -12.05358 -11.94291 -11.81358 -11.71120 -11.50074 -11.11694 -10.97536 -10.54834 -10.26239 -10.00118 -9.50211 -4.94818 -0.90294 -0.35228 0.06645 1.24553 1.52609 1.69471 1.91514 1.92314 2.06348 2.53499 2.77489 3.11762 3.18616 3.34964 3.36857 3.43588 3.50473 3.55400 3.65800 3.74768 3.78117 4.04547 4.10141 4.12577 4.17392 4.19204 4.32251 4.40532 4.53580 4.55762 4.61569 4.71039 4.74259 4.80467 4.83903 4.92302 4.94725 4.97888 4.98986 5.02995 5.15883 5.21198 5.25810 5.42648 5.51507 5.68403 6.45618 6.46910 6.67391 7.16061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.059 4.059 4 C -0.180 4.180 5 C 0.553 3.447 6 O -0.568 6.568 7 N -0.699 5.699 8 C 0.111 3.889 9 H 0.090 0.910 10 C -0.157 4.157 11 C -0.111 4.111 12 H 0.094 0.906 13 C -0.578 4.578 14 S 2.403 3.597 15 C -0.642 4.642 16 O -0.996 6.996 17 O -0.990 6.990 18 C -0.110 4.110 19 C 0.160 3.840 20 O -0.494 6.494 21 C -0.153 4.153 22 C -0.086 4.086 23 O -0.547 6.547 24 Si 0.780 3.220 25 C -0.080 4.080 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.164 0.836 30 H 0.417 0.583 31 H 0.054 0.946 32 H 0.112 0.888 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.154 0.846 36 H 0.126 0.874 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.400 0.600 41 H 0.107 0.893 42 H 0.386 0.614 43 H -0.259 1.259 44 H -0.305 1.305 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.801 1.716 2.032 16.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.077 4.077 4 C -0.184 4.184 5 C 0.341 3.659 6 O -0.448 6.448 7 N -0.352 5.352 8 C 0.006 3.994 9 H 0.108 0.892 10 C -0.196 4.196 11 C -0.131 4.131 12 H 0.113 0.887 13 C -0.709 4.709 14 S 2.592 3.408 15 C -0.794 4.794 16 O -0.993 6.993 17 O -0.987 6.987 18 C -0.149 4.149 19 C 0.113 3.887 20 O -0.306 6.306 21 C -0.154 4.154 22 C -0.194 4.194 23 O -0.355 6.355 24 Si 0.684 3.316 25 C -0.098 4.098 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.181 0.819 30 H 0.256 0.744 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.188 0.812 34 H 0.190 0.810 35 H 0.172 0.828 36 H 0.144 0.856 37 H 0.173 0.827 38 H 0.144 0.856 39 H 0.106 0.894 40 H 0.259 0.741 41 H 0.125 0.875 42 H 0.235 0.765 43 H -0.185 1.185 44 H -0.233 1.233 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.888 1.032 2.425 14.136 hybrid contribution 0.180 0.276 -1.639 1.672 sum -13.708 1.308 0.785 13.792 Atomic orbital electron populations 1.20922 0.87847 1.04445 1.04087 1.20133 0.98171 0.91678 0.99294 1.21438 0.90735 1.00017 0.95534 1.20426 0.95216 0.92381 1.10342 1.18440 0.86954 0.84677 0.75790 1.90814 1.15290 1.87980 1.50670 1.45717 1.10773 1.04284 1.74426 1.22514 0.97432 0.81873 0.97597 0.89199 1.23759 1.03736 0.95038 0.97041 1.22082 0.98742 0.93689 0.98582 0.88735 1.30125 1.11129 1.12910 1.16742 1.07902 0.78887 0.77338 0.76635 1.30124 1.18746 1.16338 1.14190 1.93551 1.60188 1.70170 1.75430 1.93555 1.81293 1.69695 1.54144 1.23353 1.01976 0.91402 0.98185 1.18609 0.83499 0.91015 0.95549 1.84655 1.15587 1.96090 1.34240 1.20627 0.94673 0.94906 1.05164 1.25283 1.06007 1.00270 0.87844 1.86606 1.38116 1.93632 1.17191 0.93845 0.76026 0.73005 0.88765 1.21422 0.92101 0.99883 0.96398 0.89293 0.89672 0.90529 0.81888 0.74437 0.92699 0.86984 0.81226 0.80981 0.82750 0.85552 0.82666 0.85620 0.89446 0.74089 0.87538 0.76481 1.18461 1.23338 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.33 10.00 71.24 0.71 2.05 16 2 C -0.09 0.55 5.87 -19.90 -0.12 0.43 16 3 C -0.06 0.28 9.18 22.52 0.21 0.49 16 4 C -0.18 -0.60 5.89 -20.01 -0.12 -0.72 16 5 C 0.55 3.84 7.76 86.70 0.67 4.51 16 6 O -0.57 -9.49 14.76 16.93 0.25 -9.24 16 7 N -0.70 1.15 5.30 -443.20 -2.35 -1.20 16 8 C 0.11 -0.05 4.24 45.52 0.19 0.14 16 9 H 0.09 0.54 7.46 -2.39 -0.02 0.52 16 10 C -0.16 0.16 7.43 31.12 0.23 0.39 16 11 C -0.11 0.54 3.66 -10.27 -0.04 0.50 16 12 H 0.09 -0.15 8.13 -2.39 -0.02 -0.17 16 13 C -0.58 6.76 5.64 71.98 0.41 7.16 16 14 S 2.40 -7.52 5.35 -56.49 -0.30 -7.82 16 15 C -0.64 7.37 10.62 113.37 1.20 8.57 16 16 O -1.00 -7.12 18.10 -127.37 -2.31 -9.43 16 17 O -0.99 -6.56 18.10 -127.37 -2.30 -8.86 16 18 C -0.11 0.89 7.39 31.12 0.23 1.12 16 19 C 0.16 1.03 6.69 22.85 0.15 1.18 16 20 O -0.49 -5.47 10.90 -68.75 -0.75 -6.22 16 21 C -0.15 -0.23 5.27 -19.80 -0.10 -0.33 16 22 C -0.09 -0.15 2.38 71.23 0.17 0.02 16 23 O -0.55 -2.12 12.88 -148.98 -1.92 -4.04 16 24 Si 0.78 -2.06 30.24 68.60 2.07 0.01 16 25 C -0.08 0.29 8.30 22.30 0.19 0.48 16 26 H 0.09 -1.14 8.14 -2.39 -0.02 -1.16 16 27 H 0.08 -1.17 8.08 -2.39 -0.02 -1.19 16 28 H 0.08 -0.90 8.08 -2.39 -0.02 -0.92 16 29 H 0.16 -2.02 6.40 -2.91 -0.02 -2.04 16 30 H 0.42 -4.08 6.76 -92.71 -0.63 -4.70 16 31 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.11 -0.59 7.90 -2.39 -0.02 -0.61 16 33 H 0.17 -3.12 7.84 -2.39 -0.02 -3.14 16 34 H 0.17 -3.12 8.14 -2.39 -0.02 -3.14 16 35 H 0.15 -2.51 8.14 -2.39 -0.02 -2.53 16 36 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 37 H 0.16 -2.56 8.14 -2.39 -0.02 -2.58 16 38 H 0.13 -1.83 8.08 -2.39 -0.02 -1.85 16 39 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.40 2.87 9.06 -74.06 -0.67 2.20 16 41 H 0.11 0.48 7.82 -2.39 -0.02 0.46 16 42 H 0.39 -1.22 8.70 -74.06 -0.64 -1.86 16 43 H -0.26 0.65 6.68 99.48 0.66 1.32 16 44 H -0.31 -1.78 7.11 99.48 0.71 -1.07 16 45 H 0.15 -1.17 4.83 -2.91 -0.01 -1.18 16 Total: 0.00 -41.63 385.89 -4.51 -46.14 By element: Atomic # 1 Polarization: -24.45 SS G_CDS: -0.89 Total: -25.34 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 3.99 Total: 25.99 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -2.35 Total: -1.20 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -7.03 Total: -37.78 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: 2.07 Total: 0.01 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -0.30 Total: -7.82 kcal Total: -41.63 -4.51 -46.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13422088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.094 kcal (2) G-P(sol) polarization free energy of solvation -41.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds