Wall clock time and date at job start Tue Mar 9 2021 12:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37871 * 126.45813 * 2 1 4 4 C 1.46683 * 126.23314 * 359.97438 * 3 2 1 5 5 O 1.21696 * 119.99692 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99715 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99525 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.91148 * 23.75262 * 7 6 4 9 9 C 1.53786 * 113.61370 * 155.00031 * 7 6 4 10 10 C 1.53781 * 87.17350 * 140.02367 * 9 7 6 11 11 H 1.08999 * 113.61567 * 89.07405 * 10 9 7 12 12 C 1.52991 * 113.61529 * 219.97788 * 10 9 7 13 13 S 1.81402 * 109.47238 * 184.99823 * 12 10 9 14 14 C 1.81407 * 101.92159 * 179.97438 * 13 12 10 15 15 O 1.42090 * 108.58085 * 294.48796 * 13 12 10 16 16 O 1.42106 * 108.57713 * 65.51675 * 13 12 10 17 17 C 1.53781 * 87.08070 * 334.52830 * 10 9 7 18 18 N 1.37649 * 107.53195 * 180.25846 * 3 2 1 19 19 C 1.35529 * 108.64892 * 359.62103 * 18 3 2 20 20 C 1.50695 * 125.57090 * 180.18265 * 19 18 3 21 21 O 1.42897 * 109.46837 * 65.25299 * 20 19 18 22 22 Si 1.86299 * 109.47526 * 185.25289 * 20 19 18 23 23 C 1.35455 * 108.86984 * 0.38281 * 19 18 3 24 24 H 1.09007 * 109.46427 * 90.00266 * 1 2 3 25 25 H 1.08992 * 109.47274 * 210.00220 * 1 2 3 26 26 H 1.09000 * 109.46876 * 330.00917 * 1 2 3 27 27 H 0.97000 * 119.99938 * 359.97438 * 6 4 3 28 28 H 1.09002 * 113.61357 * 25.43283 * 9 7 6 29 29 H 1.09002 * 113.61608 * 254.61445 * 9 7 6 30 30 H 1.08997 * 109.47550 * 304.99814 * 12 10 9 31 31 H 1.09002 * 109.47334 * 65.00084 * 12 10 9 32 32 H 1.09008 * 109.46589 * 60.00638 * 14 13 12 33 33 H 1.08996 * 109.47107 * 179.97438 * 14 13 12 34 34 H 1.08995 * 109.47335 * 300.00400 * 14 13 12 35 35 H 1.09005 * 113.61471 * 139.98321 * 17 10 9 36 36 H 1.08996 * 113.61178 * 270.79663 * 17 10 9 37 37 H 0.97001 * 125.67594 * 179.73911 * 18 3 2 38 38 H 1.09000 * 109.47057 * 305.25506 * 20 19 18 39 39 H 0.96700 * 114.00423 * 60.00040 * 21 20 19 40 40 H 1.48498 * 109.99560 * 58.68359 * 22 20 19 41 41 H 1.48503 * 110.00035 * 180.02562 * 22 20 19 42 42 H 1.08000 * 126.07236 * 179.74864 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5093 -0.0005 5 8 0.7027 2.7766 -0.0006 6 7 2.8038 3.4999 -0.0010 7 6 2.3679 4.8985 -0.0021 8 1 1.3642 5.0304 0.4020 9 6 3.4037 5.8670 0.5930 10 6 3.0222 6.8450 -0.5307 11 1 2.1970 7.5081 -0.2710 12 6 4.2183 7.5886 -1.1283 13 16 3.6300 8.8117 -2.3319 14 6 5.1838 9.5568 -2.8989 15 8 3.0331 8.1233 -3.4222 16 8 2.8795 9.8015 -1.6416 17 6 2.5907 5.6154 -1.3473 18 7 3.6284 0.6624 -0.0059 19 6 3.6218 -0.6928 -0.0010 20 6 4.8434 -1.5753 -0.0010 21 8 5.5628 -1.3927 1.2200 22 14 4.3222 -3.3574 -0.1541 23 6 2.3380 -1.1248 -0.0006 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 3.7501 3.2867 -0.0006 28 1 4.4294 5.5042 0.5266 29 1 3.1450 6.2247 1.5896 30 1 4.7653 8.0953 -0.3333 31 1 4.8769 6.8768 -1.6260 32 1 5.8143 8.7873 -3.3445 33 1 4.9686 10.3248 -3.6418 34 1 5.7021 10.0056 -2.0515 35 1 1.6744 5.7693 -1.9172 36 1 3.3938 5.1847 -1.9453 37 1 4.4191 1.2243 -0.0109 38 1 5.4831 -1.3103 -0.8428 39 1 5.0538 -1.6101 2.0129 40 1 3.5456 -3.5537 -1.4045 41 1 5.5179 -4.2380 -0.1546 42 1 2.0136 -2.1549 -0.0011 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:37 Heat of formation + Delta-G solvation = -66.726354 kcal Electronic energy + Delta-G solvation = -25806.801195 eV Core-core repulsion = 21882.539625 eV Total energy + Delta-G solvation = -3924.261570 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.61121 -41.04541 -39.32692 -38.00881 -37.81711 -37.04325 -35.12138 -33.44776 -31.93353 -31.12661 -30.38651 -28.16691 -27.04528 -26.94987 -24.35656 -22.29637 -21.59662 -21.30957 -20.25755 -19.93455 -19.47570 -18.14806 -17.99322 -17.55180 -17.17321 -16.85983 -16.69755 -16.38890 -16.20357 -15.94275 -15.39877 -15.11662 -15.05597 -14.50947 -14.46543 -14.34984 -14.29934 -14.02803 -13.80067 -13.68557 -13.59388 -13.47083 -13.32846 -13.09855 -13.00962 -12.91473 -12.75217 -12.28524 -12.16809 -12.10659 -12.04022 -11.65405 -11.32820 -10.98334 -10.74122 -10.20048 -9.83340 -9.17768 -5.08410 -1.13092 0.34688 1.08930 1.51045 1.61660 1.64150 1.81963 1.98509 2.13157 2.33410 2.54094 2.85274 3.14931 3.20127 3.25196 3.40395 3.48797 3.53191 3.68879 3.71898 3.75979 3.88403 4.01137 4.14093 4.15105 4.21607 4.33492 4.45064 4.52642 4.53782 4.55741 4.73479 4.73658 4.83862 4.91006 5.00610 5.04255 5.21529 5.33393 5.45368 5.64312 5.89567 6.21330 6.33859 6.41111 7.12252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.062 4.062 3 C -0.058 4.058 4 C 0.591 3.409 5 O -0.519 6.519 6 N -0.723 5.723 7 C 0.124 3.876 8 H 0.124 0.876 9 C -0.131 4.131 10 C -0.102 4.102 11 H 0.112 0.888 12 C -0.601 4.601 13 S 2.419 3.581 14 C -0.659 4.659 15 O -0.933 6.933 16 O -0.937 6.937 17 C -0.153 4.153 18 N -0.525 5.525 19 C 0.026 3.974 20 C -0.055 4.055 21 O -0.544 6.544 22 Si 0.721 3.279 23 C -0.200 4.200 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.394 0.606 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.415 0.585 38 H 0.114 0.886 39 H 0.384 0.616 40 H -0.252 1.252 41 H -0.253 1.253 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -1.713 2.825 6.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.071 4.071 3 C -0.170 4.170 4 C 0.380 3.620 5 O -0.394 6.394 6 N -0.374 5.374 7 C 0.020 3.980 8 H 0.142 0.858 9 C -0.170 4.170 10 C -0.122 4.122 11 H 0.130 0.870 12 C -0.729 4.729 13 S 2.601 3.399 14 C -0.808 4.808 15 O -0.930 6.930 16 O -0.934 6.934 17 C -0.191 4.191 18 N -0.121 5.121 19 C -0.092 4.092 20 C -0.165 4.165 21 O -0.349 6.349 22 Si 0.620 3.380 23 C -0.224 4.224 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.228 0.772 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.253 0.747 38 H 0.131 0.869 39 H 0.232 0.768 40 H -0.177 1.177 41 H -0.178 1.178 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.939 -1.717 1.663 5.488 hybrid contribution 2.235 0.753 -0.115 2.361 sum 7.174 -0.965 1.548 7.403 Atomic orbital electron populations 1.20404 0.88790 1.03309 1.02596 1.19957 0.96085 0.90330 1.00720 1.20236 0.83545 0.93527 1.19722 1.17071 0.85930 0.83001 0.76030 1.90847 1.15865 1.83118 1.49595 1.45843 1.09114 1.06067 1.76348 1.22564 1.00162 0.78503 0.96817 0.85811 1.23377 0.99650 0.95207 0.98808 1.22064 0.95978 0.95917 0.98222 0.86975 1.30300 1.08601 1.16878 1.17132 1.07928 0.78025 0.77033 0.76907 1.30303 1.23046 1.14254 1.13187 1.93624 1.73451 1.74090 1.51848 1.93625 1.67068 1.58179 1.74573 1.23747 1.03501 0.94704 0.97191 1.41845 1.07098 1.06580 1.56608 1.21098 0.96869 0.83294 1.07975 1.24949 0.92091 1.09252 0.90231 1.86495 1.42036 1.91152 1.15223 0.93990 0.82761 0.73339 0.87908 1.20611 0.90782 0.99081 1.11967 0.91225 0.91503 0.89983 0.77222 0.89134 0.89725 0.84504 0.84892 0.85377 0.85073 0.85320 0.89462 0.89002 0.74734 0.86861 0.76824 1.17670 1.17809 0.83151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.16 9.83 36.01 0.35 0.20 16 2 C -0.06 -0.12 6.21 -104.16 -0.65 -0.77 16 3 C -0.06 -0.09 7.06 -81.98 -0.58 -0.66 16 4 C 0.59 1.37 7.79 -12.85 -0.10 1.27 16 5 O -0.52 -2.94 14.40 5.19 0.07 -2.87 16 6 N -0.72 0.71 5.36 -54.18 -0.29 0.42 16 7 C 0.12 -0.12 4.25 -66.98 -0.28 -0.41 16 8 H 0.12 0.07 7.46 -51.93 -0.39 -0.32 16 9 C -0.13 0.43 7.39 -25.92 -0.19 0.24 16 10 C -0.10 0.25 3.66 -89.81 -0.33 -0.08 16 11 H 0.11 -0.23 8.13 -51.93 -0.42 -0.65 16 12 C -0.60 2.76 5.64 37.15 0.21 2.97 16 13 S 2.42 -4.43 5.35 -107.50 -0.58 -5.00 16 14 C -0.66 3.04 10.62 101.05 1.07 4.11 16 15 O -0.93 -2.14 18.10 -57.83 -1.05 -3.19 16 16 O -0.94 -2.31 18.10 -57.83 -1.05 -3.36 16 17 C -0.15 0.16 7.44 -25.78 -0.19 -0.04 16 18 N -0.52 0.50 5.99 -5.70 -0.03 0.47 16 19 C 0.03 -0.02 6.46 -81.95 -0.53 -0.55 16 20 C -0.05 0.10 3.08 36.00 0.11 0.21 16 21 O -0.54 0.90 12.88 -35.23 -0.45 0.44 16 22 Si 0.72 -1.69 30.56 -169.99 -5.19 -6.88 16 23 C -0.20 -0.02 9.27 -39.98 -0.37 -0.39 16 24 H 0.07 0.12 8.14 -51.92 -0.42 -0.30 16 25 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 26 H 0.08 0.27 6.48 -51.93 -0.34 -0.07 16 27 H 0.39 -1.48 7.86 -40.82 -0.32 -1.80 16 28 H 0.09 -0.44 8.08 -51.93 -0.42 -0.86 16 29 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 30 H 0.14 -0.93 8.14 -51.93 -0.42 -1.35 16 31 H 0.13 -0.89 7.84 -51.92 -0.41 -1.30 16 32 H 0.13 -0.81 8.14 -51.92 -0.42 -1.23 16 33 H 0.13 -0.56 8.14 -51.93 -0.42 -0.98 16 34 H 0.13 -0.81 8.14 -51.93 -0.42 -1.23 16 35 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.09 -0.18 7.89 -51.93 -0.41 -0.59 16 37 H 0.42 -1.42 8.19 -40.82 -0.33 -1.75 16 38 H 0.11 -0.21 7.96 -51.93 -0.41 -0.62 16 39 H 0.38 -1.94 8.70 45.56 0.40 -1.54 16 40 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 41 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 42 H 0.15 -0.30 6.19 -52.49 -0.32 -0.62 16 LS Contribution 363.56 15.07 5.48 5.48 Total: 0.00 -14.06 363.56 -10.52 -24.58 By element: Atomic # 1 Polarization: -10.25 SS G_CDS: -5.96 Total: -16.21 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.47 Total: 6.11 kcal Atomic # 7 Polarization: 1.21 SS G_CDS: -0.32 Total: 0.89 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -2.47 Total: -8.97 kcal Atomic # 14 Polarization: -1.69 SS G_CDS: -5.19 Total: -6.88 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -0.58 Total: -5.00 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -14.06 -10.52 -24.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.146 kcal (2) G-P(sol) polarization free energy of solvation -14.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds