Wall clock time and date at job start Tue Mar 9 2021 12:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42107 * 108.57804 * 2 1 4 4 O 1.42095 * 108.57891 * 228.97339 * 2 1 3 5 5 C 1.81394 * 101.92128 * 114.48479 * 2 1 3 6 6 C 1.53002 * 109.47361 * 179.97438 * 5 2 1 7 7 H 1.09003 * 112.84327 * 43.80766 * 6 5 2 8 8 C 1.53780 * 113.61629 * 175.00106 * 6 5 2 9 9 C 1.53780 * 87.08118 * 139.98409 * 8 6 5 10 10 H 1.09003 * 113.61599 * 89.19785 * 9 8 6 11 11 N 1.46499 * 113.61714 * 220.02037 * 9 8 6 12 12 C 1.34777 * 120.00199 * 205.00175 * 11 9 8 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 9 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 9 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 11 16 16 C 1.34852 * 125.88652 * 274.68739 * 15 14 12 17 17 C 1.40898 * 107.41326 * 179.88962 * 16 15 14 18 18 C 1.34852 * 107.41530 * 0.37892 * 17 16 15 19 19 C 1.50701 * 125.88764 * 179.73405 * 18 17 16 20 20 O 1.42896 * 109.47264 * 245.03824 * 19 18 17 21 21 Si 1.86298 * 109.47236 * 5.04245 * 19 18 17 22 22 N 1.36338 * 125.88916 * 95.00101 * 15 14 12 23 23 C 1.53783 * 87.08250 * 334.56795 * 9 8 6 24 24 H 1.09005 * 109.47408 * 305.51526 * 1 2 3 25 25 H 1.09001 * 109.47243 * 65.51303 * 1 2 3 26 26 H 1.09002 * 109.47007 * 185.51649 * 1 2 3 27 27 H 1.09004 * 109.47243 * 60.00052 * 5 2 1 28 28 H 1.09006 * 109.47729 * 300.00093 * 5 2 1 29 29 H 1.08998 * 113.61271 * 25.43333 * 8 6 5 30 30 H 1.09002 * 113.69026 * 254.53919 * 8 6 5 31 31 H 0.97000 * 119.99484 * 24.99272 * 11 9 8 32 32 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 33 33 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 34 34 H 1.08000 * 126.29459 * 0.02562 * 16 15 14 35 35 H 1.07997 * 126.28782 * 180.12564 * 17 16 15 36 36 H 1.09010 * 109.46843 * 125.03845 * 19 18 17 37 37 H 0.96703 * 113.99759 * 60.00307 * 20 19 18 38 38 H 1.48505 * 110.00056 * 58.67828 * 21 19 18 39 39 H 1.48501 * 110.00184 * 179.97438 * 21 19 18 40 40 H 0.97001 * 125.64046 * 359.97438 * 22 15 14 41 41 H 1.08995 * 113.61760 * 139.97795 * 23 9 8 42 42 H 1.08998 * 113.61505 * 270.89080 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6152 6 6 3.7055 -0.8195 1.7979 7 1 4.2205 0.0879 1.4826 8 6 4.1317 -1.3181 3.1888 9 6 5.2283 -2.1270 2.4762 10 1 6.1613 -1.5785 2.3468 11 7 5.4285 -3.4655 3.0371 12 6 6.6170 -4.0849 2.8951 13 8 7.5207 -3.5344 2.3025 14 6 6.8208 -5.4644 3.4667 15 6 8.2225 -5.9300 3.1673 16 6 8.6289 -6.5359 2.0332 17 6 10.0067 -6.7987 2.1659 18 6 10.3879 -6.3511 3.3796 19 6 11.7795 -6.4288 3.9528 20 8 11.7775 -7.2900 5.0931 21 14 12.9444 -7.1051 2.6657 22 7 9.2970 -5.8169 3.9988 23 6 4.3237 -2.1092 1.2327 24 1 -0.3634 0.5970 0.8365 25 1 -0.3634 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 1.7610 -1.7369 1.6665 28 1 1.7610 -0.1170 2.4043 29 1 3.3811 -1.9377 3.6795 30 1 4.5202 -0.5316 3.8359 31 1 4.7055 -3.9059 3.5108 32 1 6.6700 -5.4364 4.5459 33 1 6.1054 -6.1531 3.0176 34 1 8.0121 -6.7736 1.1791 35 1 10.6401 -7.2752 1.4324 36 1 12.1059 -5.4323 4.2505 37 1 11.4968 -8.1954 4.9017 38 1 12.9315 -6.2356 1.4619 39 1 14.3203 -7.1861 3.2184 40 1 9.2871 -5.4216 4.8846 41 1 4.8669 -1.9604 0.2996 42 1 3.6255 -2.9450 1.1887 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:41 Heat of formation + Delta-G solvation = -75.008188 kcal Electronic energy + Delta-G solvation = -25303.653222 eV Core-core repulsion = 21379.032524 eV Total energy + Delta-G solvation = -3924.620697 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.33827 -41.11148 -39.47533 -37.97958 -37.69197 -37.00623 -34.87372 -33.09239 -31.93446 -31.06232 -30.16992 -29.21251 -26.75215 -25.47871 -23.89425 -21.83708 -21.36865 -21.18764 -20.63682 -19.80390 -18.93117 -18.10621 -17.89980 -17.45331 -17.04369 -16.95421 -16.46666 -16.36170 -16.28729 -16.05582 -15.27849 -15.14167 -14.68001 -14.56197 -14.35394 -14.07351 -14.03717 -13.90969 -13.84633 -13.66316 -13.57135 -13.44872 -13.16946 -13.04500 -13.00892 -12.82523 -12.54424 -12.12376 -12.03632 -12.00859 -11.94837 -11.49673 -11.11720 -10.92509 -10.64296 -10.05690 -9.80191 -8.96706 -4.97844 -0.90990 1.10670 1.25583 1.59488 1.68615 1.86679 1.91504 1.94362 2.30965 2.51660 2.77503 3.11005 3.36820 3.44091 3.50749 3.63505 3.67194 3.74865 3.79191 3.98628 4.09256 4.10582 4.18902 4.22132 4.34015 4.37229 4.48446 4.53234 4.62490 4.72020 4.75656 4.79631 4.81870 4.95617 4.98456 5.02608 5.21595 5.25360 5.28767 5.55787 5.99626 6.12952 6.54236 6.66889 6.70717 7.27660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.403 3.597 3 O -0.997 6.997 4 O -0.989 6.989 5 C -0.577 4.577 6 C -0.113 4.113 7 H 0.092 0.908 8 C -0.110 4.110 9 C 0.112 3.888 10 H 0.085 0.915 11 N -0.704 5.704 12 C 0.508 3.492 13 O -0.583 6.583 14 C -0.066 4.066 15 C 0.033 3.967 16 C -0.202 4.202 17 C -0.202 4.202 18 C -0.022 4.022 19 C -0.052 4.052 20 O -0.557 6.557 21 Si 0.810 3.190 22 N -0.538 5.538 23 C -0.157 4.157 24 H 0.154 0.846 25 H 0.126 0.874 26 H 0.155 0.845 27 H 0.170 0.830 28 H 0.171 0.829 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.422 0.578 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.100 0.900 37 H 0.397 0.603 38 H -0.297 1.297 39 H -0.291 1.291 40 H 0.418 0.582 41 H 0.052 0.948 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -5.471 6.935 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.592 3.408 3 O -0.994 6.994 4 O -0.986 6.986 5 C -0.709 4.709 6 C -0.133 4.133 7 H 0.110 0.890 8 C -0.149 4.149 9 C 0.006 3.994 10 H 0.103 0.897 11 N -0.357 5.357 12 C 0.295 3.705 13 O -0.462 6.462 14 C -0.106 4.106 15 C -0.081 4.081 16 C -0.227 4.227 17 C -0.226 4.226 18 C -0.136 4.136 19 C -0.161 4.161 20 O -0.365 6.365 21 Si 0.714 3.286 22 N -0.133 5.133 23 C -0.196 4.196 24 H 0.172 0.828 25 H 0.145 0.855 26 H 0.174 0.826 27 H 0.188 0.812 28 H 0.189 0.811 29 H 0.144 0.856 30 H 0.102 0.898 31 H 0.260 0.740 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.117 0.883 37 H 0.248 0.752 38 H -0.225 1.225 39 H -0.219 1.219 40 H 0.256 0.744 41 H 0.071 0.929 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.048 -4.027 5.798 10.705 hybrid contribution -0.767 0.761 0.873 1.389 sum -8.814 -3.265 6.671 11.526 Atomic orbital electron populations 1.30126 1.22316 1.13930 1.13029 1.07904 0.79854 0.74388 0.78632 1.93550 1.81054 1.37195 1.87634 1.93555 1.80804 1.67401 1.56856 1.30124 1.03182 1.16462 1.21125 1.22095 0.92432 0.98685 1.00107 0.89022 1.23333 0.97142 0.99513 0.94929 1.22410 0.98069 0.83983 0.94922 0.89662 1.45807 1.14471 1.17649 1.57731 1.21175 0.82079 0.88319 0.78932 1.90763 1.43776 1.68090 1.43565 1.20265 0.92315 0.93077 1.04905 1.19953 0.89768 1.05719 0.92694 1.20866 0.95875 1.07316 0.98597 1.20926 0.96433 1.08242 0.97044 1.20979 0.90223 1.06826 0.95565 1.24896 0.96169 0.97888 0.97197 1.86439 1.90641 1.26065 1.33337 0.93091 0.73953 0.88190 0.73323 1.41888 1.07386 1.47322 1.16692 1.23748 0.99566 0.98387 0.97861 0.82791 0.85526 0.82629 0.81196 0.81127 0.85632 0.89777 0.73999 0.85096 0.83608 0.84180 0.82977 0.88288 0.75214 1.22479 1.21894 0.74412 0.92942 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.30 10.62 113.37 1.20 8.50 16 2 S 2.40 -7.28 5.35 -56.49 -0.30 -7.58 16 3 O -1.00 -7.30 18.10 -127.37 -2.31 -9.61 16 4 O -0.99 -6.57 18.10 -127.37 -2.30 -8.88 16 5 C -0.58 6.71 5.64 71.98 0.41 7.12 16 6 C -0.11 0.56 3.66 -10.27 -0.04 0.52 16 7 H 0.09 -0.13 8.13 -2.39 -0.02 -0.15 16 8 C -0.11 0.96 7.39 31.12 0.23 1.19 16 9 C 0.11 -0.21 4.24 45.52 0.19 -0.01 16 10 H 0.09 0.43 7.46 -2.39 -0.02 0.41 16 11 N -0.70 3.66 5.35 -440.03 -2.36 1.31 16 12 C 0.51 0.82 7.82 87.66 0.69 1.50 16 13 O -0.58 -8.05 15.63 -3.04 -0.05 -8.10 16 14 C -0.07 0.34 6.24 29.10 0.18 0.52 16 15 C 0.03 0.09 5.66 41.08 0.23 0.33 16 16 C -0.20 -1.15 10.77 22.14 0.24 -0.91 16 17 C -0.20 -1.05 9.37 22.14 0.21 -0.84 16 18 C -0.02 -0.10 6.50 41.08 0.27 0.17 16 19 C -0.05 -0.12 3.08 71.24 0.22 0.10 16 20 O -0.56 -0.61 12.88 -148.98 -1.92 -2.52 16 21 Si 0.81 0.46 30.60 68.60 2.10 2.56 16 22 N -0.54 -1.64 6.07 -171.11 -1.04 -2.68 16 23 C -0.16 0.25 7.43 31.12 0.23 0.48 16 24 H 0.15 -2.47 8.14 -2.39 -0.02 -2.49 16 25 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 26 H 0.16 -2.55 8.14 -2.39 -0.02 -2.57 16 27 H 0.17 -3.12 7.84 -2.39 -0.02 -3.14 16 28 H 0.17 -3.05 8.14 -2.39 -0.02 -3.07 16 29 H 0.13 -1.89 8.08 -2.39 -0.02 -1.90 16 30 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.42 -5.73 8.73 -92.71 -0.81 -6.54 16 32 H 0.13 -1.49 8.14 -2.38 -0.02 -1.50 16 33 H 0.15 -1.56 8.14 -2.39 -0.02 -1.58 16 34 H 0.14 0.52 8.06 -2.91 -0.02 0.49 16 35 H 0.15 0.22 6.24 -2.91 -0.02 0.21 16 36 H 0.10 0.39 7.96 -2.38 -0.02 0.38 16 37 H 0.40 -2.72 8.70 -74.06 -0.64 -3.36 16 38 H -0.30 -2.27 7.11 99.48 0.71 -1.56 16 39 H -0.29 -1.86 7.11 99.48 0.71 -1.16 16 40 H 0.42 -0.21 8.96 -92.71 -0.83 -1.04 16 41 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.11 -0.69 7.89 -2.39 -0.02 -0.71 16 Total: 0.00 -42.71 367.91 -5.10 -47.81 By element: Atomic # 1 Polarization: -29.80 SS G_CDS: -1.18 Total: -30.98 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 4.26 Total: 18.66 kcal Atomic # 7 Polarization: 2.02 SS G_CDS: -3.40 Total: -1.37 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -6.58 Total: -29.11 kcal Atomic # 14 Polarization: 0.46 SS G_CDS: 2.10 Total: 2.56 kcal Atomic # 16 Polarization: -7.28 SS G_CDS: -0.30 Total: -7.58 kcal Total: -42.71 -5.10 -47.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.197 kcal (2) G-P(sol) polarization free energy of solvation -42.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds