Wall clock time and date at job start Tue Mar 9 2021 12:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42096 * 108.57830 * 2 1 4 4 O 1.42101 * 108.57504 * 228.97631 * 2 1 3 5 5 C 1.81398 * 101.91995 * 114.49056 * 2 1 3 6 6 C 1.53008 * 109.46816 * 179.97438 * 5 2 1 7 7 H 1.08996 * 112.84872 * 43.80590 * 6 5 2 8 8 C 1.53784 * 113.61084 * 174.99914 * 6 5 2 9 9 C 1.53781 * 87.07674 * 139.97948 * 8 6 5 10 10 H 1.09003 * 113.61195 * 89.20563 * 9 8 6 11 11 N 1.46499 * 113.61184 * 220.01391 * 9 8 6 12 12 C 1.34776 * 119.99942 * 203.47279 * 11 9 8 13 13 O 1.21283 * 120.00131 * 0.02562 * 12 11 9 14 14 C 1.50705 * 120.00027 * 179.97438 * 12 11 9 15 15 C 1.53537 * 109.82311 * 280.00300 * 14 12 11 16 16 C 1.53043 * 108.71550 * 179.35334 * 15 14 12 17 17 C 1.50630 * 110.09486 * 49.49702 * 16 15 14 18 18 C 1.50698 * 118.46961 * 160.00617 * 17 16 15 19 19 O 1.42905 * 109.46745 * 70.08721 * 18 17 16 20 20 Si 1.86298 * 109.47359 * 190.08452 * 18 17 16 21 21 C 1.31115 * 122.98350 * 340.10177 * 17 16 15 22 22 N 1.38927 * 121.84635 * 0.30936 * 21 17 16 23 23 C 1.53776 * 87.17558 * 334.61040 * 9 8 6 24 24 H 1.08997 * 109.47007 * 305.51379 * 1 2 3 25 25 H 1.09003 * 109.47018 * 65.51054 * 1 2 3 26 26 H 1.08996 * 109.46971 * 185.51073 * 1 2 3 27 27 H 1.08999 * 109.47050 * 59.99900 * 5 2 1 28 28 H 1.08999 * 109.47173 * 299.99524 * 5 2 1 29 29 H 1.09004 * 113.61520 * 25.43229 * 8 6 5 30 30 H 1.09000 * 113.60950 * 254.53107 * 8 6 5 31 31 H 0.96999 * 120.00272 * 23.47715 * 11 9 8 32 32 H 1.08999 * 109.81020 * 40.86680 * 14 12 11 33 33 H 1.09002 * 109.62272 * 299.17059 * 15 14 12 34 34 H 1.09001 * 109.62157 * 59.54237 * 15 14 12 35 35 H 1.08996 * 109.32810 * 169.92141 * 16 15 14 36 36 H 1.09000 * 109.32807 * 289.40742 * 16 15 14 37 37 H 1.08994 * 109.47275 * 310.09040 * 18 17 16 38 38 H 0.96695 * 114.00356 * 60.00040 * 19 18 17 39 39 H 1.48499 * 109.99551 * 58.68174 * 20 18 17 40 40 H 1.48494 * 110.00216 * 180.02562 * 20 18 17 41 41 H 1.07998 * 119.07771 * 180.34342 * 21 17 16 42 42 H 0.97003 * 120.55640 * 166.68829 * 22 21 17 43 43 H 1.09001 * 113.61232 * 139.94327 * 23 9 8 44 44 H 1.09002 * 113.61315 * 270.84393 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7978 7 1 4.2206 0.0877 1.4825 8 6 4.1318 -1.3183 3.1887 9 6 5.2283 -2.1273 2.4759 10 1 6.1613 -1.5788 2.3467 11 7 5.4283 -3.4658 3.0369 12 6 6.6067 -4.0979 2.8682 13 8 7.5015 -3.5585 2.2524 14 6 6.8127 -5.4746 3.4457 15 6 7.1334 -5.3683 4.9435 16 6 7.3215 -6.7788 5.5067 17 6 8.2707 -7.5609 4.6372 18 6 8.9482 -8.7731 5.2226 19 8 7.9853 -9.8120 5.4116 20 14 10.2785 -9.3634 4.0597 21 6 8.5354 -7.2339 3.3954 22 7 7.9562 -6.1257 2.7898 23 6 4.3258 -2.1096 1.2310 24 1 -0.3633 0.5970 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 1.7610 -1.7370 1.6663 28 1 1.7611 -0.1172 2.4042 29 1 3.3812 -1.9380 3.6794 30 1 4.5202 -0.5309 3.8347 31 1 4.7128 -3.8971 3.5296 32 1 5.9137 -6.0739 3.3019 33 1 8.0493 -4.7937 5.0818 34 1 6.3101 -4.8747 5.4599 35 1 7.7227 -6.7128 6.5180 36 1 6.3577 -7.2870 5.5360 37 1 9.3941 -8.5121 6.1823 38 1 7.5474 -10.0953 4.5974 39 1 11.2690 -8.2811 3.8299 40 1 10.9538 -10.5589 4.6253 41 1 9.2225 -7.8432 2.8271 42 1 8.3006 -5.7871 1.9487 43 1 4.8706 -1.9603 0.2988 44 1 3.6283 -2.9460 1.1854 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_15413834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:45 Heat of formation + Delta-G solvation = -97.101034 kcal Electronic energy + Delta-G solvation = -26294.159881 eV Core-core repulsion = 22341.269687 eV Total energy + Delta-G solvation = -3952.890194 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.58174 -40.25481 -39.10986 -37.96543 -37.30362 -36.99260 -35.01564 -33.17802 -32.94087 -31.00425 -30.09887 -27.56017 -26.74519 -25.46631 -24.27942 -23.28574 -21.72409 -20.81337 -19.79490 -19.33216 -18.98300 -17.97079 -17.86145 -17.42377 -17.00824 -16.93345 -16.63458 -16.25174 -16.21063 -15.95050 -15.66439 -15.19268 -15.10408 -14.70184 -14.31298 -14.11708 -14.04006 -14.02711 -13.89722 -13.60489 -13.44249 -13.20119 -13.05600 -13.02424 -12.99597 -12.95955 -12.62008 -12.25105 -12.03879 -11.94414 -11.90598 -11.87078 -11.48695 -11.25930 -11.09409 -10.82873 -10.15647 -10.11084 -8.44993 -5.00955 -0.89577 1.34844 1.40158 1.46633 1.63524 1.91175 1.93611 2.00356 2.64514 2.78351 3.12373 3.36898 3.43975 3.53916 3.65899 3.71100 3.74481 3.83707 3.89666 4.04819 4.06879 4.10633 4.18472 4.31949 4.34867 4.46879 4.54217 4.62800 4.65665 4.73394 4.74868 4.77321 4.83072 4.96194 4.99565 5.01669 5.04306 5.18582 5.24250 5.29507 5.51810 5.58099 6.26216 6.48116 6.81698 6.96279 7.12942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.404 3.596 3 O -0.997 6.997 4 O -0.988 6.988 5 C -0.578 4.578 6 C -0.113 4.113 7 H 0.094 0.906 8 C -0.111 4.111 9 C 0.112 3.888 10 H 0.090 0.910 11 N -0.697 5.697 12 C 0.511 3.489 13 O -0.578 6.578 14 C 0.140 3.860 15 C -0.122 4.122 16 C -0.051 4.051 17 C -0.290 4.290 18 C -0.043 4.043 19 O -0.563 6.563 20 Si 0.753 3.247 21 C 0.145 3.855 22 N -0.739 5.739 23 C -0.157 4.157 24 H 0.153 0.847 25 H 0.126 0.874 26 H 0.155 0.845 27 H 0.170 0.830 28 H 0.171 0.829 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.422 0.578 32 H 0.119 0.881 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.392 0.608 39 H -0.298 1.298 40 H -0.307 1.307 41 H 0.147 0.853 42 H 0.407 0.593 43 H 0.055 0.945 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 -1.987 3.325 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.593 3.407 3 O -0.994 6.994 4 O -0.986 6.986 5 C -0.709 4.709 6 C -0.133 4.133 7 H 0.112 0.888 8 C -0.150 4.150 9 C 0.007 3.993 10 H 0.108 0.892 11 N -0.349 5.349 12 C 0.297 3.703 13 O -0.457 6.457 14 C 0.031 3.969 15 C -0.161 4.161 16 C -0.088 4.088 17 C -0.301 4.301 18 C -0.155 4.155 19 O -0.370 6.370 20 Si 0.662 3.338 21 C 0.024 3.976 22 N -0.372 5.372 23 C -0.195 4.195 24 H 0.172 0.828 25 H 0.144 0.856 26 H 0.173 0.827 27 H 0.188 0.812 28 H 0.189 0.811 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.260 0.740 32 H 0.136 0.864 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.242 0.758 39 H -0.226 1.226 40 H -0.236 1.236 41 H 0.163 0.837 42 H 0.243 0.757 43 H 0.074 0.926 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.170 -1.328 2.756 8.724 hybrid contribution -0.159 0.296 0.621 0.706 sum -8.329 -1.032 3.377 9.047 Atomic orbital electron populations 1.30133 1.22504 1.13884 1.12990 1.07877 0.79767 0.74391 0.78634 1.93550 1.81004 1.37191 1.87634 1.93555 1.80765 1.67402 1.56849 1.30126 1.03283 1.16434 1.21101 1.22130 0.92363 0.98758 1.00053 0.88824 1.23341 0.97076 0.99547 0.95010 1.22484 0.98384 0.83467 0.94959 0.89152 1.45768 1.15194 1.17767 1.56196 1.20998 0.82273 0.88056 0.78980 1.90730 1.43655 1.68248 1.43086 1.21123 0.92160 0.90067 0.93543 1.21846 1.02896 0.98510 0.92854 1.20017 0.98678 0.92590 0.97494 1.21067 1.10420 1.03534 0.95065 1.24708 0.98141 0.87371 1.05252 1.86433 1.57725 1.54345 1.38547 0.94410 0.77619 0.76546 0.85224 1.20477 0.95678 0.88674 0.92748 1.44425 1.35102 1.31080 1.26545 1.23776 0.99521 0.98366 0.97862 0.82841 0.85569 0.82684 0.81245 0.81149 0.85683 0.89542 0.73990 0.86368 0.93091 0.87897 0.91753 0.90141 0.89127 0.75836 1.22563 1.23557 0.83687 0.75710 0.92612 0.86945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.66 10.62 113.37 1.20 8.87 16 2 S 2.40 -9.50 5.35 -56.49 -0.30 -9.80 16 3 O -1.00 -6.35 18.10 -127.37 -2.30 -8.65 16 4 O -0.99 -5.51 18.10 -127.37 -2.30 -7.82 16 5 C -0.58 7.28 5.65 71.98 0.41 7.69 16 6 C -0.11 0.72 3.66 -10.21 -0.04 0.69 16 7 H 0.09 -0.28 8.13 -2.39 -0.02 -0.30 16 8 C -0.11 1.11 7.39 31.12 0.23 1.34 16 9 C 0.11 -0.41 4.21 45.52 0.19 -0.22 16 10 H 0.09 0.22 7.50 -2.39 -0.02 0.20 16 11 N -0.70 4.36 5.36 -440.04 -2.36 2.00 16 12 C 0.51 0.20 7.10 87.66 0.62 0.82 16 13 O -0.58 -6.00 15.69 -3.04 -0.05 -6.05 16 14 C 0.14 -0.50 3.36 44.33 0.15 -0.35 16 15 C -0.12 0.44 5.46 30.79 0.17 0.61 16 16 C -0.05 0.11 5.89 29.84 0.18 0.29 16 17 C -0.29 0.18 5.38 -16.63 -0.09 0.09 16 18 C -0.04 -0.03 2.81 71.24 0.20 0.17 16 19 O -0.56 -0.40 12.88 -148.98 -1.92 -2.32 16 20 Si 0.75 -0.04 29.73 68.60 2.04 2.00 16 21 C 0.14 -0.21 9.61 83.41 0.80 0.59 16 22 N -0.74 0.35 5.47 -329.01 -1.80 -1.45 16 23 C -0.16 0.52 7.45 31.18 0.23 0.75 16 24 H 0.15 -2.53 8.14 -2.39 -0.02 -2.55 16 25 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 26 H 0.15 -2.62 8.14 -2.39 -0.02 -2.64 16 27 H 0.17 -3.25 7.85 -2.39 -0.02 -3.27 16 28 H 0.17 -3.19 8.14 -2.39 -0.02 -3.21 16 29 H 0.12 -2.01 8.07 -2.39 -0.02 -2.03 16 30 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.42 -5.84 8.71 -92.71 -0.81 -6.65 16 32 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.10 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.09 0.28 7.96 -2.39 -0.02 0.26 16 38 H 0.39 -3.02 8.70 -74.06 -0.64 -3.67 16 39 H -0.30 -1.83 7.11 99.48 0.71 -1.13 16 40 H -0.31 -2.49 7.11 99.48 0.71 -1.78 16 41 H 0.15 -0.73 4.50 -2.91 -0.01 -0.74 16 42 H 0.41 0.41 8.09 -92.71 -0.75 -0.34 16 43 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.11 -0.83 7.90 -2.39 -0.02 -0.85 16 Total: 0.00 -37.87 370.42 -5.87 -43.74 By element: Atomic # 1 Polarization: -31.86 SS G_CDS: -1.13 Total: -32.98 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 4.25 Total: 21.34 kcal Atomic # 7 Polarization: 4.71 SS G_CDS: -4.16 Total: 0.56 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -6.58 Total: -24.84 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: 2.04 Total: 2.00 kcal Atomic # 16 Polarization: -9.50 SS G_CDS: -0.30 Total: -9.80 kcal Total: -37.87 -5.87 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_15413834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.364 kcal (2) G-P(sol) polarization free energy of solvation -37.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds