Wall clock time and date at job start Tue Mar 9 2021 13:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42096 * 108.57761 * 2 1 4 4 O 1.42103 * 108.57812 * 228.97209 * 2 1 3 5 5 C 1.81394 * 101.91965 * 114.48751 * 2 1 3 6 6 C 1.53005 * 109.47068 * 179.97438 * 5 2 1 7 7 H 1.08994 * 112.84928 * 316.19823 * 6 5 2 8 8 C 1.53955 * 113.73918 * 87.40066 * 6 5 2 9 9 C 1.53787 * 87.01864 * 139.94507 * 8 6 5 10 10 H 1.08999 * 113.61501 * 89.22532 * 9 8 6 11 11 N 1.46499 * 113.61293 * 220.04804 * 9 8 6 12 12 C 1.34776 * 119.99941 * 254.13135 * 11 9 8 13 13 O 1.21283 * 120.00254 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00405 * 180.02562 * 12 11 9 15 15 O 1.42894 * 109.47583 * 180.02562 * 14 12 11 16 16 C 1.35900 * 117.00370 * 179.97438 * 15 14 12 17 17 C 1.38708 * 120.05751 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.02796 * 359.96075 * 17 16 15 19 19 O 1.42906 * 109.46914 * 284.99476 * 18 17 16 20 20 Si 1.86302 * 109.47216 * 165.00159 * 18 17 16 21 21 C 1.38171 * 119.94045 * 180.02562 * 17 16 15 22 22 C 1.38240 * 120.06065 * 359.97438 * 21 17 16 23 23 C 1.38295 * 120.10794 * 0.02562 * 22 21 17 24 24 C 1.38119 * 120.05704 * 0.02562 * 23 22 21 25 25 C 1.53780 * 87.17310 * 334.63832 * 9 8 6 26 26 H 1.08998 * 109.47312 * 305.51003 * 1 2 3 27 27 H 1.09002 * 109.47105 * 65.51459 * 1 2 3 28 28 H 1.08997 * 109.47087 * 185.51450 * 1 2 3 29 29 H 1.09001 * 109.47507 * 60.00187 * 5 2 1 30 30 H 1.09000 * 109.47220 * 299.99631 * 5 2 1 31 31 H 1.09004 * 113.61751 * 25.42860 * 8 6 5 32 32 H 1.09000 * 113.67033 * 254.47130 * 8 6 5 33 33 H 0.97002 * 120.00478 * 74.13960 * 11 9 8 34 34 H 1.09001 * 109.47049 * 59.99786 * 14 12 11 35 35 H 1.08998 * 109.46949 * 300.00530 * 14 12 11 36 36 H 1.08999 * 109.47499 * 44.99882 * 18 17 16 37 37 H 0.96701 * 113.99868 * 180.02562 * 19 18 17 38 38 H 1.48502 * 110.00216 * 59.99591 * 20 18 17 39 39 H 1.48499 * 110.00037 * 181.31735 * 20 18 17 40 40 H 1.08005 * 119.97011 * 180.02562 * 21 17 16 41 41 H 1.07995 * 119.94494 * 180.27435 * 22 21 17 42 42 H 1.07997 * 119.96986 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.02581 * 179.97438 * 24 23 22 44 44 H 1.08993 * 113.61445 * 139.93523 * 25 9 8 45 45 H 1.09006 * 113.61149 * 270.76148 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8196 1.7979 7 1 4.2200 -1.1777 0.9063 8 6 4.3289 0.4539 2.3977 9 6 5.2305 -0.4751 3.2278 10 1 6.1624 -0.7398 2.7283 11 7 5.4329 -0.0192 4.6053 12 6 6.6126 0.5207 4.9699 13 8 7.5067 0.6297 4.1577 14 6 6.8211 0.9891 6.3870 15 8 8.1410 1.5192 6.5243 16 6 8.4929 1.9890 7.7500 17 6 9.7588 2.5179 7.9541 18 6 10.7461 2.5716 6.8168 19 8 11.2632 1.2619 6.5728 20 14 12.1450 3.7184 7.2625 21 6 10.1142 2.9944 9.2014 22 6 9.2093 2.9447 10.2453 23 6 7.9466 2.4177 10.0444 24 6 7.5868 1.9392 8.7997 25 6 4.1317 -1.5417 3.0870 26 1 -0.3634 0.5969 0.8365 27 1 -0.3633 0.4259 -0.9353 28 1 -0.3633 -1.0229 0.0988 29 1 1.7610 -1.7370 1.6665 30 1 1.7610 -0.1170 2.4042 31 1 3.6333 1.0391 2.9992 32 1 4.8742 1.0577 1.6722 33 1 4.7178 -0.1061 5.2549 34 1 6.6937 0.1491 7.0698 35 1 6.0922 1.7640 6.6245 36 1 10.2473 2.9384 5.9197 37 1 11.9066 1.2212 5.8521 38 1 12.8332 3.2293 8.4842 39 1 13.1093 3.8047 6.1365 40 1 11.0997 3.4068 9.3608 41 1 9.4876 3.3217 11.2184 42 1 7.2416 2.3796 10.8616 43 1 6.6007 1.5274 8.6434 44 1 4.5179 -2.5466 2.9172 45 1 3.3827 -1.5040 3.8782 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_2989392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:01 Heat of formation + Delta-G solvation = -105.778993 kcal Electronic energy + Delta-G solvation = -28853.595435 eV Core-core repulsion = 24546.157993 eV Total energy + Delta-G solvation = -4307.437441 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.64581 -41.04754 -39.64023 -38.28768 -38.00617 -37.44313 -37.03976 -34.98439 -32.85029 -31.67135 -31.11572 -30.51663 -29.18541 -26.96185 -26.55932 -24.55999 -23.21837 -22.42455 -21.68459 -20.91521 -19.94589 -19.32021 -18.36777 -18.31195 -17.94928 -17.57596 -17.39902 -17.16011 -17.08491 -16.83640 -16.56165 -16.28026 -15.61045 -15.56115 -15.41596 -15.01575 -14.80853 -14.71282 -14.40324 -14.30575 -13.87205 -13.78570 -13.76958 -13.69381 -13.59431 -13.34463 -13.09693 -13.00760 -12.97324 -12.76991 -12.65992 -12.26549 -12.14194 -12.10365 -11.73694 -11.65343 -11.65111 -11.32696 -10.85712 -10.25687 -10.19391 -9.94741 -9.17185 -4.88608 -1.12853 0.25434 0.45144 1.38671 1.44777 1.46776 1.64490 1.66983 2.01990 2.49062 2.59699 2.68696 2.85460 3.14646 3.19277 3.37552 3.46436 3.51533 3.55699 3.69289 3.71568 3.75008 3.85109 3.87279 3.90687 3.92616 4.01123 4.13190 4.21972 4.28502 4.35820 4.45536 4.51981 4.52973 4.54071 4.55548 4.67323 4.74235 4.90926 4.99389 5.01795 5.28417 5.35213 5.38705 5.52516 5.72430 6.22820 6.37801 6.65121 7.07644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.418 3.582 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.600 4.600 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.153 4.153 9 C 0.124 3.876 10 H 0.121 0.879 11 N -0.719 5.719 12 C 0.517 3.483 13 O -0.508 6.508 14 C 0.039 3.961 15 O -0.279 6.279 16 C 0.151 3.849 17 C -0.100 4.100 18 C -0.067 4.067 19 O -0.531 6.531 20 Si 0.685 3.315 21 C -0.078 4.078 22 C -0.151 4.151 23 C -0.073 4.073 24 C -0.212 4.212 25 C -0.130 4.130 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.402 0.598 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.378 0.622 38 H -0.255 1.255 39 H -0.261 1.261 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.084 0.916 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 -0.003 5.236 9.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.930 6.930 4 O -0.935 6.935 5 C -0.729 4.729 6 C -0.123 4.123 7 H 0.129 0.871 8 C -0.191 4.191 9 C 0.019 3.981 10 H 0.139 0.861 11 N -0.372 5.372 12 C 0.302 3.698 13 O -0.381 6.381 14 C -0.040 4.040 15 O -0.191 6.191 16 C 0.105 3.895 17 C -0.101 4.101 18 C -0.176 4.176 19 O -0.338 6.338 20 Si 0.587 3.413 21 C -0.096 4.096 22 C -0.169 4.169 23 C -0.091 4.091 24 C -0.231 4.231 25 C -0.169 4.169 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.237 0.763 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.225 0.775 38 H -0.180 1.180 39 H -0.186 1.186 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.103 0.897 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.019 0.318 4.406 7.466 hybrid contribution -1.137 -1.426 0.404 1.868 sum -7.155 -1.108 4.810 8.693 Atomic orbital electron populations 1.30301 1.26848 1.11603 1.12029 1.07955 0.78320 0.75999 0.77735 1.93625 1.78831 1.34207 1.86363 1.93626 1.79013 1.67078 1.53759 1.30296 1.04731 1.14195 1.23654 1.22100 0.90831 0.99345 0.99975 0.87060 1.23738 0.99196 0.96347 0.99844 1.22525 0.98883 0.94881 0.81763 0.86117 1.45776 1.15194 1.63648 1.12570 1.20078 0.82604 0.77943 0.89203 1.90788 1.41640 1.53038 1.52652 1.22472 0.85471 1.00273 0.95801 1.86208 1.30014 1.74629 1.28256 1.18782 0.93330 0.93532 0.83876 1.18597 0.92246 1.04210 0.95034 1.24643 1.02591 0.91237 0.99137 1.86597 1.62308 1.27076 1.57778 0.95212 0.78637 0.87064 0.80407 1.20994 0.99731 0.97604 0.91224 1.21051 0.93946 1.02620 0.99296 1.21012 0.96361 0.95523 0.96217 1.21255 1.00126 1.07817 0.93901 1.23370 0.97745 0.98979 0.96816 0.85327 0.85079 0.85319 0.84485 0.84777 0.88769 0.89502 0.76286 0.88864 0.88787 0.90527 0.77470 1.18026 1.18635 0.84782 0.85229 0.85335 0.85283 0.89742 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.20 10.62 101.05 1.07 4.28 16 2 S 2.42 -4.88 5.35 -107.50 -0.58 -5.46 16 3 O -0.93 -1.94 18.10 -57.83 -1.05 -2.99 16 4 O -0.94 -2.21 18.10 -57.83 -1.05 -3.26 16 5 C -0.60 2.97 5.65 37.16 0.21 3.18 16 6 C -0.10 0.28 3.65 -89.71 -0.33 -0.05 16 7 H 0.11 -0.24 8.13 -51.93 -0.42 -0.67 16 8 C -0.15 0.22 7.45 -25.82 -0.19 0.03 16 9 C 0.12 -0.17 4.21 -67.12 -0.28 -0.45 16 10 H 0.12 0.07 7.50 -51.93 -0.39 -0.32 16 11 N -0.72 1.48 5.36 -53.02 -0.28 1.19 16 12 C 0.52 0.77 7.91 -10.99 -0.09 0.68 16 13 O -0.51 -3.34 16.12 -14.36 -0.23 -3.57 16 14 C 0.04 -0.02 5.22 36.01 0.19 0.17 16 15 O -0.28 -1.03 9.00 -39.34 -0.35 -1.39 16 16 C 0.15 0.44 6.66 -39.22 -0.26 0.17 16 17 C -0.10 -0.31 5.30 -104.47 -0.55 -0.86 16 18 C -0.07 -0.18 2.37 36.00 0.09 -0.10 16 19 O -0.53 -2.30 12.86 -35.23 -0.45 -2.75 16 20 Si 0.69 0.46 30.20 -169.99 -5.13 -4.68 16 21 C -0.08 -0.12 8.66 -39.61 -0.34 -0.46 16 22 C -0.15 -0.04 10.04 -39.56 -0.40 -0.44 16 23 C -0.07 0.01 10.04 -39.60 -0.40 -0.38 16 24 C -0.21 -0.09 9.04 -39.43 -0.36 -0.44 16 25 C -0.13 0.49 7.39 -25.92 -0.19 0.30 16 26 H 0.13 -0.85 8.14 -51.92 -0.42 -1.28 16 27 H 0.13 -0.58 8.14 -51.92 -0.42 -1.01 16 28 H 0.13 -0.84 8.14 -51.93 -0.42 -1.26 16 29 H 0.14 -0.98 8.14 -51.92 -0.42 -1.40 16 30 H 0.13 -0.97 7.86 -51.92 -0.41 -1.38 16 31 H 0.09 -0.26 7.91 -51.93 -0.41 -0.67 16 32 H 0.09 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.40 -2.23 8.71 -40.82 -0.36 -2.59 16 34 H 0.09 -0.26 7.66 -51.93 -0.40 -0.66 16 35 H 0.09 -0.31 7.66 -51.93 -0.40 -0.71 16 36 H 0.08 0.21 7.83 -51.93 -0.41 -0.19 16 37 H 0.38 0.22 8.74 45.56 0.40 0.61 16 38 H -0.26 -0.73 6.75 56.52 0.38 -0.35 16 39 H -0.26 -0.73 7.11 56.52 0.40 -0.32 16 40 H 0.13 0.02 4.90 -52.48 -0.26 -0.24 16 41 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 42 H 0.13 -0.33 8.06 -52.49 -0.42 -0.75 16 43 H 0.13 -0.31 6.30 -52.49 -0.33 -0.64 16 44 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 45 H 0.09 -0.52 8.07 -51.93 -0.42 -0.94 16 LS Contribution 389.38 15.07 5.87 5.87 Total: 0.00 -16.48 389.38 -11.49 -27.96 By element: Atomic # 1 Polarization: -10.16 SS G_CDS: -6.40 Total: -16.55 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.83 Total: 5.62 kcal Atomic # 7 Polarization: 1.48 SS G_CDS: -0.28 Total: 1.19 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -3.13 Total: -13.95 kcal Atomic # 14 Polarization: 0.46 SS G_CDS: -5.13 Total: -4.68 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -0.58 Total: -5.46 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -16.48 -11.49 -27.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_2989392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.816 kcal (2) G-P(sol) polarization free energy of solvation -16.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds