Wall clock time and date at job start Tue Mar 9 2021 13:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42096 * 108.57761 * 2 1 4 4 O 1.42103 * 108.57812 * 228.97209 * 2 1 3 5 5 C 1.81394 * 101.91965 * 114.48751 * 2 1 3 6 6 C 1.53005 * 109.47068 * 179.97438 * 5 2 1 7 7 H 1.08994 * 112.84928 * 316.19823 * 6 5 2 8 8 C 1.53955 * 113.73918 * 87.40066 * 6 5 2 9 9 C 1.53787 * 87.01864 * 139.94507 * 8 6 5 10 10 H 1.08999 * 113.61501 * 89.22532 * 9 8 6 11 11 N 1.46499 * 113.61293 * 220.04804 * 9 8 6 12 12 C 1.34776 * 119.99941 * 254.13135 * 11 9 8 13 13 O 1.21283 * 120.00254 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00405 * 180.02562 * 12 11 9 15 15 O 1.42894 * 109.47583 * 180.02562 * 14 12 11 16 16 C 1.35900 * 117.00370 * 179.97438 * 15 14 12 17 17 C 1.38708 * 120.05751 * 180.02562 * 16 15 14 18 18 C 1.50696 * 120.02796 * 359.96075 * 17 16 15 19 19 O 1.42906 * 109.46914 * 284.99476 * 18 17 16 20 20 Si 1.86302 * 109.47216 * 165.00159 * 18 17 16 21 21 C 1.38171 * 119.94045 * 180.02562 * 17 16 15 22 22 C 1.38240 * 120.06065 * 359.97438 * 21 17 16 23 23 C 1.38295 * 120.10794 * 0.02562 * 22 21 17 24 24 C 1.38119 * 120.05704 * 0.02562 * 23 22 21 25 25 C 1.53780 * 87.17310 * 334.63832 * 9 8 6 26 26 H 1.08998 * 109.47312 * 305.51003 * 1 2 3 27 27 H 1.09002 * 109.47105 * 65.51459 * 1 2 3 28 28 H 1.08997 * 109.47087 * 185.51450 * 1 2 3 29 29 H 1.09001 * 109.47507 * 60.00187 * 5 2 1 30 30 H 1.09000 * 109.47220 * 299.99631 * 5 2 1 31 31 H 1.09004 * 113.61751 * 25.42860 * 8 6 5 32 32 H 1.09000 * 113.67033 * 254.47130 * 8 6 5 33 33 H 0.97002 * 120.00478 * 74.13960 * 11 9 8 34 34 H 1.09001 * 109.47049 * 59.99786 * 14 12 11 35 35 H 1.08998 * 109.46949 * 300.00530 * 14 12 11 36 36 H 1.08999 * 109.47499 * 44.99882 * 18 17 16 37 37 H 0.96701 * 113.99868 * 180.02562 * 19 18 17 38 38 H 1.48502 * 110.00216 * 59.99591 * 20 18 17 39 39 H 1.48499 * 110.00037 * 181.31735 * 20 18 17 40 40 H 1.08005 * 119.97011 * 180.02562 * 21 17 16 41 41 H 1.07995 * 119.94494 * 180.27435 * 22 21 17 42 42 H 1.07997 * 119.96986 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.02581 * 179.97438 * 24 23 22 44 44 H 1.08993 * 113.61445 * 139.93523 * 25 9 8 45 45 H 1.09006 * 113.61149 * 270.76148 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7055 -0.8196 1.7979 7 1 4.2200 -1.1777 0.9063 8 6 4.3289 0.4539 2.3977 9 6 5.2305 -0.4751 3.2278 10 1 6.1624 -0.7398 2.7283 11 7 5.4329 -0.0192 4.6053 12 6 6.6126 0.5207 4.9699 13 8 7.5067 0.6297 4.1577 14 6 6.8211 0.9891 6.3870 15 8 8.1410 1.5192 6.5243 16 6 8.4929 1.9890 7.7500 17 6 9.7588 2.5179 7.9541 18 6 10.7461 2.5716 6.8168 19 8 11.2632 1.2619 6.5728 20 14 12.1450 3.7184 7.2625 21 6 10.1142 2.9944 9.2014 22 6 9.2093 2.9447 10.2453 23 6 7.9466 2.4177 10.0444 24 6 7.5868 1.9392 8.7997 25 6 4.1317 -1.5417 3.0870 26 1 -0.3634 0.5969 0.8365 27 1 -0.3633 0.4259 -0.9353 28 1 -0.3633 -1.0229 0.0988 29 1 1.7610 -1.7370 1.6665 30 1 1.7610 -0.1170 2.4042 31 1 3.6333 1.0391 2.9992 32 1 4.8742 1.0577 1.6722 33 1 4.7178 -0.1061 5.2549 34 1 6.6937 0.1491 7.0698 35 1 6.0922 1.7640 6.6245 36 1 10.2473 2.9384 5.9197 37 1 11.9066 1.2212 5.8521 38 1 12.8332 3.2293 8.4842 39 1 13.1093 3.8047 6.1365 40 1 11.0997 3.4068 9.3608 41 1 9.4876 3.3217 11.2184 42 1 7.2416 2.3796 10.8616 43 1 6.6007 1.5274 8.6434 44 1 4.5179 -2.5466 2.9172 45 1 3.3827 -1.5040 3.8782 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_2989392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:00 Heat of formation + Delta-G solvation = -116.171981 kcal Electronic energy + Delta-G solvation = -28854.046108 eV Core-core repulsion = 24546.157993 eV Total energy + Delta-G solvation = -4307.888115 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.67297 -41.01600 -39.63606 -38.38334 -37.97407 -37.63195 -37.00077 -35.00553 -32.89281 -31.54514 -30.99649 -30.22209 -29.10290 -26.77053 -26.66360 -24.47403 -23.17665 -22.47138 -21.71008 -20.75024 -19.80238 -19.33700 -18.61254 -18.29454 -17.85608 -17.47430 -17.40440 -17.08462 -16.99606 -16.85506 -16.48876 -16.16782 -15.68181 -15.57716 -15.46429 -15.08622 -14.80137 -14.61239 -14.04959 -13.95602 -13.90488 -13.83201 -13.64175 -13.60467 -13.45986 -13.23972 -13.09257 -13.05306 -13.00533 -12.66657 -12.63134 -12.11960 -12.04635 -11.94841 -11.82850 -11.77869 -11.51360 -11.13026 -10.94398 -10.45604 -10.16927 -9.96432 -9.21138 -4.98203 -0.90491 0.23377 0.42589 1.26405 1.39681 1.49213 1.55420 1.87354 1.92021 2.58495 2.66896 2.78186 3.11382 3.34276 3.41417 3.43716 3.52043 3.65125 3.71687 3.77915 3.93505 3.96039 4.04297 4.07599 4.10054 4.16154 4.17854 4.25212 4.32959 4.34691 4.52522 4.52739 4.66587 4.70906 4.73269 4.80662 4.93567 4.97595 4.98858 5.02295 5.14950 5.28699 5.39489 5.48268 5.53186 5.76443 6.27233 6.45679 6.54497 7.11396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.403 3.597 3 O -0.989 6.989 4 O -0.997 6.997 5 C -0.577 4.577 6 C -0.112 4.112 7 H 0.093 0.907 8 C -0.158 4.158 9 C 0.112 3.888 10 H 0.088 0.912 11 N -0.696 5.696 12 C 0.511 3.489 13 O -0.574 6.574 14 C 0.036 3.964 15 O -0.314 6.314 16 C 0.128 3.872 17 C -0.131 4.131 18 C -0.086 4.086 19 O -0.557 6.557 20 Si 0.780 3.220 21 C -0.090 4.090 22 C -0.155 4.155 23 C -0.074 4.074 24 C -0.211 4.211 25 C -0.108 4.108 26 H 0.155 0.845 27 H 0.126 0.874 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.114 0.886 32 H 0.053 0.947 33 H 0.424 0.576 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.387 0.613 38 H -0.282 1.282 39 H -0.291 1.291 40 H 0.141 0.859 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.159 0.841 44 H 0.086 0.914 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.150 -0.585 8.427 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.592 3.408 3 O -0.986 6.986 4 O -0.994 6.994 5 C -0.709 4.709 6 C -0.132 4.132 7 H 0.112 0.888 8 C -0.196 4.196 9 C 0.006 3.994 10 H 0.106 0.894 11 N -0.350 5.350 12 C 0.297 3.703 13 O -0.452 6.452 14 C -0.042 4.042 15 O -0.227 6.227 16 C 0.082 3.918 17 C -0.132 4.132 18 C -0.194 4.194 19 O -0.366 6.366 20 Si 0.684 3.316 21 C -0.107 4.107 22 C -0.173 4.173 23 C -0.091 4.091 24 C -0.229 4.229 25 C -0.147 4.147 26 H 0.174 0.826 27 H 0.144 0.856 28 H 0.172 0.828 29 H 0.190 0.810 30 H 0.188 0.812 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.263 0.737 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.082 0.918 37 H 0.237 0.763 38 H -0.209 1.209 39 H -0.219 1.219 40 H 0.158 0.842 41 H 0.169 0.831 42 H 0.176 0.824 43 H 0.177 0.823 44 H 0.105 0.895 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.375 -0.267 7.575 12.056 hybrid contribution -0.201 -1.297 -0.559 1.426 sum -9.576 -1.564 7.016 11.974 Atomic orbital electron populations 1.30126 1.22363 1.13863 1.13065 1.07898 0.79831 0.74469 0.78558 1.93556 1.80798 1.36777 1.87514 1.93551 1.81032 1.67729 1.57083 1.30120 1.03105 1.16454 1.21200 1.22118 0.92476 0.98582 1.00057 0.88849 1.23798 0.99491 0.96779 0.99565 1.22510 0.98427 0.96508 0.81914 0.89401 1.45616 1.14731 1.61897 1.12740 1.20629 0.82631 0.77285 0.89722 1.90763 1.43943 1.55964 1.54540 1.22737 0.84738 1.02121 0.94581 1.86160 1.32186 1.75210 1.29146 1.19061 0.93991 0.94379 0.84343 1.18863 0.92885 1.05740 0.95669 1.25046 1.04088 0.91125 0.99110 1.86548 1.62954 1.28643 1.58422 0.94102 0.75178 0.85226 0.77093 1.21151 1.00506 0.97947 0.91136 1.21403 0.94023 1.02093 0.99772 1.21420 0.96613 0.94348 0.96763 1.21608 1.00870 1.07109 0.93300 1.23339 0.96874 0.97865 0.96665 0.82649 0.85560 0.82789 0.81031 0.81153 0.86743 0.92761 0.73717 0.86160 0.85517 0.91762 0.76326 1.20852 1.21887 0.84169 0.83066 0.82443 0.82324 0.89485 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.46 10.62 113.37 1.20 8.66 16 2 S 2.40 -8.08 5.35 -56.49 -0.30 -8.38 16 3 O -0.99 -6.28 18.10 -127.37 -2.30 -8.59 16 4 O -1.00 -6.97 18.10 -127.37 -2.31 -9.28 16 5 C -0.58 6.98 5.65 71.98 0.41 7.38 16 6 C -0.11 0.61 3.65 -10.20 -0.04 0.57 16 7 H 0.09 -0.18 8.13 -2.39 -0.02 -0.20 16 8 C -0.16 0.29 7.45 31.18 0.23 0.52 16 9 C 0.11 -0.20 4.21 45.52 0.19 -0.01 16 10 H 0.09 0.44 7.50 -2.39 -0.02 0.42 16 11 N -0.70 3.07 5.36 -440.03 -2.36 0.71 16 12 C 0.51 2.15 7.91 87.66 0.69 2.84 16 13 O -0.57 -9.63 16.12 16.00 0.26 -9.37 16 14 C 0.04 -0.05 5.22 71.24 0.37 0.32 16 15 O -0.31 -2.81 9.00 -73.39 -0.66 -3.47 16 16 C 0.13 0.83 6.66 22.51 0.15 0.98 16 17 C -0.13 -1.00 5.30 -19.77 -0.10 -1.10 16 18 C -0.09 -0.70 2.37 71.23 0.17 -0.53 16 19 O -0.56 -6.48 12.86 -148.98 -1.92 -8.39 16 20 Si 0.78 2.13 30.20 68.60 2.07 4.20 16 21 C -0.09 -0.30 8.66 22.25 0.19 -0.11 16 22 C -0.15 0.09 10.04 22.28 0.22 0.32 16 23 C -0.07 0.18 10.04 22.25 0.22 0.40 16 24 C -0.21 0.14 9.04 22.37 0.20 0.34 16 25 C -0.11 0.99 7.39 31.12 0.23 1.22 16 26 H 0.16 -2.59 8.14 -2.39 -0.02 -2.61 16 27 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 28 H 0.15 -2.51 8.14 -2.39 -0.02 -2.53 16 29 H 0.17 -3.15 8.14 -2.39 -0.02 -3.17 16 30 H 0.17 -3.22 7.86 -2.39 -0.02 -3.23 16 31 H 0.11 -0.73 7.91 -2.38 -0.02 -0.75 16 32 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.42 -5.73 8.71 -92.71 -0.81 -6.54 16 34 H 0.12 -0.88 7.66 -2.39 -0.02 -0.89 16 35 H 0.13 -1.08 7.66 -2.39 -0.02 -1.10 16 36 H 0.06 0.59 7.83 -2.39 -0.02 0.57 16 37 H 0.39 1.70 8.74 -74.06 -0.65 1.06 16 38 H -0.28 -1.92 6.75 99.48 0.67 -1.25 16 39 H -0.29 -2.13 7.11 99.48 0.71 -1.43 16 40 H 0.14 0.12 4.90 -2.91 -0.01 0.11 16 41 H 0.15 -0.85 8.06 -2.91 -0.02 -0.87 16 42 H 0.16 -1.34 8.06 -2.91 -0.02 -1.37 16 43 H 0.16 -1.24 6.30 -2.91 -0.02 -1.26 16 44 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 45 H 0.13 -2.00 8.07 -2.38 -0.02 -2.02 16 Total: 0.00 -46.04 389.38 -3.59 -49.63 By element: Atomic # 1 Polarization: -28.43 SS G_CDS: -0.42 Total: -28.85 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 4.35 Total: 21.80 kcal Atomic # 7 Polarization: 3.07 SS G_CDS: -2.36 Total: 0.71 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -6.93 Total: -39.11 kcal Atomic # 14 Polarization: 2.13 SS G_CDS: 2.07 Total: 4.20 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -0.30 Total: -8.38 kcal Total: -46.04 -3.59 -49.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_2989392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.544 kcal (2) G-P(sol) polarization free energy of solvation -46.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds