Wall clock time and date at job start Tue Mar 9 2021 13:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37645 * 125.67398 * 2 1 4 4 C 1.46671 * 126.22631 * 0.02562 * 3 2 1 5 5 O 1.21699 * 119.99775 * 355.11398 * 4 3 2 6 6 N 1.34772 * 119.99873 * 175.11154 * 4 3 2 7 7 C 1.46506 * 119.99872 * 184.69570 * 6 4 3 8 8 H 1.08999 * 112.85142 * 334.66706 * 7 6 4 9 9 C 1.53776 * 113.61247 * 105.86529 * 7 6 4 10 10 C 1.53955 * 87.02109 * 139.95002 * 9 7 6 11 11 H 1.09010 * 113.61167 * 89.19402 * 10 9 7 12 12 C 1.52995 * 113.67183 * 220.06795 * 10 9 7 13 13 S 1.81399 * 109.47122 * 272.56162 * 12 10 9 14 14 C 1.81402 * 101.92416 * 179.97438 * 13 12 10 15 15 O 1.42104 * 108.57872 * 294.48523 * 13 12 10 16 16 O 1.42100 * 108.57945 * 65.50959 * 13 12 10 17 17 C 1.53779 * 113.61404 * 203.47282 * 7 6 4 18 18 C 1.37885 * 107.54473 * 180.02562 * 3 2 1 19 19 C 1.39881 * 107.09444 * 359.76474 * 18 3 2 20 20 Br 1.89098 * 126.07257 * 180.25554 * 19 18 3 21 21 C 1.35502 * 107.84974 * 0.38005 * 19 18 3 22 22 C 1.50699 * 125.56777 * 179.87288 * 21 19 18 23 23 O 1.42902 * 109.47086 * 118.86925 * 22 21 19 24 24 Si 1.86304 * 109.47378 * 238.86831 * 22 21 19 25 25 H 1.09004 * 109.46563 * 275.87408 * 1 2 3 26 26 H 1.08998 * 109.47200 * 35.87088 * 1 2 3 27 27 H 1.08999 * 109.47209 * 155.87985 * 1 2 3 28 28 H 0.97001 * 119.99971 * 4.69841 * 6 4 3 29 29 H 1.09000 * 113.61820 * 254.52725 * 9 7 6 30 30 H 1.09002 * 113.61670 * 25.43093 * 9 7 6 31 31 H 1.09006 * 109.46638 * 32.55615 * 12 10 9 32 32 H 1.08992 * 109.47701 * 152.55902 * 12 10 9 33 33 H 1.08998 * 109.47035 * 59.99382 * 14 13 12 34 34 H 1.08998 * 109.47129 * 179.97438 * 14 13 12 35 35 H 1.08999 * 109.46888 * 299.99903 * 14 13 12 36 36 H 1.08997 * 113.61348 * 334.56847 * 17 7 6 37 37 H 1.08998 * 113.61518 * 105.38505 * 17 7 6 38 38 H 1.08001 * 126.44641 * 180.02562 * 18 3 2 39 39 H 1.09007 * 109.47065 * 358.86748 * 22 21 19 40 40 H 0.96692 * 113.99923 * 59.99685 * 23 22 21 41 41 H 1.48497 * 110.00137 * 56.22746 * 24 22 21 42 42 H 1.48497 * 109.99747 * 177.55073 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8121 2.5123 0.0005 5 8 0.6249 2.7644 -0.0887 6 7 2.7082 3.5141 0.0999 7 6 2.2478 4.9010 0.2041 8 1 1.2615 5.0537 -0.2341 9 6 2.3933 5.4939 1.6155 10 6 2.8420 6.7993 0.9337 11 1 2.0186 7.4729 0.6956 12 6 3.9960 7.5021 1.6515 13 16 3.3314 8.6026 2.9312 14 6 4.8439 9.3134 3.6367 15 8 2.5954 9.6404 2.2983 16 8 2.6977 7.8098 3.9258 17 6 3.2919 5.9327 -0.2543 18 6 3.5782 0.6891 -0.0006 19 6 3.5529 -0.7095 0.0045 20 35 5.0610 -1.8503 0.0130 21 6 2.2558 -1.1015 -0.0005 22 6 1.7714 -2.5285 -0.0002 23 8 0.9972 -2.7685 1.1767 24 14 0.7184 -2.8271 -1.5078 25 1 -0.3632 0.1052 1.0223 26 1 -0.3633 0.8327 -0.6022 27 1 -0.3633 -0.9379 -0.4199 28 1 3.6579 3.3168 0.1024 29 1 1.4484 5.5826 2.1515 30 1 3.1752 5.0205 2.2095 31 1 4.6438 6.7571 2.1136 32 1 4.5695 8.0862 0.9320 33 1 5.3929 9.8442 2.8589 34 1 4.5811 10.0083 4.4342 35 1 5.4665 8.5150 4.0404 36 1 4.3199 5.5795 -0.1725 37 1 3.0721 6.3740 -1.2265 38 1 4.4583 1.3151 -0.0004 39 1 2.6277 -3.2029 -0.0157 40 1 0.2174 -2.2024 1.2567 41 1 1.4835 -2.4936 -2.7360 42 1 0.2831 -4.2462 -1.5502 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_5000100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:18 Heat of formation + Delta-G solvation = -57.576275 kcal Electronic energy + Delta-G solvation = -28013.568396 eV Core-core repulsion = 23749.885600 eV Total energy + Delta-G solvation = -4263.682796 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.028 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.90396 -41.01470 -39.34527 -37.94544 -37.90315 -36.97530 -35.24452 -34.30027 -32.29421 -31.17390 -30.76608 -30.05028 -27.38961 -27.15857 -26.72091 -24.26551 -22.82397 -21.58834 -21.15088 -20.33008 -19.76899 -18.92105 -18.11159 -17.82162 -17.45246 -17.18585 -16.99323 -16.87379 -16.51761 -16.19225 -15.96031 -15.74062 -15.47596 -14.74216 -14.53265 -14.42962 -14.33189 -14.25491 -14.03453 -13.89160 -13.73059 -13.60611 -13.42143 -13.20401 -13.18032 -13.03457 -12.97719 -12.95617 -12.60622 -12.37797 -12.01148 -11.94307 -11.92244 -11.46524 -11.33253 -11.12262 -10.99672 -10.85749 -10.15649 -9.81353 -9.29454 -5.23804 -0.87904 0.13248 0.60128 0.89499 1.17558 1.43226 1.53560 1.81002 1.94188 2.15141 2.27283 2.79652 3.14178 3.16851 3.38532 3.39859 3.45867 3.53679 3.68670 3.72125 3.79787 3.88235 4.09252 4.11413 4.19839 4.25357 4.30590 4.36103 4.40012 4.56586 4.62011 4.68725 4.75987 4.79355 4.84784 4.98782 5.00363 5.07066 5.19421 5.24540 5.52329 5.56765 5.81627 6.41974 6.42469 7.06672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.395 5.395 3 C -0.045 4.045 4 C 0.591 3.409 5 O -0.572 6.572 6 N -0.692 5.692 7 C 0.117 3.883 8 H 0.102 0.898 9 C -0.158 4.158 10 C -0.111 4.111 11 H 0.098 0.902 12 C -0.580 4.580 13 S 2.407 3.593 14 C -0.645 4.645 15 O -0.995 6.995 16 O -0.988 6.988 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.183 4.183 20 Br -0.028 7.028 21 C 0.048 3.952 22 C -0.055 4.055 23 O -0.541 6.541 24 Si 0.754 3.246 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.418 0.582 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.126 0.874 35 H 0.153 0.847 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.180 0.820 39 H 0.127 0.873 40 H 0.389 0.611 41 H -0.283 1.283 42 H -0.267 1.267 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 2.172 -1.865 5.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.068 5.068 3 C -0.159 4.159 4 C 0.379 3.621 5 O -0.453 6.453 6 N -0.343 5.343 7 C 0.012 3.988 8 H 0.120 0.880 9 C -0.197 4.197 10 C -0.131 4.131 11 H 0.116 0.884 12 C -0.711 4.711 13 S 2.596 3.404 14 C -0.797 4.797 15 O -0.992 6.992 16 O -0.985 6.985 17 C -0.152 4.152 18 C -0.131 4.131 19 C -0.269 4.269 20 Br 0.057 6.943 21 C -0.074 4.074 22 C -0.164 4.164 23 O -0.348 6.348 24 Si 0.655 3.345 25 H 0.124 0.876 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.256 0.744 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.185 0.815 32 H 0.188 0.812 33 H 0.171 0.829 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.197 0.803 39 H 0.144 0.856 40 H 0.239 0.761 41 H -0.209 1.209 42 H -0.193 1.193 Dipole moment (debyes) X Y Z Total from point charges 3.662 1.285 -2.272 4.497 hybrid contribution 1.341 0.015 0.240 1.363 sum 5.004 1.299 -2.032 5.555 Atomic orbital electron populations 1.22758 0.73821 1.05765 1.06459 1.43891 1.07894 1.03590 1.51473 1.20074 0.90055 0.87755 1.18004 1.16985 0.85625 0.83692 0.75763 1.90810 1.17413 1.85066 1.51992 1.45513 1.10142 1.05347 1.73333 1.22573 1.00138 0.78952 0.97106 0.88016 1.23796 1.03027 0.95780 0.97076 1.22124 0.96997 0.95783 0.98194 0.88361 1.30135 1.08923 1.15647 1.16398 1.07812 0.79039 0.76347 0.77202 1.30145 1.20285 1.14725 1.14502 1.93552 1.70633 1.57740 1.77272 1.93556 1.74592 1.70789 1.59563 1.23348 1.00143 0.93628 0.98053 1.21509 0.95844 0.92677 1.03077 1.20983 0.91359 0.95076 1.19438 1.96657 1.36039 1.63389 1.98256 1.20837 0.89954 0.90239 1.06382 1.25002 1.01300 0.90263 0.99882 1.86592 1.42274 1.63856 1.42064 0.94394 0.84690 0.82676 0.72721 0.87574 0.87349 0.87133 0.74360 0.92136 0.87381 0.81504 0.81171 0.82878 0.85568 0.82851 0.86115 0.89199 0.80288 0.85593 0.76089 1.20915 1.19299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.29 8.82 127.77 1.13 0.84 16 2 N -0.40 -0.02 3.11 -519.60 -1.61 -1.64 16 3 C -0.04 -0.05 6.89 40.35 0.28 0.23 16 4 C 0.59 1.19 7.77 86.45 0.67 1.86 16 5 O -0.57 -4.59 14.38 -4.34 -0.06 -4.65 16 6 N -0.69 2.97 5.35 -444.00 -2.37 0.60 16 7 C 0.12 -0.45 4.24 45.51 0.19 -0.25 16 8 H 0.10 0.06 7.45 -2.39 -0.02 0.05 16 9 C -0.16 0.52 7.45 31.18 0.23 0.75 16 10 C -0.11 0.73 3.66 -10.21 -0.04 0.69 16 11 H 0.10 -0.39 8.13 -2.38 -0.02 -0.41 16 12 C -0.58 7.09 5.64 71.98 0.41 7.50 16 13 S 2.41 -9.37 5.35 -56.49 -0.30 -9.68 16 14 C -0.64 7.38 10.62 113.37 1.20 8.59 16 15 O -0.99 -6.05 18.10 -127.37 -2.31 -8.36 16 16 O -0.99 -5.55 18.10 -127.37 -2.30 -7.86 16 17 C -0.11 1.10 7.39 31.12 0.23 1.33 16 18 C -0.10 0.05 10.34 22.58 0.23 0.28 16 19 C -0.18 -0.56 6.53 22.03 0.14 -0.41 16 20 Br -0.03 -0.09 33.05 -20.37 -0.67 -0.77 16 21 C 0.05 0.09 5.23 41.34 0.22 0.30 16 22 C -0.05 -0.03 2.88 71.24 0.20 0.17 16 23 O -0.54 -0.01 12.88 -148.98 -1.92 -1.93 16 24 Si 0.75 -1.30 29.65 68.60 2.03 0.74 16 25 H 0.11 -0.85 8.14 -2.38 -0.02 -0.87 16 26 H 0.11 -0.33 6.56 -2.39 -0.02 -0.35 16 27 H 0.11 -1.28 3.98 -2.39 -0.01 -1.29 16 28 H 0.42 -4.30 7.61 -92.71 -0.71 -5.01 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.11 -0.68 7.90 -2.39 -0.02 -0.70 16 31 H 0.17 -3.04 7.85 -2.39 -0.02 -3.06 16 32 H 0.17 -3.12 8.14 -2.39 -0.02 -3.13 16 33 H 0.15 -2.46 8.14 -2.39 -0.02 -2.47 16 34 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 35 H 0.15 -2.47 8.14 -2.39 -0.02 -2.49 16 36 H 0.12 -1.80 8.07 -2.39 -0.02 -1.82 16 37 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H 0.18 -1.22 7.45 -2.91 -0.02 -1.24 16 39 H 0.13 0.32 6.94 -2.38 -0.02 0.30 16 40 H 0.39 -3.13 7.01 -74.06 -0.52 -3.65 16 41 H -0.28 -1.35 7.11 99.48 0.71 -0.64 16 42 H -0.27 -0.89 7.11 99.48 0.71 -0.18 16 Total: 0.00 -36.16 377.56 -4.52 -40.68 By element: Atomic # 1 Polarization: -28.91 SS G_CDS: -0.10 Total: -29.01 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: 5.10 Total: 21.88 kcal Atomic # 7 Polarization: 2.95 SS G_CDS: -3.99 Total: -1.04 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -6.59 Total: -22.80 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: 2.03 Total: 0.74 kcal Atomic # 16 Polarization: -9.37 SS G_CDS: -0.30 Total: -9.68 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -0.67 Total: -0.77 kcal Total: -36.16 -4.52 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_5000100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.898 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds