Wall clock time and date at job start Tue Mar 9 2021 13:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 117.00232 * 2 1 4 4 C 1.39149 * 120.07593 * 179.97438 * 3 2 1 5 5 O 1.35993 * 120.07229 * 0.02562 * 4 3 2 6 6 C 1.42898 * 117.00170 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47374 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99945 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99921 * 179.97438 * 7 6 5 10 10 C 1.46507 * 119.99784 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.84492 * 23.80619 * 10 9 7 12 12 C 1.53773 * 113.61306 * 155.00091 * 10 9 7 13 13 C 1.53777 * 87.07888 * 139.98095 * 12 10 9 14 14 H 1.09004 * 113.61576 * 89.12349 * 13 12 10 15 15 C 1.53008 * 113.61593 * 220.01621 * 13 12 10 16 16 S 1.81404 * 109.47112 * 185.00191 * 15 13 12 17 17 C 1.81395 * 101.91888 * 180.02562 * 16 15 13 18 18 O 1.42095 * 108.57920 * 294.49154 * 16 15 13 19 19 O 1.42096 * 108.57792 * 65.51570 * 16 15 13 20 20 C 1.53772 * 87.08364 * 334.56624 * 13 12 10 21 21 C 1.38569 * 119.85403 * 179.97438 * 4 3 2 22 22 C 1.38244 * 119.99968 * 0.02562 * 21 4 3 23 23 C 1.38249 * 120.14509 * 0.02562 * 22 21 4 24 24 C 1.50693 * 119.92305 * 179.97438 * 23 22 21 25 25 O 1.42907 * 109.47661 * 119.99735 * 24 23 22 26 26 Si 1.86298 * 109.47618 * 359.97438 * 24 23 22 27 27 C 1.38241 * 120.14940 * 0.26331 * 23 22 21 28 28 H 1.09000 * 109.47288 * 300.00066 * 1 2 3 29 29 H 1.09006 * 109.46914 * 59.99713 * 1 2 3 30 30 H 1.08998 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47161 * 299.99908 * 6 5 4 32 32 H 1.09005 * 109.47341 * 59.99342 * 6 5 4 33 33 H 0.96996 * 120.00585 * 0.02562 * 9 7 6 34 34 H 1.08997 * 113.61722 * 254.53404 * 12 10 9 35 35 H 1.09007 * 113.61714 * 25.43729 * 12 10 9 36 36 H 1.08996 * 109.46934 * 305.00549 * 15 13 12 37 37 H 1.08997 * 109.46731 * 65.00347 * 15 13 12 38 38 H 1.08992 * 109.47501 * 59.99806 * 17 16 15 39 39 H 1.09006 * 109.46983 * 180.02562 * 17 16 15 40 40 H 1.09001 * 109.47258 * 299.99753 * 17 16 15 41 41 H 1.08999 * 113.61627 * 270.88034 * 20 13 12 42 42 H 1.09007 * 113.61293 * 139.97617 * 20 13 12 43 43 H 1.08007 * 119.99919 * 179.97438 * 21 4 3 44 44 H 1.07997 * 119.92242 * 179.97438 * 22 21 4 45 45 H 1.09000 * 109.46936 * 239.99359 * 24 23 22 46 46 H 0.96697 * 114.00527 * 179.97438 * 25 24 23 47 47 H 1.48506 * 109.99834 * 298.68714 * 26 24 23 48 48 H 1.48502 * 110.00011 * 59.99978 * 26 24 23 49 49 H 1.08000 * 120.00051 * 179.70694 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6003 0.3006 0.0005 7 6 6.2519 -1.0583 0.0012 8 8 5.5670 -2.0592 0.0011 9 7 7.5957 -1.1612 0.0008 10 6 8.2291 -2.4823 0.0008 11 1 7.5833 -3.2613 -0.4043 12 6 9.6467 -2.4857 -0.5951 13 6 10.0320 -3.4612 0.5295 14 1 9.8797 -4.5089 0.2700 15 6 11.4138 -3.1911 1.1285 16 16 11.8146 -4.4870 2.3330 17 6 13.4584 -3.9735 2.9027 18 8 10.9074 -4.3889 3.4222 19 8 11.9396 -5.7230 1.6434 20 6 8.8779 -2.8543 1.3445 21 6 4.0603 2.5234 0.0000 22 6 3.3029 3.6799 -0.0005 23 6 1.9224 3.6057 0.0000 24 6 1.1018 4.8696 0.0000 25 8 0.2769 4.9021 -1.1665 26 14 2.2365 6.3471 0.0000 27 6 1.2932 2.3748 0.0066 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 5.9065 0.8503 -0.8894 32 1 5.9066 0.8505 0.8905 33 1 8.1435 -0.3608 0.0004 34 1 9.7005 -2.9245 -1.5914 35 1 10.1508 -1.5215 -0.5284 36 1 12.1602 -3.1898 0.3342 37 1 11.4108 -2.2212 1.6258 38 1 13.3950 -2.9807 3.3479 39 1 13.8233 -4.6827 3.6458 40 1 14.1450 -3.9490 2.0565 41 1 9.1718 -1.9909 1.9414 42 1 8.3110 -3.5908 1.9140 43 1 5.1387 2.5840 0.0008 44 1 3.7908 4.6434 -0.0005 45 1 0.4732 4.8946 0.8902 46 1 -0.2804 5.6895 -1.2324 47 1 3.0772 6.3418 1.2242 48 1 3.0993 6.3249 -1.2085 49 1 0.2146 2.3197 0.0118 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:23 Heat of formation + Delta-G solvation = -151.061874 kcal Electronic energy + Delta-G solvation = -32774.674871 eV Core-core repulsion = 27991.054006 eV Total energy + Delta-G solvation = -4783.620865 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.137 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.94467 -41.28243 -40.00279 -39.16547 -38.76919 -37.98814 -37.05055 -37.01361 -35.03666 -32.28466 -31.65859 -31.23674 -30.27725 -29.31428 -28.49712 -26.78026 -26.22344 -24.42614 -23.41689 -22.48486 -21.77506 -20.78523 -19.86709 -19.80177 -18.58996 -18.43603 -18.19723 -17.85413 -17.62045 -17.57712 -17.34530 -17.01859 -16.70618 -16.65303 -16.32366 -16.14080 -15.88881 -15.60307 -15.55750 -15.39480 -14.63344 -14.48776 -14.21690 -14.06226 -14.03460 -13.91891 -13.66224 -13.64322 -13.59143 -13.47687 -13.24707 -13.08312 -13.01905 -12.83715 -12.67281 -12.44742 -12.33209 -12.25707 -12.12132 -12.05144 -11.96043 -11.84002 -11.53269 -11.15398 -10.98001 -10.32556 -10.19228 -9.89895 -9.03524 -4.89733 -0.91952 0.03642 0.10157 1.32249 1.36089 1.40518 1.68582 1.90507 1.99061 2.21109 2.39875 2.48590 2.76223 3.09917 3.33044 3.35444 3.40371 3.45508 3.61105 3.65007 3.68955 3.72648 3.83489 3.90951 4.01044 4.03891 4.08671 4.09846 4.15259 4.16340 4.26598 4.27930 4.31584 4.46233 4.49005 4.51685 4.62767 4.69314 4.71672 4.79264 4.84932 4.91792 4.92342 4.97432 5.01093 5.12882 5.22473 5.42184 5.46970 5.85949 6.34137 6.44868 6.91360 7.08489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.083 3.917 4 C 0.084 3.916 5 O -0.311 6.311 6 C 0.033 3.967 7 C 0.512 3.488 8 O -0.574 6.574 9 N -0.695 5.695 10 C 0.110 3.890 11 H 0.089 0.911 12 C -0.108 4.108 13 C -0.112 4.112 14 H 0.094 0.906 15 C -0.577 4.577 16 S 2.402 3.598 17 C -0.642 4.642 18 O -0.989 6.989 19 O -0.996 6.996 20 C -0.159 4.159 21 C -0.159 4.159 22 C -0.133 4.133 23 C -0.085 4.085 24 C -0.082 4.082 25 O -0.565 6.565 26 Si 0.779 3.221 27 C -0.148 4.148 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.424 0.576 34 H 0.087 0.913 35 H 0.127 0.873 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.155 0.845 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.114 0.886 42 H 0.054 0.946 43 H 0.174 0.826 44 H 0.133 0.867 45 H 0.093 0.907 46 H 0.404 0.596 47 H -0.282 1.282 48 H -0.293 1.293 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.582 13.017 -0.705 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.038 3.962 4 C 0.038 3.962 5 O -0.225 6.225 6 C -0.045 4.045 7 C 0.298 3.702 8 O -0.452 6.452 9 N -0.349 5.349 10 C 0.005 3.995 11 H 0.108 0.892 12 C -0.147 4.147 13 C -0.132 4.132 14 H 0.112 0.888 15 C -0.709 4.709 16 S 2.591 3.409 17 C -0.794 4.794 18 O -0.987 6.987 19 O -0.993 6.993 20 C -0.197 4.197 21 C -0.177 4.177 22 C -0.151 4.151 23 C -0.086 4.086 24 C -0.191 4.191 25 O -0.375 6.375 26 Si 0.684 3.316 27 C -0.167 4.167 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.263 0.737 34 H 0.106 0.894 35 H 0.146 0.854 36 H 0.190 0.810 37 H 0.188 0.812 38 H 0.173 0.827 39 H 0.145 0.855 40 H 0.173 0.827 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.191 0.809 44 H 0.150 0.850 45 H 0.111 0.889 46 H 0.255 0.745 47 H -0.209 1.209 48 H -0.221 1.221 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.692 10.846 -0.523 12.260 hybrid contribution 0.208 -0.122 0.033 0.243 sum 5.900 10.725 -0.489 12.250 Atomic orbital electron populations 1.23344 0.76465 1.05452 1.02324 1.86199 1.23350 1.26216 1.88895 1.18664 0.89789 0.85814 1.01956 1.18505 0.88425 0.86266 1.02965 1.86229 1.18294 1.28679 1.89287 1.22806 0.79338 0.95431 1.06904 1.20582 0.83404 0.90636 0.75596 1.90777 1.64229 1.40195 1.49987 1.45608 1.04858 1.10055 1.74389 1.22535 0.93940 0.85297 0.97686 0.89248 1.23348 0.92198 1.01047 0.98140 1.22089 0.91592 1.00884 0.98659 0.88780 1.30124 1.05428 1.18592 1.16741 1.07924 0.78756 0.77518 0.76661 1.30126 1.20817 1.14273 1.14199 1.93556 1.63293 1.87714 1.54096 1.93550 1.87411 1.42930 1.75442 1.23778 0.96830 1.02068 0.97057 1.21268 1.02056 0.89393 1.05014 1.20799 0.93185 0.98248 1.02879 1.19504 0.93467 0.94500 1.01091 1.24902 1.00404 1.02211 0.91578 1.86442 1.59290 1.49574 1.42235 0.94262 0.78617 0.82129 0.76595 1.21067 1.00948 0.90079 1.04559 0.91316 0.91703 0.86841 0.85602 0.85583 0.73686 0.89412 0.85437 0.80983 0.81194 0.82662 0.85530 0.82745 0.86730 0.92752 0.80919 0.84952 0.88879 0.74502 1.20946 1.22050 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.33 -4.38 10.28 -79.63 -0.82 -5.20 16 3 C 0.08 0.94 6.70 22.57 0.15 1.09 16 4 C 0.08 0.79 6.70 22.57 0.15 0.94 16 5 O -0.31 -3.60 9.45 -67.06 -0.63 -4.23 16 6 C 0.03 0.00 5.22 71.24 0.37 0.38 16 7 C 0.51 2.84 7.91 87.66 0.69 3.53 16 8 O -0.57 -10.63 16.10 15.99 0.26 -10.38 16 9 N -0.70 2.39 5.35 -440.04 -2.36 0.03 16 10 C 0.11 -0.10 4.24 45.51 0.19 0.09 16 11 H 0.09 0.52 7.46 -2.39 -0.02 0.50 16 12 C -0.11 0.92 7.39 31.12 0.23 1.15 16 13 C -0.11 0.54 3.66 -10.27 -0.04 0.50 16 14 H 0.09 -0.13 8.13 -2.38 -0.02 -0.15 16 15 C -0.58 6.64 5.64 71.98 0.41 7.05 16 16 S 2.40 -6.70 5.35 -56.49 -0.30 -7.00 16 17 C -0.64 7.15 10.62 113.37 1.20 8.36 16 18 O -0.99 -6.90 18.10 -127.37 -2.30 -9.20 16 19 O -1.00 -7.44 18.10 -127.37 -2.31 -9.75 16 20 C -0.16 0.16 7.43 31.12 0.23 0.40 16 21 C -0.16 -0.47 9.04 22.35 0.20 -0.27 16 22 C -0.13 -0.55 8.66 22.27 0.19 -0.35 16 23 C -0.09 -0.44 5.42 -19.86 -0.11 -0.55 16 24 C -0.08 0.09 2.81 71.23 0.20 0.29 16 25 O -0.57 0.43 12.75 -148.98 -1.90 -1.47 16 26 Si 0.78 -3.01 29.78 68.60 2.04 -0.97 16 27 C -0.15 -1.05 8.60 22.35 0.19 -0.85 16 28 H 0.07 0.03 7.65 -2.39 -0.02 0.01 16 29 H 0.06 0.10 7.68 -2.38 -0.02 0.08 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.13 -0.86 7.66 -2.39 -0.02 -0.88 16 32 H 0.13 -0.87 7.66 -2.38 -0.02 -0.89 16 33 H 0.42 -5.39 8.73 -92.71 -0.81 -6.20 16 34 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H 0.13 -1.92 8.08 -2.38 -0.02 -1.94 16 36 H 0.17 -3.08 8.14 -2.39 -0.02 -3.10 16 37 H 0.17 -3.10 7.84 -2.39 -0.02 -3.12 16 38 H 0.16 -2.51 8.14 -2.39 -0.02 -2.53 16 39 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 40 H 0.15 -2.46 8.14 -2.39 -0.02 -2.48 16 41 H 0.11 -0.65 7.90 -2.39 -0.02 -0.67 16 42 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 43 H 0.17 -0.95 6.30 -2.91 -0.02 -0.97 16 44 H 0.13 0.18 4.87 -2.91 -0.01 0.17 16 45 H 0.09 -0.47 7.96 -2.39 -0.02 -0.48 16 46 H 0.40 -4.64 8.74 -74.06 -0.65 -5.29 16 47 H -0.28 -0.18 7.11 99.48 0.71 0.52 16 48 H -0.29 -0.93 7.11 99.48 0.71 -0.22 16 49 H 0.15 0.56 6.30 -2.91 -0.02 0.54 16 Total: 0.00 -50.59 419.28 -3.35 -53.93 By element: Atomic # 1 Polarization: -28.28 SS G_CDS: -0.42 Total: -28.69 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 5.39 Total: 22.92 kcal Atomic # 7 Polarization: 2.39 SS G_CDS: -2.36 Total: 0.03 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -7.70 Total: -40.23 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.04 Total: -0.97 kcal Atomic # 16 Polarization: -6.70 SS G_CDS: -0.30 Total: -7.00 kcal Total: -50.59 -3.35 -53.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.127 kcal (2) G-P(sol) polarization free energy of solvation -50.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds