Wall clock time and date at job start Tue Mar 9 2021 13:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42096 * 108.58010 * 2 1 4 4 O 1.42093 * 108.57985 * 228.96658 * 2 1 3 5 5 C 1.81406 * 101.91787 * 114.48329 * 2 1 3 6 6 C 1.52999 * 109.46985 * 179.97438 * 5 2 1 7 7 H 1.09005 * 112.85066 * 43.80707 * 6 5 2 8 8 C 1.53787 * 113.61615 * 174.99915 * 6 5 2 9 9 C 1.53781 * 87.07987 * 139.98149 * 8 6 5 10 10 H 1.09002 * 113.61228 * 89.11929 * 9 8 6 11 11 N 1.46500 * 113.61339 * 219.93875 * 9 8 6 12 12 C 1.34781 * 119.99985 * 203.47543 * 11 9 8 13 13 O 1.21694 * 119.99878 * 359.97438 * 12 11 9 14 14 C 1.46674 * 120.00046 * 179.97438 * 12 11 9 15 15 C 1.37868 * 126.23399 * 179.68748 * 14 12 11 16 16 C 1.39841 * 107.08888 * 179.85209 * 15 14 12 17 17 C 1.35452 * 107.85740 * 0.41520 * 16 15 14 18 18 C 1.50708 * 125.55857 * 179.77587 * 17 16 15 19 19 O 1.42899 * 109.46908 * 119.96307 * 18 17 16 20 20 Si 1.86297 * 109.47115 * 359.95995 * 18 17 16 21 21 N 1.35528 * 108.87554 * 359.74418 * 17 16 15 22 22 C 1.53779 * 113.61451 * 272.49869 * 6 5 2 23 23 H 1.08994 * 109.47399 * 305.51828 * 1 2 3 24 24 H 1.09003 * 109.46791 * 65.51942 * 1 2 3 25 25 H 1.08998 * 109.47018 * 185.51262 * 1 2 3 26 26 H 1.09003 * 109.46973 * 60.00128 * 5 2 1 27 27 H 1.08995 * 109.47030 * 299.99897 * 5 2 1 28 28 H 1.09005 * 113.61051 * 25.43553 * 8 6 5 29 29 H 1.08996 * 113.69311 * 254.54182 * 8 6 5 30 30 H 0.96998 * 120.00149 * 23.46564 * 11 9 8 31 31 H 1.08003 * 126.45777 * 359.96571 * 15 14 12 32 32 H 1.07995 * 126.07223 * 180.14124 * 16 15 14 33 33 H 1.09000 * 109.46861 * 239.95713 * 18 17 16 34 34 H 0.96702 * 113.99892 * 299.99850 * 19 18 17 35 35 H 1.48503 * 109.99862 * 58.68332 * 20 18 17 36 36 H 1.48501 * 109.99610 * 179.97438 * 20 18 17 37 37 H 0.97005 * 125.67581 * 180.02562 * 21 17 16 38 38 H 1.09003 * 113.61775 * 105.47647 * 22 6 5 39 39 H 1.08996 * 113.61960 * 334.56374 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1886 -0.7356 1.6154 6 6 3.7053 -0.8195 1.7981 7 1 4.2205 0.0878 1.4827 8 6 4.1316 -1.3180 3.1891 9 6 5.2282 -2.1271 2.4764 10 1 6.1607 -1.5780 2.3458 11 7 5.4295 -3.4648 3.0387 12 6 6.6082 -4.0964 2.8699 13 8 7.5050 -3.5555 2.2501 14 6 6.8100 -5.4355 3.4333 15 6 7.9546 -6.1975 3.3338 16 6 7.7117 -7.3948 4.0142 17 6 6.4476 -7.3481 4.4987 18 6 5.7730 -8.4363 5.2936 19 8 5.3998 -7.9279 6.5759 20 14 6.9474 -9.8662 5.5102 21 7 5.8889 -6.1629 4.1525 22 6 4.3235 -2.1092 1.2330 23 1 -0.3634 0.5970 0.8364 24 1 -0.3633 0.4259 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 1.7609 -1.7369 1.6666 27 1 1.7609 -0.1169 2.4042 28 1 3.3810 -1.9377 3.6797 29 1 4.5201 -0.5316 3.8361 30 1 4.7146 -3.8960 3.5325 31 1 8.8677 -5.9210 2.8274 32 1 8.4068 -8.2133 4.1290 33 1 4.8825 -8.7745 4.7637 34 1 6.1441 -7.6083 7.1041 35 1 8.1794 -9.4111 6.2033 36 1 6.2941 -10.9458 6.2931 37 1 4.9897 -5.8749 4.3750 38 1 4.8669 -1.9606 0.2998 39 1 3.6254 -2.9452 1.1889 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_6580494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:39 Heat of formation + Delta-G solvation = -61.141298 kcal Electronic energy + Delta-G solvation = -23732.089272 eV Core-core repulsion = 19963.607507 eV Total energy + Delta-G solvation = -3768.481765 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.55931 -41.07309 -39.34358 -38.00755 -37.92372 -37.04157 -35.03584 -32.30449 -31.66136 -31.07685 -30.37416 -27.08955 -26.96504 -24.60792 -22.75453 -21.56567 -21.44228 -20.87780 -19.95521 -19.76445 -18.25477 -18.01469 -17.56682 -17.17264 -16.82953 -16.73629 -16.42862 -16.21800 -16.01413 -15.29443 -15.19720 -14.98275 -14.50320 -14.40134 -14.37468 -14.29360 -14.00061 -13.89398 -13.72525 -13.65753 -13.33970 -13.09692 -13.00785 -12.77210 -12.40398 -12.28574 -12.10570 -11.95172 -11.65940 -11.35748 -11.19382 -10.90212 -10.22782 -10.10384 -9.29699 -5.00917 -1.12898 0.32844 1.07363 1.53302 1.56912 1.64338 1.79056 1.95950 2.10778 2.34378 2.54180 2.85362 3.13615 3.14578 3.19741 3.39581 3.48570 3.52562 3.69124 3.71914 3.73954 3.87714 4.00892 4.19925 4.21557 4.24913 4.36940 4.44423 4.51793 4.53793 4.55632 4.73278 4.90977 4.96574 5.01941 5.06851 5.33680 5.56317 5.79979 6.14458 6.18797 6.37827 7.08498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.420 3.580 3 O -0.937 6.937 4 O -0.933 6.933 5 C -0.601 4.601 6 C -0.102 4.102 7 H 0.112 0.888 8 C -0.131 4.131 9 C 0.124 3.876 10 H 0.123 0.877 11 N -0.723 5.723 12 C 0.591 3.409 13 O -0.521 6.521 14 C -0.052 4.052 15 C -0.097 4.097 16 C -0.198 4.198 17 C 0.023 3.977 18 C -0.061 4.061 19 O -0.535 6.535 20 Si 0.718 3.282 21 N -0.524 5.524 22 C -0.152 4.152 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.395 0.605 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.380 0.620 35 H -0.255 1.255 36 H -0.256 1.256 37 H 0.416 0.584 38 H 0.087 0.913 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 -3.065 3.438 6.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.601 3.399 3 O -0.935 6.935 4 O -0.930 6.930 5 C -0.729 4.729 6 C -0.122 4.122 7 H 0.130 0.870 8 C -0.170 4.170 9 C 0.019 3.981 10 H 0.141 0.859 11 N -0.373 5.373 12 C 0.379 3.621 13 O -0.396 6.396 14 C -0.165 4.165 15 C -0.123 4.123 16 C -0.223 4.223 17 C -0.095 4.095 18 C -0.171 4.171 19 O -0.342 6.342 20 Si 0.617 3.383 21 N -0.121 5.121 22 C -0.191 4.191 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.228 0.772 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.138 0.862 34 H 0.229 0.771 35 H -0.179 1.179 36 H -0.181 1.181 37 H 0.253 0.747 38 H 0.106 0.894 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.163 -2.928 2.699 5.761 hybrid contribution -1.658 0.580 1.831 2.537 sum -5.821 -2.348 4.530 7.740 Atomic orbital electron populations 1.30302 1.26885 1.11569 1.12038 1.07921 0.78288 0.75929 0.77733 1.93624 1.79008 1.34409 1.86419 1.93625 1.78817 1.66880 1.53659 1.30305 1.04743 1.14147 1.23734 1.22071 0.90848 1.00064 0.99191 0.86972 1.23376 0.97783 0.99894 0.95982 1.22535 0.98953 0.82806 0.93822 0.85907 1.45850 1.15364 1.18563 1.57538 1.17097 0.82320 0.83430 0.79283 1.90882 1.42058 1.65915 1.40747 1.20468 0.92788 0.95149 1.08100 1.21353 0.97296 0.92994 1.00682 1.20723 0.95651 1.00175 1.05738 1.21092 0.95045 0.89030 1.04327 1.24918 1.07967 1.00404 0.83776 1.86590 1.37411 1.82549 1.27617 0.94218 0.77011 0.77108 0.89982 1.41927 1.14111 1.14169 1.41862 1.23699 0.99201 0.96786 0.99399 0.85337 0.85068 0.85356 0.84865 0.84520 0.89099 0.89716 0.77162 0.82887 0.83092 0.86217 0.77136 1.17881 1.18055 0.74692 0.89401 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.11 10.62 101.05 1.07 4.19 16 2 S 2.42 -4.69 5.35 -107.50 -0.58 -5.26 16 3 O -0.94 -2.25 18.10 -57.83 -1.05 -3.29 16 4 O -0.93 -2.01 18.10 -57.83 -1.05 -3.06 16 5 C -0.60 2.83 5.64 37.16 0.21 3.04 16 6 C -0.10 0.25 3.66 -89.81 -0.33 -0.07 16 7 H 0.11 -0.24 8.13 -51.93 -0.42 -0.66 16 8 C -0.13 0.44 7.39 -25.92 -0.19 0.25 16 9 C 0.12 -0.13 4.22 -67.12 -0.28 -0.41 16 10 H 0.12 0.08 7.50 -51.93 -0.39 -0.31 16 11 N -0.72 0.83 5.36 -54.32 -0.29 0.54 16 12 C 0.59 1.32 7.79 -12.85 -0.10 1.22 16 13 O -0.52 -3.22 16.50 5.19 0.09 -3.13 16 14 C -0.05 -0.06 7.06 -81.98 -0.58 -0.63 16 15 C -0.10 -0.14 10.65 -39.12 -0.42 -0.55 16 16 C -0.20 0.07 9.32 -39.98 -0.37 -0.30 16 17 C 0.02 -0.03 6.47 -81.95 -0.53 -0.56 16 18 C -0.06 0.13 3.08 36.01 0.11 0.24 16 19 O -0.54 0.50 12.88 -35.23 -0.45 0.05 16 20 Si 0.72 -1.80 30.54 -169.99 -5.19 -6.99 16 21 N -0.52 0.73 5.99 -5.70 -0.03 0.70 16 22 C -0.15 0.17 7.43 -25.92 -0.19 -0.02 16 23 H 0.13 -0.82 8.14 -51.93 -0.42 -1.24 16 24 H 0.13 -0.57 8.14 -51.92 -0.42 -0.99 16 25 H 0.13 -0.83 8.14 -51.92 -0.42 -1.25 16 26 H 0.13 -0.92 7.84 -51.92 -0.41 -1.33 16 27 H 0.14 -0.94 8.14 -51.93 -0.42 -1.37 16 28 H 0.09 -0.45 8.07 -51.93 -0.42 -0.87 16 29 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 30 H 0.39 -1.60 7.84 -40.82 -0.32 -1.92 16 31 H 0.15 0.19 8.06 -52.48 -0.42 -0.23 16 32 H 0.15 -0.35 6.17 -52.49 -0.32 -0.67 16 33 H 0.12 -0.38 7.96 -51.93 -0.41 -0.79 16 34 H 0.38 -1.25 8.70 45.56 0.40 -0.86 16 35 H -0.25 0.07 7.11 56.52 0.40 0.47 16 36 H -0.26 -0.18 7.11 56.52 0.40 0.22 16 37 H 0.42 -1.59 8.19 -40.82 -0.33 -1.92 16 38 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.09 -0.20 7.89 -51.93 -0.41 -0.61 16 LS Contribution 345.56 15.07 5.21 5.21 Total: 0.00 -14.12 345.56 -10.14 -24.27 By element: Atomic # 1 Polarization: -10.23 SS G_CDS: -5.20 Total: -15.43 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -1.60 Total: 6.40 kcal Atomic # 7 Polarization: 1.56 SS G_CDS: -0.33 Total: 1.24 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -2.46 Total: -9.44 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: -5.19 Total: -6.99 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -0.58 Total: -5.26 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -14.12 -10.14 -24.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_6580494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.871 kcal (2) G-P(sol) polarization free energy of solvation -14.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds