Wall clock time and date at job start Tue Mar 9 2021 13:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42096 * 108.58010 * 2 1 4 4 O 1.42093 * 108.57985 * 228.96658 * 2 1 3 5 5 C 1.81406 * 101.91787 * 114.48329 * 2 1 3 6 6 C 1.52999 * 109.46985 * 179.97438 * 5 2 1 7 7 H 1.09005 * 112.85066 * 43.80707 * 6 5 2 8 8 C 1.53787 * 113.61615 * 174.99915 * 6 5 2 9 9 C 1.53781 * 87.07987 * 139.98149 * 8 6 5 10 10 H 1.09002 * 113.61228 * 89.11929 * 9 8 6 11 11 N 1.46500 * 113.61339 * 219.93875 * 9 8 6 12 12 C 1.34781 * 119.99985 * 203.47543 * 11 9 8 13 13 O 1.21694 * 119.99878 * 359.97438 * 12 11 9 14 14 C 1.46674 * 120.00046 * 179.97438 * 12 11 9 15 15 C 1.37868 * 126.23399 * 179.68748 * 14 12 11 16 16 C 1.39841 * 107.08888 * 179.85209 * 15 14 12 17 17 C 1.35452 * 107.85740 * 0.41520 * 16 15 14 18 18 C 1.50708 * 125.55857 * 179.77587 * 17 16 15 19 19 O 1.42899 * 109.46908 * 119.96307 * 18 17 16 20 20 Si 1.86297 * 109.47115 * 359.95995 * 18 17 16 21 21 N 1.35528 * 108.87554 * 359.74418 * 17 16 15 22 22 C 1.53779 * 113.61451 * 272.49869 * 6 5 2 23 23 H 1.08994 * 109.47399 * 305.51828 * 1 2 3 24 24 H 1.09003 * 109.46791 * 65.51942 * 1 2 3 25 25 H 1.08998 * 109.47018 * 185.51262 * 1 2 3 26 26 H 1.09003 * 109.46973 * 60.00128 * 5 2 1 27 27 H 1.08995 * 109.47030 * 299.99897 * 5 2 1 28 28 H 1.09005 * 113.61051 * 25.43553 * 8 6 5 29 29 H 1.08996 * 113.69311 * 254.54182 * 8 6 5 30 30 H 0.96998 * 120.00149 * 23.46564 * 11 9 8 31 31 H 1.08003 * 126.45777 * 359.96571 * 15 14 12 32 32 H 1.07995 * 126.07223 * 180.14124 * 16 15 14 33 33 H 1.09000 * 109.46861 * 239.95713 * 18 17 16 34 34 H 0.96702 * 113.99892 * 299.99850 * 19 18 17 35 35 H 1.48503 * 109.99862 * 58.68332 * 20 18 17 36 36 H 1.48501 * 109.99610 * 179.97438 * 20 18 17 37 37 H 0.97005 * 125.67581 * 180.02562 * 21 17 16 38 38 H 1.09003 * 113.61775 * 105.47647 * 22 6 5 39 39 H 1.08996 * 113.61960 * 334.56374 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1886 -0.7356 1.6154 6 6 3.7053 -0.8195 1.7981 7 1 4.2205 0.0878 1.4827 8 6 4.1316 -1.3180 3.1891 9 6 5.2282 -2.1271 2.4764 10 1 6.1607 -1.5780 2.3458 11 7 5.4295 -3.4648 3.0387 12 6 6.6082 -4.0964 2.8699 13 8 7.5050 -3.5555 2.2501 14 6 6.8100 -5.4355 3.4333 15 6 7.9546 -6.1975 3.3338 16 6 7.7117 -7.3948 4.0142 17 6 6.4476 -7.3481 4.4987 18 6 5.7730 -8.4363 5.2936 19 8 5.3998 -7.9279 6.5759 20 14 6.9474 -9.8662 5.5102 21 7 5.8889 -6.1629 4.1525 22 6 4.3235 -2.1092 1.2330 23 1 -0.3634 0.5970 0.8364 24 1 -0.3633 0.4259 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 1.7609 -1.7369 1.6666 27 1 1.7609 -0.1169 2.4042 28 1 3.3810 -1.9377 3.6797 29 1 4.5201 -0.5316 3.8361 30 1 4.7146 -3.8960 3.5325 31 1 8.8677 -5.9210 2.8274 32 1 8.4068 -8.2133 4.1290 33 1 4.8825 -8.7745 4.7637 34 1 6.1441 -7.6083 7.1041 35 1 8.1794 -9.4111 6.2033 36 1 6.2941 -10.9458 6.2931 37 1 4.9897 -5.8749 4.3750 38 1 4.8669 -1.9606 0.2998 39 1 3.6254 -2.9452 1.1889 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_6580494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:38 Heat of formation + Delta-G solvation = -71.367207 kcal Electronic energy + Delta-G solvation = -23732.532701 eV Core-core repulsion = 19963.607507 eV Total energy + Delta-G solvation = -3768.925194 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.54798 -41.02491 -39.39915 -37.97847 -37.81577 -37.00655 -35.08238 -32.25047 -31.59886 -30.85730 -30.07995 -27.02970 -26.79393 -24.51854 -22.73720 -21.50644 -21.43375 -20.80074 -19.82354 -19.69634 -18.18359 -17.91084 -17.44157 -17.01759 -16.78102 -16.66467 -16.31654 -16.18217 -16.00065 -15.30777 -15.15410 -14.80587 -14.43220 -14.32904 -14.07045 -13.97500 -13.91594 -13.72935 -13.61570 -13.49818 -13.23349 -13.07239 -13.00879 -12.67733 -12.34527 -12.10292 -11.95760 -11.90227 -11.55388 -11.34109 -11.07510 -10.83459 -10.26410 -10.07770 -9.28959 -4.82196 -0.91209 0.27796 1.22865 1.54655 1.70514 1.88637 1.91236 1.99835 2.21635 2.24246 2.76469 3.10674 3.31900 3.35132 3.40824 3.58339 3.60701 3.68584 3.79952 4.03714 4.09049 4.15574 4.25306 4.30579 4.34323 4.50379 4.53017 4.66620 4.70409 4.77852 4.90292 4.95738 4.97709 4.99993 5.10101 5.12551 5.42847 5.58031 5.78103 6.27574 6.40201 6.45633 7.02185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.407 3.593 3 O -0.995 6.995 4 O -0.988 6.988 5 C -0.580 4.580 6 C -0.110 4.110 7 H 0.098 0.902 8 C -0.111 4.111 9 C 0.111 3.889 10 H 0.096 0.904 11 N -0.704 5.704 12 C 0.587 3.413 13 O -0.573 6.573 14 C -0.064 4.064 15 C -0.119 4.119 16 C -0.206 4.206 17 C 0.033 3.967 18 C -0.060 4.060 19 O -0.548 6.548 20 Si 0.792 3.208 21 N -0.510 5.510 22 C -0.158 4.158 23 H 0.153 0.847 24 H 0.126 0.874 25 H 0.154 0.846 26 H 0.167 0.833 27 H 0.171 0.829 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.412 0.588 31 H 0.143 0.857 32 H 0.167 0.833 33 H 0.137 0.863 34 H 0.390 0.610 35 H -0.285 1.285 36 H -0.298 1.298 37 H 0.429 0.571 38 H 0.058 0.942 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.799 -4.047 5.310 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.597 3.403 3 O -0.992 6.992 4 O -0.985 6.985 5 C -0.711 4.711 6 C -0.130 4.130 7 H 0.116 0.884 8 C -0.150 4.150 9 C 0.007 3.993 10 H 0.114 0.886 11 N -0.354 5.354 12 C 0.376 3.624 13 O -0.452 6.452 14 C -0.178 4.178 15 C -0.146 4.146 16 C -0.229 4.229 17 C -0.086 4.086 18 C -0.169 4.169 19 O -0.356 6.356 20 Si 0.696 3.304 21 N -0.108 5.108 22 C -0.196 4.196 23 H 0.172 0.828 24 H 0.145 0.855 25 H 0.172 0.828 26 H 0.185 0.815 27 H 0.189 0.811 28 H 0.139 0.861 29 H 0.107 0.893 30 H 0.249 0.751 31 H 0.161 0.839 32 H 0.185 0.815 33 H 0.155 0.845 34 H 0.239 0.761 35 H -0.211 1.211 36 H -0.226 1.226 37 H 0.269 0.731 38 H 0.077 0.923 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.912 -3.878 4.548 9.137 hybrid contribution -0.848 0.822 1.330 1.779 sum -7.760 -3.056 5.878 10.203 Atomic orbital electron populations 1.30132 1.22517 1.13823 1.13024 1.07795 0.79725 0.74359 0.78468 1.93551 1.80989 1.37113 1.87571 1.93557 1.80758 1.67425 1.56772 1.30137 1.03175 1.16358 1.21418 1.22085 0.92472 0.98741 0.99705 0.88422 1.23345 0.96911 0.99543 0.95243 1.22571 0.98760 0.82934 0.95080 0.88585 1.45702 1.14791 1.18310 1.56640 1.17332 0.82568 0.83798 0.78741 1.90851 1.43905 1.67212 1.43267 1.20273 0.93460 0.94926 1.09099 1.21496 0.97456 0.94167 1.01498 1.20937 0.96418 1.00031 1.05554 1.21266 0.94742 0.89071 1.03504 1.25043 1.08751 0.99675 0.83454 1.86573 1.38362 1.82646 1.28002 0.93288 0.74286 0.74395 0.88480 1.41848 1.14329 1.13685 1.40904 1.23754 0.99469 0.98401 0.97999 0.82844 0.85491 0.82786 0.81479 0.81120 0.86054 0.89272 0.75104 0.83883 0.81544 0.84531 0.76065 1.21074 1.22626 0.73135 0.92313 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.32 10.62 113.37 1.20 8.52 16 2 S 2.41 -8.16 5.35 -56.49 -0.30 -8.46 16 3 O -0.99 -6.72 18.10 -127.37 -2.30 -9.02 16 4 O -0.99 -6.19 18.10 -127.37 -2.30 -8.49 16 5 C -0.58 6.74 5.64 71.98 0.41 7.15 16 6 C -0.11 0.57 3.66 -10.27 -0.04 0.54 16 7 H 0.10 -0.23 8.13 -2.38 -0.02 -0.25 16 8 C -0.11 0.93 7.39 31.12 0.23 1.16 16 9 C 0.11 -0.14 4.22 45.52 0.19 0.06 16 10 H 0.10 0.41 7.50 -2.39 -0.02 0.40 16 11 N -0.70 1.56 5.36 -443.99 -2.38 -0.82 16 12 C 0.59 3.49 7.79 86.45 0.67 4.16 16 13 O -0.57 -8.87 16.50 -4.33 -0.07 -8.94 16 14 C -0.06 -0.18 7.06 40.35 0.28 0.11 16 15 C -0.12 -0.48 10.65 22.57 0.24 -0.24 16 16 C -0.21 0.19 9.32 22.01 0.21 0.40 16 17 C 0.03 -0.11 6.47 41.35 0.27 0.16 16 18 C -0.06 0.36 3.08 71.24 0.22 0.58 16 19 O -0.55 1.95 12.88 -148.98 -1.92 0.03 16 20 Si 0.79 -4.49 30.54 68.60 2.10 -2.39 16 21 N -0.51 1.95 5.99 -171.93 -1.03 0.92 16 22 C -0.16 0.22 7.43 31.12 0.23 0.45 16 23 H 0.15 -2.46 8.14 -2.39 -0.02 -2.47 16 24 H 0.13 -1.22 8.14 -2.39 -0.02 -1.23 16 25 H 0.15 -2.49 8.14 -2.39 -0.02 -2.51 16 26 H 0.17 -3.00 7.84 -2.39 -0.02 -3.02 16 27 H 0.17 -3.05 8.14 -2.39 -0.02 -3.07 16 28 H 0.12 -1.71 8.07 -2.38 -0.02 -1.73 16 29 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.41 -4.00 7.84 -92.71 -0.73 -4.73 16 31 H 0.14 0.74 8.06 -2.91 -0.02 0.72 16 32 H 0.17 -0.84 6.17 -2.91 -0.02 -0.85 16 33 H 0.14 -1.22 7.96 -2.39 -0.02 -1.24 16 34 H 0.39 -3.08 8.70 -74.06 -0.64 -3.73 16 35 H -0.28 0.18 7.11 99.48 0.71 0.89 16 36 H -0.30 -0.51 7.11 99.48 0.71 0.20 16 37 H 0.43 -4.12 8.19 -92.70 -0.76 -4.87 16 38 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 39 H 0.11 -0.56 7.89 -2.39 -0.02 -0.58 16 Total: 0.00 -37.68 345.56 -5.09 -42.77 By element: Atomic # 1 Polarization: -27.64 SS G_CDS: -0.99 Total: -28.62 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 4.12 Total: 23.03 kcal Atomic # 7 Polarization: 3.51 SS G_CDS: -3.41 Total: 0.10 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -6.60 Total: -26.43 kcal Atomic # 14 Polarization: -4.49 SS G_CDS: 2.10 Total: -2.39 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -0.30 Total: -8.46 kcal Total: -37.68 -5.09 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_6580494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.595 kcal (2) G-P(sol) polarization free energy of solvation -37.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds