Wall clock time and date at job start Tue Mar 9 2021 13:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33817 * 122.45012 * 2 1 4 4 C 1.50696 * 124.51969 * 359.96966 * 3 2 1 5 5 O 1.42903 * 109.47423 * 30.00206 * 4 3 2 6 6 Si 1.86299 * 109.47130 * 150.00531 * 4 3 2 7 7 S 1.70615 * 110.95419 * 179.72322 * 3 2 1 8 8 C 1.75836 * 91.56313 * 0.32145 * 7 3 2 9 9 C 1.46579 * 125.45724 * 179.97438 * 8 7 3 10 10 O 1.21703 * 120.00026 * 179.69392 * 9 8 7 11 11 N 1.34777 * 119.99723 * 359.96763 * 9 8 7 12 12 C 1.46505 * 119.99724 * 179.72472 * 11 9 8 13 13 H 1.08997 * 112.84861 * 336.19585 * 12 11 9 14 14 C 1.53774 * 113.61597 * 107.50390 * 12 11 9 15 15 C 1.53781 * 87.08105 * 139.97838 * 14 12 11 16 16 H 1.09000 * 113.61210 * 89.12295 * 15 14 12 17 17 C 1.53003 * 113.61643 * 220.01824 * 15 14 12 18 18 S 1.81404 * 109.47062 * 272.50179 * 17 15 14 19 19 C 1.81398 * 101.92047 * 179.97438 * 18 17 15 20 20 O 1.42100 * 108.57682 * 294.48604 * 18 17 15 21 21 O 1.42099 * 108.58048 * 65.51273 * 18 17 15 22 22 C 1.53778 * 87.08300 * 334.57156 * 15 14 12 23 23 C 1.36652 * 109.08350 * 359.67974 * 8 7 3 24 24 H 1.09001 * 109.47345 * 269.99944 * 1 2 3 25 25 H 1.08996 * 109.46907 * 30.00830 * 1 2 3 26 26 H 1.09006 * 109.46795 * 150.00324 * 1 2 3 27 27 H 1.09003 * 109.47577 * 270.00490 * 4 3 2 28 28 H 0.96698 * 113.99961 * 179.97438 * 5 4 3 29 29 H 1.48507 * 109.99681 * 299.99947 * 6 4 3 30 30 H 1.48502 * 110.00106 * 61.31676 * 6 4 3 31 31 H 0.97000 * 120.00483 * 359.72904 * 11 9 8 32 32 H 1.08994 * 113.61732 * 254.53173 * 14 12 11 33 33 H 1.09001 * 113.61275 * 25.43280 * 14 12 11 34 34 H 1.08997 * 109.47097 * 32.49812 * 17 15 14 35 35 H 1.08996 * 109.47328 * 152.49966 * 17 15 14 36 36 H 1.09004 * 109.47189 * 60.00083 * 19 18 17 37 37 H 1.08994 * 109.47269 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47353 * 300.00281 * 19 18 17 39 39 H 1.09001 * 113.61046 * 270.88089 * 22 15 14 40 40 H 1.08992 * 113.61647 * 139.98216 * 22 15 14 41 41 H 1.08000 * 123.34803 * 180.27390 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 -0.0007 5 8 0.3750 2.4983 0.6725 6 14 2.7921 3.6830 0.8776 7 16 3.8969 0.7892 0.0077 8 6 3.5937 -0.9428 0.0011 9 6 4.6231 -1.9863 0.0029 10 8 4.3001 -3.1597 0.0035 11 7 5.9272 -1.6463 0.0094 12 6 6.9561 -2.6892 0.0173 13 1 6.5968 -3.6351 0.4227 14 6 7.6979 -2.8329 -1.3220 15 6 8.9824 -3.0293 -0.4996 16 1 9.1778 -4.0689 -0.2367 17 6 10.2041 -2.3255 -1.0937 18 16 11.0113 -3.4231 -2.2914 19 6 12.4016 -2.4039 -2.8560 20 8 11.5280 -4.5497 -1.5964 21 8 10.1274 -3.6281 -3.3850 22 6 8.2944 -2.2298 0.6194 23 6 2.2445 -1.1601 0.0007 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 1.4937 2.8502 -1.0285 28 1 -0.0627 3.3596 0.7105 29 1 2.9936 3.2384 2.2802 30 1 4.0961 3.7348 0.1689 31 1 6.1847 -0.7110 0.0090 32 1 7.4046 -3.7150 -1.8911 33 1 7.6979 -1.9223 -1.9210 34 1 9.8884 -1.4105 -1.5948 35 1 10.9053 -2.0795 -0.2963 36 1 13.0383 -2.1553 -2.0069 37 1 12.9813 -2.9573 -3.5947 38 1 12.0208 -1.4867 -3.3054 39 1 8.4576 -1.1542 0.5512 40 1 8.4828 -2.6249 1.6176 41 1 1.8019 -2.1453 0.0013 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:50 Heat of formation + Delta-G solvation = -74.406891 kcal Electronic energy + Delta-G solvation = -25365.848831 eV Core-core repulsion = 21467.606225 eV Total energy + Delta-G solvation = -3898.242606 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.079 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.33616 -40.12322 -39.26840 -37.98754 -37.44680 -37.02146 -34.94880 -32.40038 -31.23790 -30.41669 -30.21068 -26.93211 -26.78854 -24.73852 -23.48117 -21.78589 -21.05235 -20.02458 -19.88714 -19.16301 -18.47401 -17.99778 -17.58386 -17.21487 -17.09889 -16.79070 -16.40039 -16.14206 -15.97160 -15.83872 -14.99373 -14.90183 -14.57108 -14.44441 -14.43386 -14.33863 -14.28465 -13.85279 -13.66591 -13.39360 -13.21616 -13.08775 -13.06383 -12.98848 -12.92605 -12.71288 -12.55004 -12.25417 -12.21556 -12.08777 -11.97389 -11.62806 -11.31074 -11.05544 -10.73289 -10.19028 -9.70454 -9.42485 -5.33369 -1.10937 -0.64794 0.25346 0.63578 0.99524 1.33616 1.43141 1.66294 1.78452 1.98099 2.15171 2.56064 2.87562 3.14158 3.17183 3.22143 3.42325 3.54624 3.59598 3.70851 3.71619 3.74139 3.89695 4.03399 4.10324 4.23045 4.24486 4.38166 4.48554 4.53856 4.55763 4.56556 4.59863 4.76020 4.85668 4.92353 4.93311 5.04685 5.04965 5.38110 5.40419 5.49181 6.31528 6.42081 7.06963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.084 4.084 3 C -0.196 4.196 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.670 3.330 7 S 0.178 5.822 8 C -0.262 4.262 9 C 0.595 3.405 10 O -0.521 6.521 11 N -0.718 5.718 12 C 0.123 3.877 13 H 0.124 0.876 14 C -0.153 4.153 15 C -0.102 4.102 16 H 0.112 0.888 17 C -0.601 4.601 18 S 2.419 3.581 19 C -0.659 4.659 20 O -0.938 6.938 21 O -0.933 6.933 22 C -0.131 4.131 23 C -0.044 4.044 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.384 0.616 29 H -0.241 1.241 30 H -0.239 1.239 31 H 0.398 0.602 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 10.329 0.543 10.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.315 4.315 4 C -0.145 4.145 5 O -0.343 6.343 6 Si 0.569 3.431 7 S 0.446 5.554 8 C -0.381 4.381 9 C 0.381 3.619 10 O -0.398 6.398 11 N -0.369 5.369 12 C 0.018 3.982 13 H 0.142 0.858 14 C -0.191 4.191 15 C -0.122 4.122 16 H 0.130 0.870 17 C -0.729 4.729 18 S 2.601 3.399 19 C -0.808 4.808 20 O -0.935 6.935 21 O -0.930 6.930 22 C -0.171 4.171 23 C -0.077 4.077 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.232 0.768 29 H -0.165 1.165 30 H -0.163 1.163 31 H 0.233 0.767 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.852 8.977 0.778 9.451 hybrid contribution -0.873 0.183 -0.095 0.897 sum 1.979 9.160 0.684 9.396 Atomic orbital electron populations 1.20531 0.88237 1.02675 1.02989 1.18750 0.98783 0.90239 1.01832 1.23215 0.97870 0.98831 1.11572 1.23972 0.92952 0.96215 1.01396 1.86575 1.32491 1.36279 1.78957 0.95015 0.79611 0.87194 0.81299 1.82914 1.03238 0.99306 1.69983 1.24601 0.98085 0.96540 1.18892 1.16956 0.81658 0.87399 0.75895 1.90863 1.81528 1.18063 1.49390 1.45825 1.05294 1.09879 1.75853 1.22567 0.85630 0.92941 0.97071 0.85806 1.23709 0.94034 1.04254 0.97147 1.22066 0.91461 1.00414 0.98209 0.86963 1.30304 1.09915 1.15619 1.17086 1.07928 0.77466 0.77607 0.76896 1.30301 1.20529 1.16780 1.13170 1.93623 1.79737 1.45711 1.74408 1.93625 1.63339 1.84397 1.51641 1.23387 0.93877 1.00935 0.98863 1.20787 0.90895 1.00236 0.95786 0.90743 0.90062 0.92099 0.89750 0.76757 1.16462 1.16330 0.76736 0.89397 0.88805 0.84807 0.84484 0.85333 0.85084 0.85337 0.88979 0.89649 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.07 8.70 36.01 0.31 0.24 16 2 C -0.08 -0.19 5.75 -106.45 -0.61 -0.80 16 3 C -0.20 -0.28 5.57 -35.86 -0.20 -0.48 16 4 C -0.03 0.05 2.75 36.00 0.10 0.14 16 5 O -0.54 0.96 9.81 -35.23 -0.35 0.62 16 6 Si 0.67 -1.50 31.30 -169.99 -5.32 -6.82 16 7 S 0.18 0.16 19.78 -107.50 -2.13 -1.97 16 8 C -0.26 -0.75 6.45 -36.79 -0.24 -0.99 16 9 C 0.59 2.25 7.78 -12.90 -0.10 2.15 16 10 O -0.52 -3.77 16.44 5.19 0.09 -3.68 16 11 N -0.72 -0.46 5.35 -54.36 -0.29 -0.75 16 12 C 0.12 0.00 4.24 -67.12 -0.28 -0.28 16 13 H 0.12 0.18 7.46 -51.93 -0.39 -0.21 16 14 C -0.15 0.06 7.43 -25.92 -0.19 -0.13 16 15 C -0.10 0.19 3.66 -89.81 -0.33 -0.14 16 16 H 0.11 -0.19 8.13 -51.93 -0.42 -0.61 16 17 C -0.60 2.55 5.64 37.16 0.21 2.76 16 18 S 2.42 -3.85 5.35 -107.50 -0.58 -4.43 16 19 C -0.66 2.93 10.62 101.05 1.07 4.01 16 20 O -0.94 -2.53 18.10 -57.83 -1.05 -3.58 16 21 O -0.93 -2.34 18.10 -57.83 -1.05 -3.39 16 22 C -0.13 0.33 7.39 -25.92 -0.19 0.14 16 23 C -0.04 -0.13 9.80 -40.43 -0.40 -0.53 16 24 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 25 H 0.08 0.03 6.41 -51.93 -0.33 -0.30 16 26 H 0.06 0.01 8.13 -51.93 -0.42 -0.41 16 27 H 0.08 -0.26 7.96 -51.93 -0.41 -0.67 16 28 H 0.38 -2.56 8.74 45.56 0.40 -2.17 16 29 H -0.24 -0.33 7.11 56.52 0.40 0.07 16 30 H -0.24 0.15 7.11 56.52 0.40 0.55 16 31 H 0.40 -0.65 7.84 -40.82 -0.32 -0.97 16 32 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.09 -0.13 7.90 -51.93 -0.41 -0.54 16 34 H 0.13 -0.85 7.84 -51.93 -0.41 -1.26 16 35 H 0.14 -0.89 8.14 -51.93 -0.42 -1.31 16 36 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 37 H 0.13 -0.54 8.14 -51.93 -0.42 -0.96 16 38 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 39 H 0.09 -0.37 8.08 -51.93 -0.42 -0.79 16 40 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 41 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 LS Contribution 367.77 15.07 5.54 5.54 Total: 0.00 -14.04 367.77 -11.69 -25.73 By element: Atomic # 1 Polarization: -7.65 SS G_CDS: -5.72 Total: -13.37 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.85 Total: 6.10 kcal Atomic # 7 Polarization: -0.46 SS G_CDS: -0.29 Total: -0.75 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -2.35 Total: -10.03 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -5.32 Total: -6.82 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -2.70 Total: -6.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -14.04 -11.69 -25.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.679 kcal (2) G-P(sol) polarization free energy of solvation -14.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds