Wall clock time and date at job start Tue Mar 9 2021 13:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42096 * 108.58077 * 2 1 4 4 O 1.42102 * 108.57899 * 228.97462 * 2 1 3 5 5 C 1.81402 * 101.92235 * 114.48905 * 2 1 3 6 6 C 1.53001 * 109.47157 * 180.02562 * 5 2 1 7 7 H 1.09001 * 112.84891 * 316.19352 * 6 5 2 8 8 C 1.53774 * 113.61498 * 87.50191 * 6 5 2 9 9 C 1.53779 * 87.08448 * 139.97799 * 8 6 5 10 10 H 1.09003 * 113.68962 * 89.12040 * 9 8 6 11 11 N 1.46500 * 113.61702 * 220.02005 * 9 8 6 12 12 C 1.34776 * 119.99410 * 252.49528 * 11 9 8 13 13 O 1.21637 * 120.00823 * 0.02562 * 12 11 9 14 14 C 1.47199 * 119.99718 * 180.02562 * 12 11 9 15 15 C 1.36006 * 123.45910 * 359.97313 * 14 12 11 16 16 S 1.70444 * 110.81520 * 179.74907 * 15 14 12 17 17 C 1.75500 * 92.44546 * 0.35800 * 16 15 14 18 18 C 1.50701 * 124.71246 * 179.90225 * 17 16 15 19 19 O 1.42896 * 109.47417 * 244.70108 * 18 17 16 20 20 Si 1.86301 * 109.47149 * 4.70124 * 18 17 16 21 21 C 1.32771 * 110.57678 * 359.64096 * 17 16 15 22 22 C 1.53781 * 113.61085 * 184.99695 * 6 5 2 23 23 H 1.09001 * 109.47011 * 305.51184 * 1 2 3 24 24 H 1.08999 * 109.46715 * 65.51519 * 1 2 3 25 25 H 1.09005 * 109.46988 * 185.51003 * 1 2 3 26 26 H 1.08998 * 109.46922 * 59.99698 * 5 2 1 27 27 H 1.09008 * 109.46635 * 299.99843 * 5 2 1 28 28 H 1.09005 * 113.61769 * 25.42726 * 8 6 5 29 29 H 1.09006 * 113.61835 * 254.53090 * 8 6 5 30 30 H 0.96996 * 120.00111 * 72.49730 * 11 9 8 31 31 H 1.08005 * 124.59313 * 0.06380 * 15 14 12 32 32 H 1.09002 * 109.47060 * 124.70135 * 18 17 16 33 33 H 0.96699 * 114.00604 * 179.97438 * 19 18 17 34 34 H 1.48498 * 110.00005 * 299.99971 * 20 18 17 35 35 H 1.48501 * 110.00049 * 61.31633 * 20 18 17 36 36 H 1.07993 * 123.45922 * 180.28688 * 21 17 16 37 37 H 1.09004 * 113.61299 * 105.47420 * 22 6 5 38 38 H 1.08997 * 113.69485 * 334.57596 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8185 1.7984 7 1 4.2207 -1.1761 0.9069 8 6 4.3236 0.4544 2.4004 9 6 5.2283 -0.4718 3.2301 10 1 6.1613 -0.7344 2.7314 11 7 5.4284 -0.0164 4.6081 12 6 6.6169 0.4973 4.9821 13 8 7.5234 0.5833 4.1756 14 6 6.8182 0.9544 6.3668 15 6 5.8547 0.8917 7.3246 16 16 6.4347 1.4988 8.8079 17 6 8.0125 1.8595 8.1293 18 6 9.1578 2.4686 8.8963 19 8 9.4598 3.7574 8.3580 20 14 8.6825 2.6406 10.6895 21 6 8.0588 1.5160 6.8476 22 6 4.1318 -1.5405 3.0876 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4259 -0.9353 25 1 -0.3633 -1.0230 0.0987 26 1 1.7610 -1.7370 1.6664 27 1 1.7611 -0.1170 2.4043 28 1 3.6255 1.0365 3.0021 29 1 4.8670 1.0609 1.6757 30 1 4.7055 -0.0847 5.2512 31 1 4.8586 0.5045 7.1681 32 1 10.0339 1.8255 8.8127 33 1 10.1887 4.2093 8.8046 34 1 7.4891 3.5151 10.8170 35 1 8.3967 1.3038 11.2696 36 1 8.9344 1.6431 6.2284 37 1 4.5202 -2.5447 2.9176 38 1 3.3820 -1.5048 3.8779 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:54 Heat of formation + Delta-G solvation = -70.936705 kcal Electronic energy + Delta-G solvation = -23328.236140 eV Core-core repulsion = 19585.681631 eV Total energy + Delta-G solvation = -3742.554509 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.063 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.37093 -39.87408 -38.55263 -37.98219 -37.14378 -37.01456 -34.94177 -32.15449 -31.12009 -30.34678 -26.98401 -26.91207 -26.12368 -23.66645 -21.84357 -21.14278 -20.28450 -19.92270 -18.76656 -18.47378 -18.12600 -17.88312 -17.41230 -17.14010 -16.61861 -16.39783 -16.16917 -15.94815 -15.62323 -15.05502 -14.81493 -14.40386 -14.33497 -14.28723 -13.97240 -13.85822 -13.80745 -13.69367 -13.61970 -13.30641 -13.07222 -12.98350 -12.70874 -12.67517 -12.35129 -12.20195 -12.08050 -12.07327 -11.60994 -11.29105 -10.87739 -10.50376 -10.13770 -9.99516 -9.53618 -5.32575 -1.10472 -0.39903 0.33719 0.68710 0.88741 1.11205 1.49550 1.66807 1.80280 2.06452 2.33296 2.56921 2.88095 3.18906 3.22594 3.25920 3.44402 3.57125 3.61802 3.71180 3.75469 3.80278 3.87588 3.96567 4.05739 4.23299 4.25230 4.31914 4.49883 4.56012 4.57292 4.59548 4.68520 4.78913 4.95597 4.99457 5.10135 5.19546 5.45072 6.41733 6.50838 7.18993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.419 3.581 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.600 4.600 6 C -0.102 4.102 7 H 0.112 0.888 8 C -0.153 4.153 9 C 0.123 3.877 10 H 0.123 0.877 11 N -0.716 5.716 12 C 0.580 3.420 13 O -0.528 6.528 14 C -0.154 4.154 15 C -0.204 4.204 16 S 0.175 5.825 17 C -0.197 4.197 18 C -0.035 4.035 19 O -0.542 6.542 20 Si 0.671 3.329 21 C -0.049 4.049 22 C -0.131 4.131 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.128 0.872 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.399 0.601 31 H 0.172 0.828 32 H 0.085 0.915 33 H 0.385 0.615 34 H -0.234 1.234 35 H -0.239 1.239 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -1.788 7.285 8.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.930 6.930 4 O -0.935 6.935 5 C -0.729 4.729 6 C -0.122 4.122 7 H 0.130 0.870 8 C -0.191 4.191 9 C 0.018 3.982 10 H 0.140 0.860 11 N -0.367 5.367 12 C 0.366 3.634 13 O -0.405 6.405 14 C -0.172 4.172 15 C -0.341 4.341 16 S 0.441 5.559 17 C -0.313 4.313 18 C -0.148 4.148 19 O -0.349 6.349 20 Si 0.570 3.430 21 C -0.078 4.078 22 C -0.170 4.170 23 H 0.146 0.854 24 H 0.149 0.851 25 H 0.147 0.853 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.234 0.766 31 H 0.189 0.811 32 H 0.103 0.897 33 H 0.233 0.767 34 H -0.157 1.157 35 H -0.162 1.162 36 H 0.176 0.824 37 H 0.102 0.898 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.785 -1.545 7.689 8.708 hybrid contribution -0.669 -0.773 -0.994 1.426 sum -4.454 -2.318 6.694 8.368 Atomic orbital electron populations 1.30303 1.26899 1.11579 1.12009 1.07943 0.78293 0.75997 0.77719 1.93626 1.78808 1.34211 1.86356 1.93623 1.79007 1.67090 1.53762 1.30302 1.04792 1.14153 1.23642 1.22071 0.90796 0.99374 0.99959 0.87015 1.23704 0.99248 0.96352 0.99838 1.22527 0.98909 0.94793 0.81956 0.85957 1.45787 1.14318 1.64154 1.12485 1.17618 0.82342 0.76946 0.86478 1.90827 1.41772 1.54792 1.53087 1.20245 0.94724 1.07750 0.94531 1.25784 1.03758 1.06023 0.98582 1.83178 1.04674 1.57393 1.10620 1.23421 0.98866 1.10637 0.98390 1.23999 0.96603 0.87234 1.06953 1.86525 1.57535 1.29233 1.61612 0.94686 0.86811 0.84114 0.77418 1.21050 0.97650 0.95496 0.93597 1.23377 0.97843 0.99016 0.96764 0.85353 0.85085 0.85333 0.84516 0.84835 0.88865 0.89490 0.76593 0.81109 0.89711 0.76672 1.15718 1.16244 0.82371 0.89762 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.90 10.62 101.05 1.07 3.98 16 2 S 2.42 -3.71 5.35 -107.50 -0.58 -4.29 16 3 O -0.93 -2.45 18.10 -57.83 -1.05 -3.49 16 4 O -0.94 -2.57 18.10 -57.83 -1.05 -3.62 16 5 C -0.60 2.58 5.64 37.16 0.21 2.79 16 6 C -0.10 0.20 3.66 -89.81 -0.33 -0.12 16 7 H 0.11 -0.19 8.13 -51.93 -0.42 -0.61 16 8 C -0.15 0.07 7.43 -25.92 -0.19 -0.12 16 9 C 0.12 -0.04 4.24 -67.12 -0.28 -0.32 16 10 H 0.12 0.17 7.46 -51.93 -0.39 -0.22 16 11 N -0.72 0.11 5.32 -54.16 -0.29 -0.18 16 12 C 0.58 1.96 7.79 -12.62 -0.10 1.86 16 13 O -0.53 -3.83 16.40 5.24 0.09 -3.74 16 14 C -0.15 -0.36 5.98 -104.63 -0.63 -0.99 16 15 C -0.20 0.02 10.38 29.93 0.31 0.33 16 16 S 0.18 0.13 20.20 -107.50 -2.17 -2.04 16 17 C -0.20 -0.39 5.69 -36.18 -0.21 -0.59 16 18 C -0.03 0.01 2.93 36.01 0.11 0.12 16 19 O -0.54 -0.05 12.86 -35.23 -0.45 -0.51 16 20 Si 0.67 -1.19 30.92 -169.99 -5.26 -6.44 16 21 C -0.05 -0.15 9.95 -39.02 -0.39 -0.54 16 22 C -0.13 0.37 7.39 -25.92 -0.19 0.18 16 23 H 0.13 -0.78 8.14 -51.92 -0.42 -1.21 16 24 H 0.13 -0.53 8.14 -51.92 -0.42 -0.95 16 25 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 26 H 0.14 -0.90 8.14 -51.93 -0.42 -1.32 16 27 H 0.13 -0.86 7.84 -51.92 -0.41 -1.27 16 28 H 0.09 -0.14 7.90 -51.93 -0.41 -0.55 16 29 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.40 -1.25 7.22 -40.82 -0.29 -1.55 16 31 H 0.17 -0.61 7.01 -52.48 -0.37 -0.97 16 32 H 0.09 -0.18 7.96 -51.93 -0.41 -0.59 16 33 H 0.39 -1.98 8.74 45.56 0.40 -1.58 16 34 H -0.23 -0.23 7.11 56.52 0.40 0.17 16 35 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 36 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.08 -0.25 8.14 -51.93 -0.42 -0.68 16 38 H 0.09 -0.41 8.08 -51.93 -0.42 -0.83 16 LS Contribution 350.41 15.07 5.28 5.28 Total: 0.00 -14.71 350.41 -10.97 -25.68 By element: Atomic # 1 Polarization: -8.33 SS G_CDS: -4.88 Total: -13.21 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -0.62 Total: 6.57 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -0.29 Total: -0.18 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -2.46 Total: -11.36 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.26 Total: -6.44 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.75 Total: -6.33 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -14.71 -10.97 -25.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.261 kcal (2) G-P(sol) polarization free energy of solvation -14.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds