Wall clock time and date at job start Tue Mar 9 2021 13:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42096 * 108.58077 * 2 1 4 4 O 1.42102 * 108.57899 * 228.97462 * 2 1 3 5 5 C 1.81402 * 101.92235 * 114.48905 * 2 1 3 6 6 C 1.53001 * 109.47157 * 180.02562 * 5 2 1 7 7 H 1.09001 * 112.84891 * 316.19352 * 6 5 2 8 8 C 1.53774 * 113.61498 * 87.50191 * 6 5 2 9 9 C 1.53779 * 87.08448 * 139.97799 * 8 6 5 10 10 H 1.09003 * 113.68962 * 89.12040 * 9 8 6 11 11 N 1.46500 * 113.61702 * 220.02005 * 9 8 6 12 12 C 1.34776 * 119.99410 * 252.49528 * 11 9 8 13 13 O 1.21637 * 120.00823 * 0.02562 * 12 11 9 14 14 C 1.47199 * 119.99718 * 180.02562 * 12 11 9 15 15 C 1.36006 * 123.45910 * 359.97313 * 14 12 11 16 16 S 1.70444 * 110.81520 * 179.74907 * 15 14 12 17 17 C 1.75500 * 92.44546 * 0.35800 * 16 15 14 18 18 C 1.50701 * 124.71246 * 179.90225 * 17 16 15 19 19 O 1.42896 * 109.47417 * 244.70108 * 18 17 16 20 20 Si 1.86301 * 109.47149 * 4.70124 * 18 17 16 21 21 C 1.32771 * 110.57678 * 359.64096 * 17 16 15 22 22 C 1.53781 * 113.61085 * 184.99695 * 6 5 2 23 23 H 1.09001 * 109.47011 * 305.51184 * 1 2 3 24 24 H 1.08999 * 109.46715 * 65.51519 * 1 2 3 25 25 H 1.09005 * 109.46988 * 185.51003 * 1 2 3 26 26 H 1.08998 * 109.46922 * 59.99698 * 5 2 1 27 27 H 1.09008 * 109.46635 * 299.99843 * 5 2 1 28 28 H 1.09005 * 113.61769 * 25.42726 * 8 6 5 29 29 H 1.09006 * 113.61835 * 254.53090 * 8 6 5 30 30 H 0.96996 * 120.00111 * 72.49730 * 11 9 8 31 31 H 1.08005 * 124.59313 * 0.06380 * 15 14 12 32 32 H 1.09002 * 109.47060 * 124.70135 * 18 17 16 33 33 H 0.96699 * 114.00604 * 179.97438 * 19 18 17 34 34 H 1.48498 * 110.00005 * 299.99971 * 20 18 17 35 35 H 1.48501 * 110.00049 * 61.31633 * 20 18 17 36 36 H 1.07993 * 123.45922 * 180.28688 * 21 17 16 37 37 H 1.09004 * 113.61299 * 105.47420 * 22 6 5 38 38 H 1.08997 * 113.69485 * 334.57596 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8185 1.7984 7 1 4.2207 -1.1761 0.9069 8 6 4.3236 0.4544 2.4004 9 6 5.2283 -0.4718 3.2301 10 1 6.1613 -0.7344 2.7314 11 7 5.4284 -0.0164 4.6081 12 6 6.6169 0.4973 4.9821 13 8 7.5234 0.5833 4.1756 14 6 6.8182 0.9544 6.3668 15 6 5.8547 0.8917 7.3246 16 16 6.4347 1.4988 8.8079 17 6 8.0125 1.8595 8.1293 18 6 9.1578 2.4686 8.8963 19 8 9.4598 3.7574 8.3580 20 14 8.6825 2.6406 10.6895 21 6 8.0588 1.5160 6.8476 22 6 4.1318 -1.5405 3.0876 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4259 -0.9353 25 1 -0.3633 -1.0230 0.0987 26 1 1.7610 -1.7370 1.6664 27 1 1.7611 -0.1170 2.4043 28 1 3.6255 1.0365 3.0021 29 1 4.8670 1.0609 1.6757 30 1 4.7055 -0.0847 5.2512 31 1 4.8586 0.5045 7.1681 32 1 10.0339 1.8255 8.8127 33 1 10.1887 4.2093 8.8046 34 1 7.4891 3.5151 10.8170 35 1 8.3967 1.3038 11.2696 36 1 8.9344 1.6431 6.2284 37 1 4.5202 -2.5447 2.9176 38 1 3.3820 -1.5048 3.8779 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:54 Heat of formation + Delta-G solvation = -80.489431 kcal Electronic energy + Delta-G solvation = -23328.650377 eV Core-core repulsion = 19585.681631 eV Total energy + Delta-G solvation = -3742.968746 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.063 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.45636 -39.89235 -38.61376 -37.98323 -37.20013 -37.01101 -35.05378 -32.15479 -30.91932 -30.08347 -27.01838 -26.78886 -26.18611 -23.61886 -21.96522 -21.09743 -20.32955 -19.81435 -18.77086 -18.43398 -18.26294 -17.78090 -17.32905 -17.01690 -16.62069 -16.35719 -16.25115 -16.01422 -15.69047 -15.06472 -14.68462 -14.34606 -14.06240 -14.00424 -13.93760 -13.91909 -13.77138 -13.63218 -13.49227 -13.24507 -13.07912 -13.01462 -12.69132 -12.66246 -12.41407 -12.11322 -12.03560 -11.95762 -11.53452 -11.19133 -11.02654 -10.46836 -10.23985 -10.04524 -9.61535 -5.19239 -0.91668 -0.46822 0.27211 0.61063 0.71968 1.18894 1.60025 1.87826 1.90666 2.02083 2.14866 2.76070 3.10273 3.31123 3.33639 3.41300 3.60826 3.67582 3.71267 3.80783 3.93022 4.04070 4.08721 4.14881 4.18281 4.32016 4.40451 4.51516 4.59370 4.67873 4.70869 4.78398 4.88955 4.91521 4.97343 5.00241 5.05470 5.13993 5.46777 6.39214 6.83165 7.06694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.405 3.595 3 O -0.989 6.989 4 O -0.995 6.995 5 C -0.579 4.579 6 C -0.110 4.110 7 H 0.097 0.903 8 C -0.159 4.159 9 C 0.110 3.890 10 H 0.094 0.906 11 N -0.697 5.697 12 C 0.576 3.424 13 O -0.582 6.582 14 C -0.180 4.180 15 C -0.181 4.181 16 S 0.188 5.812 17 C -0.211 4.211 18 C -0.052 4.052 19 O -0.565 6.565 20 Si 0.760 3.240 21 C -0.073 4.073 22 C -0.110 4.110 23 H 0.154 0.846 24 H 0.126 0.874 25 H 0.154 0.846 26 H 0.172 0.828 27 H 0.168 0.832 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.417 0.583 31 H 0.210 0.790 32 H 0.099 0.901 33 H 0.406 0.594 34 H -0.270 1.270 35 H -0.262 1.262 36 H 0.140 0.860 37 H 0.089 0.911 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -2.815 9.727 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.595 3.405 3 O -0.987 6.987 4 O -0.992 6.992 5 C -0.710 4.710 6 C -0.130 4.130 7 H 0.115 0.885 8 C -0.198 4.198 9 C 0.005 3.995 10 H 0.112 0.888 11 N -0.348 5.348 12 C 0.363 3.637 13 O -0.463 6.463 14 C -0.197 4.197 15 C -0.318 4.318 16 S 0.453 5.547 17 C -0.327 4.327 18 C -0.163 4.163 19 O -0.375 6.375 20 Si 0.662 3.338 21 C -0.102 4.102 22 C -0.149 4.149 23 H 0.172 0.828 24 H 0.145 0.855 25 H 0.172 0.828 26 H 0.190 0.810 27 H 0.186 0.814 28 H 0.128 0.872 29 H 0.075 0.925 30 H 0.255 0.745 31 H 0.227 0.773 32 H 0.117 0.883 33 H 0.257 0.743 34 H -0.195 1.195 35 H -0.187 1.187 36 H 0.158 0.842 37 H 0.108 0.892 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.453 -2.561 10.095 12.252 hybrid contribution 0.113 -0.438 -1.698 1.757 sum -6.341 -2.999 8.398 10.941 Atomic orbital electron populations 1.30128 1.22405 1.13857 1.13038 1.07847 0.79795 0.74445 0.78460 1.93557 1.80797 1.36816 1.87487 1.93551 1.81006 1.67706 1.56961 1.30135 1.03132 1.16455 1.21300 1.22080 0.92490 0.98347 1.00054 0.88480 1.23769 0.99526 0.96893 0.99576 1.22580 0.98741 0.96526 0.81661 0.88777 1.45650 1.13675 1.62571 1.12906 1.17888 0.82664 0.76612 0.86562 1.90795 1.43692 1.57325 1.54529 1.20174 0.95352 1.09611 0.94593 1.26154 1.04622 1.03756 0.97307 1.83162 1.03815 1.56961 1.10721 1.23801 1.00270 1.10327 0.98343 1.24354 0.96697 0.87361 1.07922 1.86471 1.58828 1.29553 1.62682 0.93563 0.84571 0.81052 0.74659 1.21073 0.97902 0.96988 0.94245 1.23347 0.96867 0.98005 0.96651 0.82776 0.85498 0.82757 0.80978 0.81413 0.87166 0.92540 0.74462 0.77274 0.88322 0.74269 1.19544 1.18736 0.84221 0.89223 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.97 10.62 113.37 1.20 8.18 16 2 S 2.41 -6.32 5.35 -56.49 -0.30 -6.62 16 3 O -0.99 -7.17 18.10 -127.37 -2.30 -9.48 16 4 O -0.99 -7.38 18.10 -127.37 -2.31 -9.69 16 5 C -0.58 6.35 5.64 71.98 0.41 6.75 16 6 C -0.11 0.47 3.66 -10.27 -0.04 0.43 16 7 H 0.10 -0.14 8.13 -2.39 -0.02 -0.16 16 8 C -0.16 0.00 7.43 31.12 0.23 0.23 16 9 C 0.11 0.03 4.24 45.52 0.19 0.22 16 10 H 0.09 0.57 7.46 -2.39 -0.02 0.55 16 11 N -0.70 0.24 5.32 -443.51 -2.36 -2.12 16 12 C 0.58 4.89 7.79 86.60 0.67 5.57 16 13 O -0.58 -10.60 16.40 -4.15 -0.07 -10.67 16 14 C -0.18 -1.02 5.98 -19.87 -0.12 -1.14 16 15 C -0.18 0.23 10.38 67.30 0.70 0.93 16 16 S 0.19 0.17 20.20 -56.49 -1.14 -0.97 16 17 C -0.21 -1.02 5.69 24.51 0.14 -0.88 16 18 C -0.05 0.02 2.93 71.24 0.21 0.22 16 19 O -0.56 -0.49 12.86 -148.98 -1.92 -2.41 16 20 Si 0.76 -2.97 30.92 68.60 2.12 -0.85 16 21 C -0.07 -0.61 9.95 22.67 0.23 -0.39 16 22 C -0.11 0.82 7.39 31.12 0.23 1.05 16 23 H 0.15 -2.41 8.14 -2.39 -0.02 -2.43 16 24 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 25 H 0.15 -2.41 8.14 -2.39 -0.02 -2.43 16 26 H 0.17 -3.00 8.14 -2.39 -0.02 -3.02 16 27 H 0.17 -2.90 7.84 -2.39 -0.02 -2.92 16 28 H 0.11 -0.42 7.90 -2.38 -0.02 -0.44 16 29 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.42 -3.51 7.22 -92.71 -0.67 -4.18 16 31 H 0.21 -2.16 7.01 -2.91 -0.02 -2.18 16 32 H 0.10 -0.37 7.96 -2.39 -0.02 -0.39 16 33 H 0.41 -4.12 8.74 -74.06 -0.65 -4.76 16 34 H -0.27 -0.54 7.11 99.48 0.71 0.17 16 35 H -0.26 0.03 7.11 99.48 0.71 0.74 16 36 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 38 H 0.12 -1.68 8.08 -2.39 -0.02 -1.70 16 Total: 0.00 -40.45 350.41 -4.40 -44.85 By element: Atomic # 1 Polarization: -23.04 SS G_CDS: -0.18 Total: -23.21 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 4.06 Total: 21.18 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -2.36 Total: -2.12 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -6.59 Total: -32.24 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.12 Total: -0.85 kcal Atomic # 16 Polarization: -6.15 SS G_CDS: -1.44 Total: -7.59 kcal Total: -40.45 -4.40 -44.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.644 kcal (2) G-P(sol) polarization free energy of solvation -40.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds