Wall clock time and date at job start Tue Mar 9 2021 13:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37929 * 120.07773 * 2 1 4 4 C 1.38381 * 120.14851 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.85583 * 180.02562 * 4 3 2 6 6 C 1.38336 * 120.29195 * 359.97438 * 4 3 2 7 7 C 1.50706 * 119.92765 * 180.02562 * 6 4 3 8 8 O 1.42896 * 109.46994 * 75.00380 * 7 6 4 9 9 Si 1.86303 * 109.46884 * 195.00360 * 7 6 4 10 10 C 1.37973 * 120.14538 * 359.97438 * 6 4 3 11 11 C 1.39558 * 119.85235 * 359.76836 * 10 6 4 12 12 C 1.47851 * 120.14646 * 180.25721 * 11 10 6 13 13 O 1.21550 * 119.99983 * 186.27509 * 12 11 10 14 14 N 1.34774 * 119.99770 * 6.26664 * 12 11 10 15 15 C 1.46505 * 119.99552 * 180.02562 * 14 12 11 16 16 H 1.08990 * 112.85346 * 23.80233 * 15 14 12 17 17 C 1.53782 * 113.61039 * 155.00270 * 15 14 12 18 18 C 1.53785 * 87.08089 * 139.97806 * 17 15 14 19 19 H 1.09002 * 113.61497 * 89.19725 * 18 17 15 20 20 C 1.52996 * 113.61664 * 220.01803 * 18 17 15 21 21 S 1.81403 * 109.47201 * 184.99830 * 20 18 17 22 22 C 1.81405 * 101.92003 * 179.97438 * 21 20 18 23 23 O 1.42099 * 108.58128 * 294.48616 * 21 20 18 24 24 O 1.42097 * 108.57540 * 65.51293 * 21 20 18 25 25 C 1.53783 * 113.60871 * 252.49613 * 15 14 12 26 26 H 1.09001 * 109.46699 * 96.60394 * 1 2 3 27 27 H 1.08997 * 109.47311 * 216.60664 * 1 2 3 28 28 H 1.09003 * 109.46704 * 336.60959 * 1 2 3 29 29 H 1.07997 * 119.92918 * 0.02562 * 3 2 1 30 30 H 1.08988 * 109.47169 * 89.99751 * 5 4 3 31 31 H 1.09001 * 109.46809 * 209.99802 * 5 4 3 32 32 H 1.09007 * 109.46700 * 329.99326 * 5 4 3 33 33 H 1.09001 * 109.46883 * 315.00265 * 7 6 4 34 34 H 0.96694 * 113.99919 * 59.99679 * 8 7 6 35 35 H 1.48500 * 110.00085 * 58.68398 * 9 7 6 36 36 H 1.48498 * 109.99738 * 180.02562 * 9 7 6 37 37 H 1.08005 * 120.07836 * 180.02562 * 10 6 4 38 38 H 0.96993 * 120.00368 * 0.02562 * 14 12 11 39 39 H 1.09002 * 113.61099 * 254.52171 * 17 15 14 40 40 H 1.08993 * 113.61574 * 25.43495 * 17 15 14 41 41 H 1.09001 * 109.47025 * 304.99680 * 20 18 17 42 42 H 1.08997 * 109.47213 * 64.99793 * 20 18 17 43 43 H 1.09003 * 109.46841 * 60.00062 * 22 21 20 44 44 H 1.09001 * 109.46935 * 180.02562 * 22 21 20 45 45 H 1.08997 * 109.47117 * 300.00240 * 22 21 20 46 46 H 1.08990 * 113.62026 * 334.56908 * 25 15 14 47 47 H 1.09002 * 113.61365 * 105.47316 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5821 1.1953 -0.0005 5 6 4.3307 2.5033 0.0001 6 6 4.2813 0.0016 -0.0005 7 6 5.7883 0.0131 -0.0005 8 8 6.2620 0.3653 1.3008 9 14 6.4221 -1.6788 -0.4553 10 6 3.6021 -1.1993 0.0005 11 6 2.2065 -1.2081 0.0065 12 6 1.4721 -2.4913 0.0134 13 8 0.2616 -2.4993 -0.0965 14 7 2.1449 -3.6520 0.1414 15 6 1.4171 -4.9235 0.1477 16 1 0.4505 -4.8605 -0.3520 17 6 2.2676 -6.1222 -0.3049 18 6 1.5812 -6.9295 0.8097 19 1 0.6596 -7.4168 0.4916 20 6 2.5270 -7.8746 1.5533 21 16 1.5791 -8.8722 2.7352 22 6 2.8749 -9.8967 3.4848 23 8 1.0491 -8.0102 3.7327 24 8 0.6975 -9.7178 2.0092 25 6 1.3548 -5.5907 1.5318 26 1 -0.3633 -0.1182 -1.0209 27 1 -0.3634 -0.8249 0.6128 28 1 -0.3633 0.9433 0.4080 29 1 1.6584 2.1289 0.0004 30 1 4.5115 2.8179 1.0277 31 1 5.2834 2.3768 -0.5142 32 1 3.7385 3.2610 -0.5132 33 1 6.1461 0.7426 -0.7272 34 1 5.9812 -0.2417 1.9991 35 1 5.9105 -2.0701 -1.7933 36 1 7.9071 -1.6809 -0.4582 37 1 4.1491 -2.1306 0.0009 38 1 3.1108 -3.6457 0.2293 39 1 2.0283 -6.4731 -1.3087 40 1 3.3371 -5.9829 -0.1477 41 1 3.0211 -8.5316 0.8374 42 1 3.2764 -7.2917 2.0887 43 1 3.6143 -9.2546 3.9634 44 1 2.4305 -10.5573 4.2293 45 1 3.3584 -10.4941 2.7119 46 1 2.1748 -5.3061 2.1910 47 1 0.3788 -5.5125 2.0107 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_9599494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:03 Heat of formation + Delta-G solvation = -89.981062 kcal Electronic energy + Delta-G solvation = -29455.278415 eV Core-core repulsion = 25311.670597 eV Total energy + Delta-G solvation = -4143.607818 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77431 -40.59449 -39.35411 -37.91507 -37.57043 -36.94222 -35.21716 -34.39998 -33.22548 -31.02372 -30.11362 -29.23088 -28.49115 -26.68053 -25.66232 -24.37847 -23.56397 -22.02570 -21.35646 -20.49746 -19.73426 -18.94885 -17.90271 -17.48516 -17.45023 -17.00892 -16.90294 -16.55512 -16.34108 -16.17594 -16.11404 -15.95722 -15.58024 -14.96896 -14.76235 -14.56633 -14.42944 -14.12620 -14.00662 -13.88604 -13.85162 -13.62847 -13.42547 -13.37637 -13.15406 -13.08327 -13.00324 -12.94824 -12.90040 -12.62635 -12.53008 -12.46166 -12.12891 -11.94482 -11.88857 -11.81881 -11.41970 -11.01464 -10.67116 -10.40622 -10.12503 -9.89334 -9.61003 -5.06713 -0.84484 -0.25652 0.16863 1.29652 1.64362 1.75060 1.97925 1.98998 2.10540 2.64671 2.83347 3.17862 3.42066 3.45383 3.49420 3.53829 3.63717 3.70713 3.75334 3.80314 3.82752 4.10274 4.14417 4.16773 4.19670 4.24315 4.39829 4.44772 4.50019 4.56352 4.60191 4.67221 4.74794 4.78025 4.79951 4.81806 4.86854 4.91261 5.00433 5.03382 5.04424 5.10322 5.11764 5.20372 5.28713 5.47954 5.50403 5.60161 5.79671 6.51026 6.79564 7.18960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.027 4.027 3 C -0.138 4.138 4 C -0.034 4.034 5 C -0.119 4.119 6 C -0.140 4.140 7 C -0.074 4.074 8 O -0.550 6.550 9 Si 0.771 3.229 10 C -0.062 4.062 11 C -0.158 4.158 12 C 0.555 3.445 13 O -0.566 6.566 14 N -0.702 5.702 15 C 0.112 3.888 16 H 0.094 0.906 17 C -0.114 4.114 18 C -0.112 4.112 19 H 0.093 0.907 20 C -0.578 4.578 21 S 2.405 3.595 22 C -0.643 4.643 23 O -0.988 6.988 24 O -0.998 6.998 25 C -0.157 4.157 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.395 0.605 35 H -0.282 1.282 36 H -0.295 1.295 37 H 0.157 0.843 38 H 0.416 0.584 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.171 0.829 42 H 0.172 0.828 43 H 0.155 0.845 44 H 0.124 0.876 45 H 0.152 0.848 46 H 0.115 0.885 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.377 -2.107 0.629 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.028 4.028 3 C -0.156 4.156 4 C -0.034 4.034 5 C -0.175 4.175 6 C -0.140 4.140 7 C -0.183 4.183 8 O -0.358 6.358 9 Si 0.676 3.324 10 C -0.080 4.080 11 C -0.161 4.161 12 C 0.344 3.656 13 O -0.447 6.447 14 N -0.353 5.353 15 C 0.007 3.993 16 H 0.112 0.888 17 C -0.153 4.153 18 C -0.132 4.132 19 H 0.112 0.888 20 C -0.709 4.709 21 S 2.595 3.405 22 C -0.795 4.795 23 O -0.985 6.985 24 O -0.995 6.995 25 C -0.195 4.195 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.160 0.840 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.245 0.755 35 H -0.209 1.209 36 H -0.223 1.223 37 H 0.174 0.826 38 H 0.255 0.745 39 H 0.104 0.896 40 H 0.145 0.855 41 H 0.188 0.812 42 H 0.190 0.810 43 H 0.174 0.826 44 H 0.143 0.857 45 H 0.171 0.829 46 H 0.133 0.867 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.311 -2.126 -0.133 8.580 hybrid contribution 0.433 0.677 -0.314 0.863 sum 8.744 -1.449 -0.447 8.875 Atomic orbital electron populations 1.21025 0.90348 1.03199 1.02967 1.20215 0.96869 0.92135 0.93609 1.21163 0.93727 0.97974 1.02703 1.20225 0.93430 0.96043 0.93706 1.20930 1.00031 0.93123 1.03455 1.20214 0.96672 0.92774 1.04368 1.25210 0.90954 1.12699 0.89436 1.86492 1.75888 1.56873 1.16525 0.94197 0.77466 0.77988 0.82770 1.21183 0.92187 0.97961 0.96629 1.19695 0.93905 0.92747 1.09733 1.18497 0.86820 0.84632 0.75635 1.90741 1.15362 1.87524 1.51028 1.45764 1.11367 1.04699 1.73507 1.22538 0.97417 0.81729 0.97656 0.88787 1.23390 1.01350 0.91895 0.98671 1.22083 0.98866 0.93989 0.98222 0.88828 1.30129 1.12207 1.13066 1.15531 1.07843 0.78916 0.76886 0.76885 1.30136 1.18463 1.16220 1.14718 1.93557 1.78241 1.67045 1.59654 1.93547 1.63858 1.68264 1.73857 1.23768 1.03718 0.94838 0.97211 0.91387 0.90298 0.90962 0.83998 0.89939 0.90976 0.90599 0.87343 0.75520 1.20868 1.22317 0.82595 0.74514 0.89580 0.85463 0.81159 0.80983 0.82633 0.85708 0.82922 0.86689 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 8.75 71.24 0.62 -0.03 16 2 C -0.03 -0.11 5.91 -19.61 -0.12 -0.23 16 3 C -0.14 -0.21 9.31 22.23 0.21 0.00 16 4 C -0.03 0.00 5.89 -19.80 -0.12 -0.12 16 5 C -0.12 0.25 9.53 71.24 0.68 0.93 16 6 C -0.14 0.30 5.25 -19.90 -0.10 0.20 16 7 C -0.07 0.29 2.04 71.24 0.15 0.44 16 8 O -0.55 2.03 12.80 -148.98 -1.91 0.13 16 9 Si 0.77 -5.19 29.91 68.60 2.05 -3.13 16 10 C -0.06 0.22 8.13 22.53 0.18 0.40 16 11 C -0.16 -0.34 5.87 -20.08 -0.12 -0.46 16 12 C 0.56 2.37 7.70 86.79 0.67 3.04 16 13 O -0.57 -6.89 12.93 -3.87 -0.05 -6.94 16 14 N -0.70 2.48 5.30 -442.90 -2.35 0.13 16 15 C 0.11 -0.30 4.24 45.52 0.19 -0.10 16 16 H 0.09 0.29 7.46 -2.39 -0.02 0.27 16 17 C -0.11 1.09 7.39 31.12 0.23 1.32 16 18 C -0.11 0.71 3.66 -10.26 -0.04 0.67 16 19 H 0.09 -0.28 8.13 -2.39 -0.02 -0.30 16 20 C -0.58 7.46 5.64 71.98 0.41 7.87 16 21 S 2.41 -10.10 5.35 -56.49 -0.30 -10.40 16 22 C -0.64 7.77 10.62 113.37 1.20 8.98 16 23 O -0.99 -5.25 18.10 -127.37 -2.31 -7.55 16 24 O -1.00 -6.29 18.10 -127.37 -2.30 -8.59 16 25 C -0.16 0.48 7.43 31.12 0.23 0.71 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.08 0.76 5.83 -2.39 -0.01 0.74 16 28 H 0.07 0.15 8.04 -2.39 -0.02 0.13 16 29 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 30 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.07 -0.16 6.22 -2.39 -0.01 -0.17 16 32 H 0.08 -0.27 8.08 -2.38 -0.02 -0.29 16 33 H 0.11 -0.29 6.48 -2.39 -0.02 -0.30 16 34 H 0.39 -4.61 8.70 -74.06 -0.64 -5.25 16 35 H -0.28 0.48 7.11 99.48 0.71 1.18 16 36 H -0.30 -0.30 7.11 99.48 0.71 0.41 16 37 H 0.16 -1.74 3.52 -2.91 -0.01 -1.75 16 38 H 0.42 -4.70 6.80 -92.71 -0.63 -5.34 16 39 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 40 H 0.13 -2.05 8.08 -2.39 -0.02 -2.07 16 41 H 0.17 -3.24 8.14 -2.39 -0.02 -3.26 16 42 H 0.17 -3.43 7.84 -2.39 -0.02 -3.45 16 43 H 0.16 -2.67 8.14 -2.39 -0.02 -2.69 16 44 H 0.12 -1.25 8.14 -2.39 -0.02 -1.27 16 45 H 0.15 -2.53 8.14 -2.39 -0.02 -2.55 16 46 H 0.11 -0.87 7.89 -2.39 -0.02 -0.89 16 47 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 Total: 0.00 -37.10 390.34 -3.12 -40.22 By element: Atomic # 1 Polarization: -27.24 SS G_CDS: -0.23 Total: -27.47 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: 4.28 Total: 23.61 kcal Atomic # 7 Polarization: 2.48 SS G_CDS: -2.35 Total: 0.13 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -6.57 Total: -22.96 kcal Atomic # 14 Polarization: -5.19 SS G_CDS: 2.05 Total: -3.13 kcal Atomic # 16 Polarization: -10.10 SS G_CDS: -0.30 Total: -10.40 kcal Total: -37.10 -3.12 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_9599494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.763 kcal (2) G-P(sol) polarization free energy of solvation -37.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds