Wall clock time and date at job start Tue Mar 9 2021 13:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42098 * 108.57892 * 2 1 4 4 O 1.42101 * 108.57916 * 228.97246 * 2 1 3 5 5 C 1.81403 * 101.91993 * 114.48734 * 2 1 3 6 6 C 1.53004 * 109.47079 * 180.02562 * 5 2 1 7 7 H 1.08995 * 112.84824 * 43.80354 * 6 5 2 8 8 C 1.53777 * 113.61224 * 175.00086 * 6 5 2 9 9 C 1.53777 * 87.08031 * 140.06405 * 8 6 5 10 10 H 1.08999 * 113.61777 * 89.20344 * 9 8 6 11 11 N 1.46505 * 113.61102 * 220.01765 * 9 8 6 12 12 C 1.34780 * 119.99553 * 205.00151 * 11 9 8 13 13 O 1.21280 * 120.00250 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99490 * 180.02562 * 12 11 9 15 15 N 1.46500 * 109.47020 * 179.97438 * 14 12 11 16 16 C 1.36835 * 125.06400 * 265.02579 * 15 14 12 17 17 C 1.34238 * 109.93623 * 179.97438 * 16 15 14 18 18 C 1.50703 * 126.49785 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47055 * 105.02362 * 18 17 16 20 20 Si 1.86304 * 109.46911 * 345.02254 * 18 17 16 21 21 C 1.46493 * 107.00178 * 0.23528 * 17 16 15 22 22 C 1.39586 * 134.03429 * 180.41689 * 21 17 16 23 23 C 1.36665 * 119.76384 * 179.61737 * 22 21 17 24 24 C 1.38793 * 120.52755 * 359.76922 * 23 22 21 25 25 C 1.37788 * 120.66431 * 359.97438 * 24 23 22 26 26 C 1.37692 * 125.06054 * 85.01980 * 15 14 12 27 27 C 1.53775 * 87.08146 * 334.56561 * 9 8 6 28 28 H 1.08996 * 109.47321 * 305.51842 * 1 2 3 29 29 H 1.09003 * 109.46846 * 65.51599 * 1 2 3 30 30 H 1.09002 * 109.47252 * 185.51073 * 1 2 3 31 31 H 1.08995 * 109.47307 * 59.99665 * 5 2 1 32 32 H 1.08999 * 109.46531 * 299.99873 * 5 2 1 33 33 H 1.09002 * 113.61696 * 25.50838 * 8 6 5 34 34 H 1.09005 * 113.61508 * 254.61246 * 8 6 5 35 35 H 0.97000 * 120.00376 * 25.00102 * 11 9 8 36 36 H 1.09001 * 109.47464 * 59.99800 * 14 12 11 37 37 H 1.09003 * 109.47151 * 299.98958 * 14 12 11 38 38 H 1.07998 * 125.02879 * 359.97438 * 16 15 14 39 39 H 1.09002 * 109.47152 * 225.02170 * 18 17 16 40 40 H 0.96703 * 114.00193 * 180.02562 * 19 18 17 41 41 H 1.48495 * 110.00011 * 60.00027 * 20 18 17 42 42 H 1.48509 * 109.99497 * 181.32041 * 20 18 17 43 43 H 1.07996 * 120.12226 * 359.36941 * 22 21 17 44 44 H 1.07998 * 119.73994 * 179.74512 * 23 22 21 45 45 H 1.08002 * 119.66821 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.10987 * 180.02562 * 25 24 23 47 47 H 1.08997 * 113.61917 * 139.98442 * 27 9 8 48 48 H 1.09007 * 113.61786 * 270.88674 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7054 -0.8184 1.7985 7 1 4.2199 0.0893 1.4835 8 6 4.1315 -1.3170 3.1894 9 6 5.2304 -2.1232 2.4772 10 1 6.1624 -1.5728 2.3491 11 7 5.4327 -3.4617 3.0376 12 6 6.6227 -4.0785 2.8962 13 8 7.5258 -3.5259 2.3048 14 6 6.8306 -5.4555 3.4722 15 7 8.1959 -5.9034 3.1863 16 6 8.5614 -6.6807 2.1211 17 6 9.8839 -6.9084 2.1531 18 6 10.6783 -7.7184 1.1611 19 8 11.4226 -6.8392 0.3156 20 14 9.5174 -8.7422 0.1242 21 6 10.4076 -6.2255 3.3386 22 6 11.6797 -6.0882 3.8965 23 6 11.8438 -5.3584 5.0403 24 6 10.7561 -4.7484 5.6495 25 6 9.4925 -4.8666 5.1128 26 6 9.3024 -5.6047 3.9494 27 6 4.3267 -2.1065 1.2331 28 1 -0.3634 0.5970 0.8364 29 1 -0.3633 0.4259 -0.9353 30 1 -0.3634 -1.0229 0.0987 31 1 1.7610 -1.7369 1.6665 32 1 1.7610 -0.1170 2.4042 33 1 3.3818 -1.9384 3.6792 34 1 4.5178 -0.5292 3.8362 35 1 4.7103 -3.9039 3.5104 36 1 6.1196 -6.1487 3.0226 37 1 6.6763 -5.4253 4.5508 38 1 7.8858 -7.0555 1.3665 39 1 11.3642 -8.3759 1.6953 40 1 11.9584 -7.2930 -0.3494 41 1 8.5770 -7.8574 -0.6091 42 1 10.2905 -9.5696 -0.8367 43 1 12.5307 -6.5602 3.4282 44 1 12.8276 -5.2559 5.4739 45 1 10.9015 -4.1753 6.5532 46 1 8.6525 -4.3879 5.5940 47 1 4.8704 -1.9562 0.3005 48 1 3.6303 -2.9439 1.1879 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:08 Heat of formation + Delta-G solvation = -30.644305 kcal Electronic energy + Delta-G solvation = -32039.000053 eV Core-core repulsion = 27576.087077 eV Total energy + Delta-G solvation = -4462.912976 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.133 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -42.43895 -41.24517 -39.61748 -38.01935 -37.93838 -37.55850 -37.05236 -35.02578 -34.08313 -31.67893 -31.11440 -30.45732 -30.12332 -28.86946 -26.98032 -25.82866 -24.26993 -23.47476 -22.45150 -21.71914 -20.97908 -20.38954 -19.95668 -18.53620 -18.35155 -18.25134 -17.88571 -17.62410 -17.40299 -17.17400 -16.64231 -16.42282 -16.29206 -16.25375 -15.69295 -15.55536 -15.06876 -14.80750 -14.65996 -14.59484 -14.43125 -14.35137 -14.31898 -13.98041 -13.87630 -13.71986 -13.57923 -13.41279 -13.27953 -13.10820 -13.02031 -12.76890 -12.61577 -12.41844 -12.36337 -12.27860 -12.11713 -11.95827 -11.68283 -11.56539 -11.34720 -11.02571 -10.37069 -10.23686 -10.21931 -8.97769 -8.48562 -4.91043 -1.14195 0.31714 0.83042 1.37077 1.39916 1.44002 1.63194 1.64432 1.78042 2.03283 2.11547 2.53046 2.83935 3.11958 3.13034 3.17993 3.36221 3.44857 3.49235 3.57805 3.68005 3.69885 3.72352 3.76041 3.84409 3.85177 3.91675 3.99352 4.11111 4.20204 4.34951 4.39014 4.42728 4.48148 4.50771 4.51953 4.53987 4.72002 4.73481 4.83443 4.88136 4.94444 4.99333 5.03380 5.29080 5.33267 5.68357 5.84297 5.89592 5.93700 6.17431 6.34162 6.40848 6.66183 7.02470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.418 3.582 3 O -0.938 6.938 4 O -0.933 6.933 5 C -0.600 4.600 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.130 4.130 9 C 0.122 3.878 10 H 0.120 0.880 11 N -0.719 5.719 12 C 0.490 3.510 13 O -0.510 6.510 14 C 0.092 3.908 15 N -0.466 5.466 16 C 0.072 3.928 17 C -0.151 4.151 18 C -0.037 4.037 19 O -0.534 6.534 20 Si 0.678 3.322 21 C -0.086 4.086 22 C -0.065 4.065 23 C -0.146 4.146 24 C -0.097 4.097 25 C -0.127 4.127 26 C 0.109 3.891 27 C -0.152 4.152 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.402 0.598 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.169 0.831 39 H 0.071 0.929 40 H 0.375 0.625 41 H -0.255 1.255 42 H -0.260 1.260 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.115 0.885 47 H 0.085 0.915 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 -4.549 6.270 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.935 6.935 4 O -0.930 6.930 5 C -0.729 4.729 6 C -0.122 4.122 7 H 0.129 0.871 8 C -0.169 4.169 9 C 0.018 3.982 10 H 0.138 0.862 11 N -0.372 5.372 12 C 0.274 3.726 13 O -0.383 6.383 14 C -0.034 4.034 15 N -0.150 5.150 16 C -0.053 4.053 17 C -0.158 4.158 18 C -0.147 4.147 19 O -0.341 6.341 20 Si 0.579 3.421 21 C -0.090 4.090 22 C -0.083 4.083 23 C -0.165 4.165 24 C -0.116 4.116 25 C -0.148 4.148 26 C 0.005 3.995 27 C -0.191 4.191 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.237 0.763 36 H 0.142 0.858 37 H 0.137 0.863 38 H 0.186 0.814 39 H 0.089 0.911 40 H 0.222 0.778 41 H -0.180 1.180 42 H -0.185 1.185 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.133 0.867 47 H 0.103 0.897 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.810 -3.498 4.776 9.800 hybrid contribution -0.250 0.066 0.217 0.337 sum -8.059 -3.432 4.994 10.083 Atomic orbital electron populations 1.30299 1.26831 1.11582 1.12049 1.07952 0.78319 0.75946 0.77774 1.93625 1.79013 1.34409 1.86426 1.93625 1.78838 1.66895 1.53687 1.30295 1.04702 1.14177 1.23679 1.22066 0.90849 1.00022 0.99303 0.87113 1.23371 0.97757 0.99874 0.95892 1.22514 0.98810 0.83090 0.93833 0.86221 1.45913 1.14284 1.18356 1.58618 1.21100 0.82785 0.88168 0.80573 1.90837 1.41502 1.65809 1.40121 1.21593 0.83701 0.94471 1.03651 1.43165 1.05262 1.43862 1.22682 1.21503 0.95899 0.96485 0.91373 1.19410 0.92046 1.07032 0.97338 1.24019 0.99641 0.96019 0.95044 1.86679 1.62799 1.35550 1.49077 0.95442 0.82278 0.81404 0.82960 1.18944 0.92902 1.01185 0.95961 1.20268 0.95088 0.97917 0.95059 1.20658 0.98935 1.00114 0.96787 1.20814 0.91687 0.99416 0.99732 1.19942 0.97992 1.01735 0.95096 1.18152 0.85893 1.00523 0.94948 1.23691 0.99188 0.96908 0.99308 0.85312 0.85079 0.85332 0.84791 0.84487 0.88878 0.89814 0.76300 0.85849 0.86329 0.81388 0.91053 0.77783 1.17972 1.18516 0.86101 0.85952 0.85740 0.86737 0.89656 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.19 10.62 101.05 1.07 4.26 16 2 S 2.42 -4.74 5.35 -107.50 -0.58 -5.32 16 3 O -0.94 -2.32 18.10 -57.83 -1.05 -3.37 16 4 O -0.93 -2.03 18.10 -57.83 -1.05 -3.08 16 5 C -0.60 2.97 5.64 37.16 0.21 3.18 16 6 C -0.10 0.27 3.65 -89.81 -0.33 -0.06 16 7 H 0.11 -0.22 8.13 -51.93 -0.42 -0.64 16 8 C -0.13 0.49 7.39 -25.92 -0.19 0.30 16 9 C 0.12 -0.18 4.24 -67.12 -0.28 -0.46 16 10 H 0.12 0.11 7.46 -51.93 -0.39 -0.27 16 11 N -0.72 1.92 5.36 -53.02 -0.28 1.63 16 12 C 0.49 0.27 7.90 -10.98 -0.09 0.19 16 13 O -0.51 -3.20 16.02 5.56 0.09 -3.11 16 14 C 0.09 -0.20 6.48 -5.19 -0.03 -0.23 16 15 N -0.47 -0.94 2.27 -115.71 -0.26 -1.20 16 16 C 0.07 0.16 9.89 -16.73 -0.17 0.00 16 17 C -0.15 -0.57 5.61 -102.71 -0.58 -1.14 16 18 C -0.04 -0.07 3.05 36.01 0.11 0.04 16 19 O -0.53 -1.96 12.86 -35.23 -0.45 -2.41 16 20 Si 0.68 -0.04 30.79 -169.99 -5.23 -5.28 16 21 C -0.09 -0.43 6.35 -105.14 -0.67 -1.09 16 22 C -0.06 -0.26 10.05 -39.65 -0.40 -0.66 16 23 C -0.15 -0.42 9.97 -39.94 -0.40 -0.82 16 24 C -0.10 -0.24 10.01 -39.54 -0.40 -0.64 16 25 C -0.13 -0.37 10.00 -39.43 -0.39 -0.76 16 26 C 0.11 0.44 6.80 -83.99 -0.57 -0.13 16 27 C -0.15 0.22 7.43 -25.92 -0.19 0.02 16 28 H 0.13 -0.84 8.14 -51.93 -0.42 -1.26 16 29 H 0.13 -0.58 8.14 -51.92 -0.42 -1.00 16 30 H 0.13 -0.85 8.14 -51.92 -0.42 -1.28 16 31 H 0.13 -0.98 7.85 -51.93 -0.41 -1.38 16 32 H 0.14 -0.98 8.14 -51.92 -0.42 -1.40 16 33 H 0.09 -0.53 8.08 -51.93 -0.42 -0.95 16 34 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 35 H 0.40 -2.52 8.73 -40.82 -0.36 -2.87 16 36 H 0.12 -0.70 8.12 -51.93 -0.42 -1.12 16 37 H 0.12 -0.56 8.14 -51.93 -0.42 -0.98 16 38 H 0.17 -0.06 6.30 -52.49 -0.33 -0.39 16 39 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 40 H 0.37 -0.28 8.74 45.56 0.40 0.12 16 41 H -0.26 -0.71 7.04 56.52 0.40 -0.32 16 42 H -0.26 -0.49 7.11 56.52 0.40 -0.09 16 43 H 0.12 0.34 8.06 -52.49 -0.42 -0.09 16 44 H 0.12 0.10 8.06 -52.49 -0.42 -0.32 16 45 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 46 H 0.11 0.09 8.06 -52.49 -0.42 -0.34 16 47 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 48 H 0.09 -0.27 7.90 -51.93 -0.41 -0.68 16 LS Contribution 416.58 15.07 6.28 6.28 Total: 0.00 -18.16 416.58 -12.85 -31.01 By element: Atomic # 1 Polarization: -10.12 SS G_CDS: -7.02 Total: -17.14 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -3.29 Total: 1.99 kcal Atomic # 7 Polarization: 0.98 SS G_CDS: -0.55 Total: 0.44 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -2.46 Total: -11.97 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: -5.23 Total: -5.28 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -0.58 Total: -5.32 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -18.16 -12.85 -31.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.365 kcal (2) G-P(sol) polarization free energy of solvation -18.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds