Wall clock time and date at job start Tue Mar 9 2021 13:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42098 * 108.57892 * 2 1 4 4 O 1.42101 * 108.57916 * 228.97246 * 2 1 3 5 5 C 1.81403 * 101.91993 * 114.48734 * 2 1 3 6 6 C 1.53004 * 109.47079 * 180.02562 * 5 2 1 7 7 H 1.08995 * 112.84824 * 43.80354 * 6 5 2 8 8 C 1.53777 * 113.61224 * 175.00086 * 6 5 2 9 9 C 1.53777 * 87.08031 * 140.06405 * 8 6 5 10 10 H 1.08999 * 113.61777 * 89.20344 * 9 8 6 11 11 N 1.46505 * 113.61102 * 220.01765 * 9 8 6 12 12 C 1.34780 * 119.99553 * 205.00151 * 11 9 8 13 13 O 1.21280 * 120.00250 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99490 * 180.02562 * 12 11 9 15 15 N 1.46500 * 109.47020 * 179.97438 * 14 12 11 16 16 C 1.36835 * 125.06400 * 265.02579 * 15 14 12 17 17 C 1.34238 * 109.93623 * 179.97438 * 16 15 14 18 18 C 1.50703 * 126.49785 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47055 * 105.02362 * 18 17 16 20 20 Si 1.86304 * 109.46911 * 345.02254 * 18 17 16 21 21 C 1.46493 * 107.00178 * 0.23528 * 17 16 15 22 22 C 1.39586 * 134.03429 * 180.41689 * 21 17 16 23 23 C 1.36665 * 119.76384 * 179.61737 * 22 21 17 24 24 C 1.38793 * 120.52755 * 359.76922 * 23 22 21 25 25 C 1.37788 * 120.66431 * 359.97438 * 24 23 22 26 26 C 1.37692 * 125.06054 * 85.01980 * 15 14 12 27 27 C 1.53775 * 87.08146 * 334.56561 * 9 8 6 28 28 H 1.08996 * 109.47321 * 305.51842 * 1 2 3 29 29 H 1.09003 * 109.46846 * 65.51599 * 1 2 3 30 30 H 1.09002 * 109.47252 * 185.51073 * 1 2 3 31 31 H 1.08995 * 109.47307 * 59.99665 * 5 2 1 32 32 H 1.08999 * 109.46531 * 299.99873 * 5 2 1 33 33 H 1.09002 * 113.61696 * 25.50838 * 8 6 5 34 34 H 1.09005 * 113.61508 * 254.61246 * 8 6 5 35 35 H 0.97000 * 120.00376 * 25.00102 * 11 9 8 36 36 H 1.09001 * 109.47464 * 59.99800 * 14 12 11 37 37 H 1.09003 * 109.47151 * 299.98958 * 14 12 11 38 38 H 1.07998 * 125.02879 * 359.97438 * 16 15 14 39 39 H 1.09002 * 109.47152 * 225.02170 * 18 17 16 40 40 H 0.96703 * 114.00193 * 180.02562 * 19 18 17 41 41 H 1.48495 * 110.00011 * 60.00027 * 20 18 17 42 42 H 1.48509 * 109.99497 * 181.32041 * 20 18 17 43 43 H 1.07996 * 120.12226 * 359.36941 * 22 21 17 44 44 H 1.07998 * 119.73994 * 179.74512 * 23 22 21 45 45 H 1.08002 * 119.66821 * 179.97438 * 24 23 22 46 46 H 1.07996 * 120.10987 * 180.02562 * 25 24 23 47 47 H 1.08997 * 113.61917 * 139.98442 * 27 9 8 48 48 H 1.09007 * 113.61786 * 270.88674 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7054 -0.8184 1.7985 7 1 4.2199 0.0893 1.4835 8 6 4.1315 -1.3170 3.1894 9 6 5.2304 -2.1232 2.4772 10 1 6.1624 -1.5728 2.3491 11 7 5.4327 -3.4617 3.0376 12 6 6.6227 -4.0785 2.8962 13 8 7.5258 -3.5259 2.3048 14 6 6.8306 -5.4555 3.4722 15 7 8.1959 -5.9034 3.1863 16 6 8.5614 -6.6807 2.1211 17 6 9.8839 -6.9084 2.1531 18 6 10.6783 -7.7184 1.1611 19 8 11.4226 -6.8392 0.3156 20 14 9.5174 -8.7422 0.1242 21 6 10.4076 -6.2255 3.3386 22 6 11.6797 -6.0882 3.8965 23 6 11.8438 -5.3584 5.0403 24 6 10.7561 -4.7484 5.6495 25 6 9.4925 -4.8666 5.1128 26 6 9.3024 -5.6047 3.9494 27 6 4.3267 -2.1065 1.2331 28 1 -0.3634 0.5970 0.8364 29 1 -0.3633 0.4259 -0.9353 30 1 -0.3634 -1.0229 0.0987 31 1 1.7610 -1.7369 1.6665 32 1 1.7610 -0.1170 2.4042 33 1 3.3818 -1.9384 3.6792 34 1 4.5178 -0.5292 3.8362 35 1 4.7103 -3.9039 3.5104 36 1 6.1196 -6.1487 3.0226 37 1 6.6763 -5.4253 4.5508 38 1 7.8858 -7.0555 1.3665 39 1 11.3642 -8.3759 1.6953 40 1 11.9584 -7.2930 -0.3494 41 1 8.5770 -7.8574 -0.6091 42 1 10.2905 -9.5696 -0.8367 43 1 12.5307 -6.5602 3.4282 44 1 12.8276 -5.2559 5.4739 45 1 10.9015 -4.1753 6.5532 46 1 8.6525 -4.3879 5.5940 47 1 4.8704 -1.9562 0.3005 48 1 3.6303 -2.9439 1.1879 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:07 Heat of formation + Delta-G solvation = -41.286147 kcal Electronic energy + Delta-G solvation = -32039.461518 eV Core-core repulsion = 27576.087077 eV Total energy + Delta-G solvation = -4463.374440 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.133 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.53444 -41.18183 -39.59044 -38.09698 -37.98937 -37.71441 -37.01504 -35.00315 -34.15078 -31.64428 -30.98294 -30.29367 -30.14901 -28.86301 -26.77876 -25.89962 -24.22088 -23.57968 -22.55524 -21.70222 -20.82879 -20.50495 -19.81281 -18.55295 -18.43705 -18.27404 -17.80605 -17.66095 -17.28719 -17.01610 -16.56328 -16.44019 -16.36315 -16.18145 -15.80486 -15.59559 -15.01384 -14.87700 -14.75925 -14.62147 -14.44986 -14.13150 -14.05712 -13.91619 -13.64339 -13.54041 -13.48323 -13.37452 -13.18128 -13.07434 -13.02083 -12.75855 -12.62769 -12.57310 -12.52382 -12.11041 -12.05894 -11.96072 -11.72406 -11.53736 -11.18845 -11.02947 -10.54280 -10.35904 -10.14634 -9.16024 -8.63564 -4.92414 -0.91773 0.13560 0.63807 1.31209 1.38318 1.42617 1.60751 1.72643 1.90834 1.97390 2.19283 2.76159 2.93505 3.10124 3.33918 3.41413 3.55098 3.56260 3.62602 3.69164 3.75427 3.79594 3.84930 4.02165 4.03507 4.08889 4.14684 4.16443 4.22852 4.27785 4.31835 4.39971 4.51329 4.57008 4.69561 4.70799 4.72108 4.78719 4.79728 4.90114 4.91897 4.97760 5.00808 5.14055 5.15685 5.49189 5.51025 5.65839 5.73006 5.75216 6.17210 6.24004 6.48431 6.66697 7.15087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.402 3.598 3 O -0.998 6.998 4 O -0.990 6.990 5 C -0.576 4.576 6 C -0.114 4.114 7 H 0.090 0.910 8 C -0.108 4.108 9 C 0.112 3.888 10 H 0.083 0.917 11 N -0.697 5.697 12 C 0.487 3.513 13 O -0.579 6.579 14 C 0.088 3.912 15 N -0.467 5.467 16 C 0.072 3.928 17 C -0.182 4.182 18 C -0.058 4.058 19 O -0.566 6.566 20 Si 0.783 3.217 21 C -0.119 4.119 22 C -0.088 4.088 23 C -0.153 4.153 24 C -0.107 4.107 25 C -0.133 4.133 26 C 0.091 3.909 27 C -0.157 4.157 28 H 0.154 0.846 29 H 0.125 0.875 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.425 0.575 36 H 0.166 0.834 37 H 0.151 0.849 38 H 0.192 0.808 39 H 0.080 0.920 40 H 0.389 0.611 41 H -0.293 1.293 42 H -0.285 1.285 43 H 0.121 0.879 44 H 0.138 0.862 45 H 0.147 0.853 46 H 0.135 0.865 47 H 0.049 0.951 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -5.929 8.752 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.592 3.408 3 O -0.995 6.995 4 O -0.987 6.987 5 C -0.708 4.708 6 C -0.134 4.134 7 H 0.108 0.892 8 C -0.147 4.147 9 C 0.006 3.994 10 H 0.101 0.899 11 N -0.350 5.350 12 C 0.273 3.727 13 O -0.457 6.457 14 C -0.036 4.036 15 N -0.149 5.149 16 C -0.053 4.053 17 C -0.189 4.189 18 C -0.166 4.166 19 O -0.375 6.375 20 Si 0.687 3.313 21 C -0.123 4.123 22 C -0.106 4.106 23 C -0.172 4.172 24 C -0.126 4.126 25 C -0.154 4.154 26 C -0.015 4.015 27 C -0.196 4.196 28 H 0.172 0.828 29 H 0.144 0.856 30 H 0.174 0.826 31 H 0.190 0.810 32 H 0.189 0.811 33 H 0.147 0.853 34 H 0.103 0.897 35 H 0.264 0.736 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.209 0.791 39 H 0.098 0.902 40 H 0.239 0.761 41 H -0.220 1.220 42 H -0.212 1.212 43 H 0.139 0.861 44 H 0.156 0.844 45 H 0.165 0.835 46 H 0.153 0.847 47 H 0.068 0.932 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.347 -4.868 7.274 14.330 hybrid contribution 0.810 0.538 -0.532 1.108 sum -10.537 -4.330 6.742 13.237 Atomic orbital electron populations 1.30120 1.22297 1.13933 1.13001 1.07911 0.79849 0.74373 0.78673 1.93549 1.81061 1.37260 1.87651 1.93555 1.80816 1.67411 1.56915 1.30112 1.03053 1.16541 1.21061 1.22086 0.92498 0.98591 1.00178 0.89184 1.23334 0.96953 0.99510 0.94866 1.22423 0.98093 0.83799 0.95041 0.89899 1.45735 1.14071 1.17673 1.57522 1.21652 0.82600 0.88950 0.79540 1.90822 1.43854 1.67611 1.43453 1.22042 0.82402 0.93336 1.05815 1.43406 1.06370 1.43161 1.21976 1.21911 0.95933 0.95875 0.91594 1.19764 0.93052 1.08307 0.97819 1.24487 1.00572 0.96012 0.95530 1.86629 1.63631 1.37295 1.49945 0.94281 0.78984 0.78352 0.79710 1.19369 0.93709 1.02193 0.97011 1.20449 0.95222 0.98986 0.95952 1.20932 1.00043 0.99755 0.96503 1.21153 0.91509 0.99438 1.00491 1.20259 0.98887 1.01353 0.94864 1.18430 0.86614 1.00819 0.95587 1.23754 0.99529 0.98602 0.97679 0.82780 0.85599 0.82603 0.81044 0.81052 0.85291 0.89703 0.73622 0.81667 0.83132 0.79114 0.90201 0.76113 1.22014 1.21207 0.86143 0.84378 0.83488 0.84686 0.93236 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.50 10.62 113.37 1.20 8.71 16 2 S 2.40 -8.03 5.35 -56.49 -0.30 -8.33 16 3 O -1.00 -7.23 18.10 -127.37 -2.30 -9.53 16 4 O -0.99 -6.35 18.10 -127.37 -2.31 -8.65 16 5 C -0.58 7.08 5.64 71.98 0.41 7.48 16 6 C -0.11 0.62 3.65 -10.27 -0.04 0.58 16 7 H 0.09 -0.13 8.13 -2.39 -0.02 -0.15 16 8 C -0.11 1.03 7.39 31.12 0.23 1.26 16 9 C 0.11 -0.28 4.24 45.51 0.19 -0.09 16 10 H 0.08 0.43 7.46 -2.39 -0.02 0.42 16 11 N -0.70 4.59 5.36 -440.04 -2.36 2.23 16 12 C 0.49 0.48 7.90 87.66 0.69 1.17 16 13 O -0.58 -8.58 16.02 -3.03 -0.05 -8.63 16 14 C 0.09 -0.54 6.48 85.63 0.56 0.01 16 15 N -0.47 -1.87 2.27 -519.98 -1.18 -3.05 16 16 C 0.07 0.37 9.89 83.00 0.82 1.19 16 17 C -0.18 -1.67 5.61 -18.62 -0.10 -1.77 16 18 C -0.06 -0.31 3.05 71.24 0.22 -0.09 16 19 O -0.57 -5.42 12.86 -148.98 -1.92 -7.34 16 20 Si 0.78 0.06 30.79 68.60 2.11 2.17 16 21 C -0.12 -1.43 6.35 -20.20 -0.13 -1.55 16 22 C -0.09 -0.92 10.05 22.23 0.22 -0.70 16 23 C -0.15 -1.11 9.97 22.03 0.22 -0.89 16 24 C -0.11 -0.58 10.01 22.30 0.22 -0.36 16 25 C -0.13 -0.81 10.00 22.37 0.22 -0.59 16 26 C 0.09 0.82 6.80 39.03 0.27 1.09 16 27 C -0.16 0.34 7.43 31.12 0.23 0.57 16 28 H 0.15 -2.53 8.14 -2.39 -0.02 -2.54 16 29 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 30 H 0.16 -2.62 8.14 -2.39 -0.02 -2.64 16 31 H 0.17 -3.31 7.85 -2.39 -0.02 -3.33 16 32 H 0.17 -3.18 8.14 -2.39 -0.02 -3.20 16 33 H 0.13 -2.12 8.08 -2.39 -0.02 -2.14 16 34 H 0.08 -0.76 8.14 -2.38 -0.02 -0.78 16 35 H 0.42 -6.75 8.73 -92.71 -0.81 -7.56 16 36 H 0.17 -2.44 8.12 -2.39 -0.02 -2.46 16 37 H 0.15 -1.89 8.14 -2.39 -0.02 -1.91 16 38 H 0.19 -0.19 6.30 -2.91 -0.02 -0.21 16 39 H 0.08 0.19 7.96 -2.39 -0.02 0.17 16 40 H 0.39 0.19 8.74 -74.05 -0.65 -0.45 16 41 H -0.29 -1.82 7.04 99.48 0.70 -1.12 16 42 H -0.29 -1.13 7.11 99.48 0.71 -0.42 16 43 H 0.12 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.14 0.37 8.06 -2.91 -0.02 0.34 16 45 H 0.15 -0.01 8.06 -2.91 -0.02 -0.04 16 46 H 0.14 0.10 8.06 -2.91 -0.02 0.07 16 47 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.12 -0.83 7.90 -2.38 -0.02 -0.85 16 Total: 0.00 -50.60 416.58 -3.29 -53.89 By element: Atomic # 1 Polarization: -28.35 SS G_CDS: -0.43 Total: -28.78 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 5.44 Total: 16.02 kcal Atomic # 7 Polarization: 2.72 SS G_CDS: -3.54 Total: -0.82 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -6.57 Total: -34.15 kcal Atomic # 14 Polarization: 0.06 SS G_CDS: 2.11 Total: 2.17 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -0.30 Total: -8.33 kcal Total: -50.60 -3.29 -53.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.605 kcal (2) G-P(sol) polarization free energy of solvation -50.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds