Wall clock time and date at job start Tue Mar 9 2021 13:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46919 * 263.75049 * 3 2 1 5 5 H 1.08997 * 112.84823 * 43.80479 * 4 3 2 6 6 C 1.53779 * 113.68847 * 272.53484 * 4 3 2 7 7 C 1.53779 * 87.08180 * 220.01069 * 6 4 3 8 8 H 1.09004 * 113.69416 * 139.99061 * 7 6 4 9 9 N 1.46496 * 113.61318 * 270.88353 * 7 6 4 10 10 C 1.34772 * 120.00214 * 252.49669 * 9 7 6 11 11 O 1.21281 * 119.99940 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00069 * 180.02562 * 10 9 7 13 13 C 1.50706 * 109.47001 * 179.97438 * 12 10 9 14 14 C 1.38233 * 120.00109 * 269.72485 * 13 12 10 15 15 C 1.38238 * 119.99754 * 179.76611 * 14 13 12 16 16 C 1.38234 * 120.00038 * 0.48818 * 15 14 13 17 17 C 1.50696 * 120.00185 * 179.77054 * 16 15 14 18 18 O 1.42901 * 109.47603 * 120.02260 * 17 16 15 19 19 Si 1.86296 * 109.46954 * 0.02562 * 17 16 15 20 20 C 1.38238 * 120.00047 * 359.78460 * 16 15 14 21 21 C 1.38235 * 120.00108 * 359.96171 * 20 16 15 22 22 C 1.53778 * 113.61206 * 175.00251 * 4 3 2 23 23 H 1.08995 * 109.47090 * 143.74952 * 3 2 1 24 24 H 1.09001 * 109.46655 * 23.75101 * 3 2 1 25 25 H 1.09000 * 113.61690 * 105.45710 * 6 4 3 26 26 H 1.09005 * 113.61322 * 334.55476 * 6 4 3 27 27 H 0.97000 * 119.99972 * 72.49670 * 9 7 6 28 28 H 1.09000 * 109.46978 * 60.00374 * 12 10 9 29 29 H 1.09000 * 109.46976 * 299.99619 * 12 10 9 30 30 H 1.08004 * 119.99934 * 0.02562 * 14 13 12 31 31 H 1.07999 * 119.99931 * 180.25459 * 15 14 13 32 32 H 1.09000 * 109.47002 * 240.02155 * 17 16 15 33 33 H 0.96696 * 114.00171 * 180.02562 * 18 17 16 34 34 H 1.48507 * 110.00186 * 298.68287 * 19 17 16 35 35 H 1.48503 * 110.00288 * 60.00549 * 19 17 16 36 36 H 1.08000 * 120.00559 * 179.97438 * 20 16 15 37 37 H 1.07999 * 120.00165 * 179.97438 * 21 20 16 38 38 H 1.09000 * 113.61509 * 25.51300 * 22 4 3 39 39 H 1.09000 * 113.61050 * 254.61366 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 0.1579 1.4340 5 1 2.5758 -0.4637 2.1465 6 6 3.2645 1.6221 1.8805 7 6 4.5660 1.1963 2.5802 8 1 5.3727 1.9231 2.4848 9 7 4.3694 0.7423 3.9591 10 6 4.7692 1.5169 4.9870 11 8 5.2922 2.5895 4.7705 12 6 4.5676 1.0496 6.4055 13 6 5.0974 2.0909 7.3575 14 6 6.4133 2.0376 7.7776 15 6 6.9005 2.9956 8.6470 16 6 6.0692 4.0009 9.1043 17 6 6.5989 5.0421 10.0562 18 8 6.4723 6.3368 9.4646 19 14 8.3937 4.6974 10.4174 20 6 4.7517 4.0508 8.6886 21 6 4.2658 3.0960 7.8151 22 6 4.6467 0.0489 1.5595 23 1 2.9710 0.8295 -0.6076 24 1 2.9717 -0.9398 -0.4139 25 1 2.4852 1.9488 2.5690 26 1 3.4198 2.3169 1.0550 27 1 3.9515 -0.1157 4.1324 28 1 5.1022 0.1122 6.5587 29 1 3.5043 0.8959 6.5897 30 1 7.0618 1.2500 7.4232 31 1 7.9297 2.9563 8.9720 32 1 6.0286 5.0095 10.9844 33 1 6.7949 7.0575 10.0228 34 1 8.5357 3.3671 11.0620 35 1 9.1822 4.7392 9.1597 36 1 4.1020 4.8360 9.0461 37 1 3.2365 3.1348 7.4907 38 1 5.1798 0.3135 0.6464 39 1 4.9833 -0.8947 1.9890 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534922_12335836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:41 Heat of formation + Delta-G solvation = 8.702380 kcal Electronic energy + Delta-G solvation = -21371.993989 eV Core-core repulsion = 18053.838349 eV Total energy + Delta-G solvation = -3318.155640 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 287.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53818 -40.60244 -39.44979 -37.59606 -37.39171 -34.66560 -34.09968 -31.93745 -31.41735 -29.66640 -26.91233 -25.90175 -24.40393 -23.82264 -22.36878 -21.38455 -20.43872 -18.88129 -18.36492 -18.05553 -17.63733 -17.08975 -16.82921 -16.33472 -16.20570 -16.10525 -15.68341 -15.14739 -14.99942 -14.79177 -14.58307 -14.33965 -14.05326 -13.79520 -13.70773 -13.64636 -13.37512 -13.27528 -13.10821 -12.95971 -12.56562 -12.19312 -12.14104 -11.95682 -11.75915 -11.67566 -11.38097 -10.92528 -10.31434 -10.12400 -9.83954 -9.55522 -4.94672 0.25690 0.48636 1.31579 1.60766 1.66204 1.78094 1.82687 2.01456 2.03251 2.76120 2.86641 3.26939 3.41338 3.42522 3.58802 3.63721 3.68714 3.80225 3.87520 3.94611 4.02945 4.05868 4.19063 4.31809 4.34933 4.40848 4.44477 4.48546 4.54297 4.55793 4.70235 4.72432 4.86981 4.87858 4.97732 5.02374 5.08611 5.38886 5.49196 5.57252 5.59360 6.01131 6.40533 6.59932 6.66222 7.19934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.202 3.798 3 C -0.017 4.017 4 C -0.110 4.110 5 H 0.097 0.903 6 C -0.150 4.150 7 C 0.119 3.881 8 H 0.106 0.894 9 N -0.717 5.717 10 C 0.516 3.484 11 O -0.523 6.523 12 C -0.103 4.103 13 C -0.064 4.064 14 C -0.098 4.098 15 C -0.122 4.122 16 C -0.074 4.074 17 C -0.072 4.072 18 O -0.545 6.545 19 Si 0.682 3.318 20 C -0.087 4.087 21 C -0.102 4.102 22 C -0.137 4.137 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.401 0.599 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.382 0.618 34 H -0.256 1.256 35 H -0.251 1.251 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.103 0.897 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 -2.628 2.160 4.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.115 4.115 3 C -0.057 4.057 4 C -0.130 4.130 5 H 0.115 0.885 6 C -0.189 4.189 7 C 0.013 3.987 8 H 0.124 0.876 9 N -0.369 5.369 10 C 0.302 3.698 11 O -0.397 6.397 12 C -0.143 4.143 13 C -0.065 4.065 14 C -0.116 4.116 15 C -0.140 4.140 16 C -0.074 4.074 17 C -0.182 4.182 18 O -0.351 6.351 19 Si 0.584 3.416 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.175 4.175 23 H 0.130 0.870 24 H 0.131 0.869 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.236 0.764 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.229 0.771 34 H -0.181 1.181 35 H -0.175 1.175 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.483 -2.721 1.364 3.928 hybrid contribution -0.395 -0.680 -0.170 0.804 sum 2.087 -3.400 1.195 4.165 Atomic orbital electron populations 1.81295 1.13154 1.08644 1.08088 1.29227 0.95345 0.93406 0.93568 1.19344 0.81672 1.05946 0.98777 1.22623 0.96718 0.98489 0.95132 0.88463 1.23586 0.98397 0.95884 1.01017 1.21800 0.98734 0.97591 0.80547 0.87572 1.45694 1.63279 1.22742 1.05234 1.20587 0.77766 0.84650 0.86751 1.90777 1.41746 1.21731 1.85466 1.20688 1.04031 0.99018 0.90519 1.19239 0.94012 0.96253 0.96976 1.20846 0.94839 0.98851 0.97085 1.20794 0.98358 0.96002 0.98797 1.19343 0.94417 0.95132 0.98527 1.24690 1.11646 0.85195 0.96704 1.86510 1.87289 1.14724 1.46557 0.95457 0.76806 0.85165 0.84185 1.20944 0.94820 0.97905 0.96830 1.21028 0.99773 0.94108 0.97091 1.23381 0.94997 0.99232 0.99866 0.87035 0.86914 0.90853 0.88453 0.76408 0.87621 0.87586 0.85804 0.86536 0.90800 0.77088 1.18058 1.17523 0.85414 0.85777 0.87859 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -1.82 18.54 42.16 0.78 -1.04 16 2 C 0.20 0.00 15.42 -20.76 -0.32 -0.32 16 3 C -0.02 0.08 5.54 -29.52 -0.16 -0.08 16 4 C -0.11 0.51 3.49 -89.81 -0.31 0.19 16 5 H 0.10 -0.44 8.12 -51.93 -0.42 -0.86 16 6 C -0.15 0.40 7.43 -25.92 -0.19 0.21 16 7 C 0.12 -0.26 4.32 -67.12 -0.29 -0.55 16 8 H 0.11 0.00 7.46 -51.93 -0.39 -0.38 16 9 N -0.72 1.55 5.26 -53.02 -0.28 1.27 16 10 C 0.52 0.49 7.82 -10.99 -0.09 0.40 16 11 O -0.52 -3.06 15.63 5.56 0.09 -2.98 16 12 C -0.10 0.13 5.83 -29.03 -0.17 -0.04 16 13 C -0.06 -0.13 4.37 -104.62 -0.46 -0.59 16 14 C -0.10 -0.26 9.70 -39.58 -0.38 -0.65 16 15 C -0.12 -0.44 8.67 -39.58 -0.34 -0.79 16 16 C -0.07 -0.26 5.42 -104.63 -0.57 -0.83 16 17 C -0.07 -0.07 2.81 36.00 0.10 0.03 16 18 O -0.54 -0.77 12.74 -35.23 -0.45 -1.22 16 19 Si 0.68 -0.10 29.79 -169.99 -5.06 -5.17 16 20 C -0.09 -0.28 9.61 -39.58 -0.38 -0.66 16 21 C -0.10 -0.25 9.70 -39.58 -0.38 -0.63 16 22 C -0.14 0.69 7.39 -25.92 -0.19 0.49 16 23 H 0.11 -0.71 7.85 -51.93 -0.41 -1.11 16 24 H 0.11 -0.76 8.14 -51.93 -0.42 -1.18 16 25 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.10 -0.32 7.90 -51.93 -0.41 -0.73 16 27 H 0.40 -1.99 8.70 -40.82 -0.36 -2.34 16 28 H 0.11 -0.38 8.08 -51.93 -0.42 -0.80 16 29 H 0.11 -0.36 8.09 -51.93 -0.42 -0.78 16 30 H 0.12 0.08 8.06 -52.48 -0.42 -0.34 16 31 H 0.12 0.35 4.88 -52.49 -0.26 0.09 16 32 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 33 H 0.38 -1.47 8.74 45.56 0.40 -1.07 16 34 H -0.26 -0.50 7.11 56.52 0.40 -0.10 16 35 H -0.25 -0.85 7.11 56.52 0.40 -0.44 16 36 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 37 H 0.12 0.07 8.06 -52.49 -0.42 -0.35 16 38 H 0.10 -0.62 8.10 -51.93 -0.42 -1.04 16 39 H 0.08 -0.43 8.14 -51.93 -0.42 -0.85 16 LS Contribution 338.21 15.07 5.10 5.10 Total: 0.00 -12.06 338.21 -9.22 -21.28 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -5.25 Total: -13.44 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.14 Total: -3.80 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: 0.50 Total: 0.24 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.36 Total: -4.20 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: -5.06 Total: -5.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -12.06 -9.22 -21.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12335836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.980 kcal (2) G-P(sol) polarization free energy of solvation -12.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds