Wall clock time and date at job start Tue Mar 9 2021 13:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34852 * 125.90041 * 2 1 4 4 C 1.40935 * 107.46562 * 179.90841 * 3 2 1 5 5 C 1.50706 * 126.26408 * 180.16318 * 4 3 2 6 6 O 1.42897 * 109.47260 * 255.22926 * 5 4 3 7 7 Si 1.86292 * 109.47296 * 15.23307 * 5 4 3 8 8 C 1.34854 * 107.47207 * 0.36018 * 4 3 2 9 9 C 1.50692 * 125.90205 * 179.76299 * 8 4 3 10 10 N 1.36562 * 125.89703 * 180.31297 * 2 1 3 11 11 C 1.40227 * 125.67286 * 359.97438 * 10 2 1 12 12 C 1.38899 * 119.99627 * 269.70398 * 11 10 2 13 13 C 1.50699 * 119.88425 * 359.97438 * 12 11 10 14 14 C 1.38265 * 120.22828 * 179.71927 * 12 11 10 15 15 C 1.37975 * 120.21569 * 0.55318 * 14 12 11 16 16 C 1.39618 * 119.98741 * 359.72041 * 15 14 12 17 17 C 1.47856 * 120.11319 * 179.97438 * 16 15 14 18 18 O 1.21556 * 119.99760 * 180.02562 * 17 16 15 19 19 N 1.34772 * 120.00053 * 0.02562 * 17 16 15 20 20 C 1.46506 * 120.00048 * 179.97438 * 19 17 16 21 21 H 1.09004 * 112.84281 * 23.80779 * 20 19 17 22 22 C 1.53779 * 113.61654 * 155.00193 * 20 19 17 23 23 C 1.53777 * 87.07893 * 89.11744 * 22 20 19 24 24 H 1.09000 * 113.61614 * 270.88032 * 23 22 20 25 25 C 1.53001 * 113.61224 * 140.06562 * 23 22 20 26 26 C 1.47203 * 109.47167 * 174.99967 * 25 23 22 27 27 N 9.92188 * 99.02399 * 220.74947 * 12 1 2 28 28 C 1.53777 * 87.08216 * 25.43630 * 23 22 20 29 29 C 1.38593 * 119.99193 * 89.97214 * 11 10 2 30 30 H 1.09002 * 109.47152 * 269.68684 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.68785 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.68766 * 1 2 3 33 33 H 1.07998 * 126.26469 * 0.02620 * 3 2 1 34 34 H 1.09005 * 109.46614 * 135.23527 * 5 4 3 35 35 H 0.96701 * 113.99950 * 59.99906 * 6 5 4 36 36 H 1.48500 * 110.00092 * 58.67827 * 7 5 4 37 37 H 1.48499 * 110.00431 * 179.97438 * 7 5 4 38 38 H 1.09001 * 109.47263 * 270.02048 * 9 8 4 39 39 H 1.08997 * 109.47641 * 30.02358 * 9 8 4 40 40 H 1.09003 * 109.47057 * 150.02467 * 9 8 4 41 41 H 1.09001 * 109.47155 * 90.00151 * 13 12 11 42 42 H 1.08999 * 109.46954 * 209.99570 * 13 12 11 43 43 H 1.09001 * 109.47325 * 329.99885 * 13 12 11 44 44 H 1.08002 * 119.89323 * 180.29719 * 14 12 11 45 45 H 1.07999 * 120.00961 * 179.74849 * 15 14 12 46 46 H 0.96998 * 120.00109 * 0.02562 * 19 17 16 47 47 H 1.08997 * 113.61685 * 203.66814 * 22 20 19 48 48 H 1.09008 * 113.61052 * 334.57020 * 22 20 19 49 49 H 1.08996 * 109.47447 * 295.00187 * 25 23 22 50 50 H 1.09003 * 109.47324 * 55.00301 * 25 23 22 51 51 H 1.09009 * 113.61501 * 220.02042 * 28 23 22 52 52 H 1.08995 * 113.61904 * 89.11369 * 28 23 22 53 53 H 1.07997 * 120.10565 * 0.03014 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2978 1.0924 0.0000 4 6 3.6348 0.6467 0.0021 5 6 4.8648 1.5176 0.0064 6 8 5.4549 1.5148 -1.2950 7 14 4.3913 3.2587 0.4699 8 6 3.6122 -0.7017 -0.0047 9 6 4.8178 -1.6057 -0.0103 10 7 2.3077 -1.1062 -0.0060 11 6 1.8644 -2.4366 -0.0128 12 6 1.6512 -3.1036 1.1868 13 6 1.8977 -2.3953 2.4939 14 6 1.2086 -4.4135 1.1857 15 6 0.9866 -5.0705 -0.0071 16 6 1.2034 -4.4105 -1.2181 17 6 0.9670 -5.1120 -2.4980 18 8 1.1569 -4.5356 -3.5512 19 7 0.5409 -6.3906 -2.4969 20 6 0.3061 -7.0856 -3.7650 21 1 0.8734 -6.6595 -4.5925 22 6 0.4242 -8.6153 -3.6603 23 6 -1.0740 -8.6286 -3.3143 24 1 -1.2767 -8.5334 -2.2476 25 6 -1.8430 -9.7803 -3.9647 26 6 -3.2332 -9.7774 -3.4806 27 7 -4.3041 -9.7755 -3.1100 28 6 -1.1830 -7.3011 -4.0830 29 6 1.6444 -3.0874 -1.2165 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 -0.8872 -0.5187 32 1 -0.3633 0.8928 -0.5090 33 1 1.9670 2.1204 0.0004 34 1 5.5813 1.1307 0.7310 35 1 4.8724 1.8471 -1.9917 36 1 3.7475 3.2708 1.8081 37 1 5.5956 4.1275 0.4783 38 1 5.1078 -1.8181 -1.0393 39 1 5.6427 -1.1145 0.5056 40 1 4.5749 -2.5385 0.4986 41 1 0.9823 -1.8993 2.8166 42 1 2.2032 -3.1204 3.2481 43 1 2.6858 -1.6538 2.3624 44 1 1.0400 -4.9254 2.1217 45 1 0.6447 -6.0949 -0.0040 46 1 0.3890 -6.8505 -1.6565 47 1 0.6579 -9.1011 -4.6077 48 1 1.0641 -8.9489 -2.8432 49 1 -1.8351 -9.6568 -5.0476 50 1 -1.3694 -10.7267 -3.7035 51 1 -1.8407 -6.5737 -3.6071 52 1 -1.3886 -7.4276 -5.1458 53 1 1.8143 -2.5718 -2.1501 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_12335842.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:46 Heat of formation + Delta-G solvation = 60.876828 kcal Electronic energy + Delta-G solvation = -34408.413440 eV Core-core repulsion = 30020.265446 eV Total energy + Delta-G solvation = -4388.147995 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.94932 -41.59519 -40.30305 -39.22946 -37.67258 -37.52884 -35.13708 -34.17176 -33.73452 -33.61138 -31.15103 -30.59871 -30.16159 -28.60044 -27.14607 -26.60757 -24.96876 -24.59691 -23.67655 -23.56821 -22.05150 -20.94996 -20.37092 -20.28253 -18.87334 -18.38210 -17.67352 -17.49491 -17.25644 -16.85814 -16.54733 -16.28908 -16.08301 -15.94170 -15.65290 -15.41666 -15.33024 -15.02254 -14.93807 -14.81067 -14.61603 -14.43936 -14.28225 -14.14320 -14.04339 -13.97026 -13.72393 -13.51618 -13.40713 -13.35129 -13.20950 -13.14633 -13.09490 -13.01121 -12.78260 -12.74518 -12.40609 -12.35057 -12.14070 -11.86896 -11.78594 -11.45576 -11.21419 -11.10586 -10.36694 -10.23277 -10.17682 -9.88953 -9.69868 -8.82096 -4.92539 -0.46688 -0.04789 1.06616 1.44325 1.57738 1.66396 1.77294 1.84499 1.85912 1.90970 2.00167 2.06441 2.52854 3.10080 3.42307 3.53861 3.59587 3.66921 3.69473 3.71687 3.73132 3.85995 3.91961 3.98683 3.99233 4.09474 4.14212 4.31031 4.35575 4.40912 4.43018 4.49168 4.52748 4.57311 4.63857 4.66290 4.69112 4.70698 4.74038 4.77243 4.86290 4.91573 4.93413 4.97494 4.99345 5.00635 5.03207 5.05831 5.12103 5.12893 5.19466 5.23743 5.26520 5.37824 5.52056 5.63782 6.00788 6.16352 6.39858 6.49099 6.69160 6.85330 7.07579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.017 3.983 3 C -0.195 4.195 4 C -0.205 4.205 5 C -0.038 4.038 6 O -0.561 6.561 7 Si 0.785 3.215 8 C 0.035 3.965 9 C -0.078 4.078 10 N -0.401 5.401 11 C 0.089 3.911 12 C -0.044 4.044 13 C -0.120 4.120 14 C -0.112 4.112 15 C -0.055 4.055 16 C -0.144 4.144 17 C 0.560 3.440 18 O -0.579 6.579 19 N -0.692 5.692 20 C 0.103 3.897 21 H 0.085 0.915 22 C -0.115 4.115 23 C -0.100 4.100 24 H 0.100 0.900 25 C -0.016 4.016 26 C 0.234 3.766 27 N -0.518 5.518 28 C -0.155 4.155 29 C -0.055 4.055 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.096 0.904 35 H 0.391 0.609 36 H -0.291 1.291 37 H -0.302 1.302 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.172 0.828 45 H 0.170 0.830 46 H 0.416 0.584 47 H 0.124 0.876 48 H 0.093 0.907 49 H 0.135 0.865 50 H 0.145 0.855 51 H 0.051 0.949 52 H 0.107 0.893 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.328 -6.174 2.049 6.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.218 4.218 4 C -0.212 4.212 5 C -0.149 4.149 6 O -0.369 6.369 7 Si 0.692 3.308 8 C -0.075 4.075 9 C -0.136 4.136 10 N -0.076 5.076 11 C 0.000 4.000 12 C -0.045 4.045 13 C -0.177 4.177 14 C -0.130 4.130 15 C -0.074 4.074 16 C -0.148 4.148 17 C 0.349 3.651 18 O -0.460 6.460 19 N -0.344 5.344 20 C -0.003 4.003 21 H 0.104 0.896 22 C -0.153 4.153 23 C -0.119 4.119 24 H 0.118 0.882 25 C -0.055 4.055 26 C -0.082 4.082 27 N -0.196 5.196 28 C -0.194 4.194 29 C -0.075 4.075 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.240 0.760 36 H -0.218 1.218 37 H -0.230 1.230 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.190 0.810 45 H 0.187 0.813 46 H 0.254 0.746 47 H 0.142 0.858 48 H 0.112 0.888 49 H 0.153 0.847 50 H 0.163 0.837 51 H 0.070 0.930 52 H 0.125 0.875 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.665 -5.708 2.738 6.366 hybrid contribution 0.420 -0.289 0.177 0.539 sum -0.245 -5.997 2.915 6.672 Atomic orbital electron populations 1.20356 0.86784 1.03585 1.03204 1.20780 0.94343 0.84940 1.09052 1.20804 0.91433 0.98432 1.11177 1.19753 0.95358 0.92697 1.13381 1.24468 0.93368 1.08882 0.88164 1.86420 1.44246 1.88880 1.17311 0.93534 0.80559 0.74194 0.82555 1.20468 0.84387 0.94391 1.08217 1.20251 0.93314 0.97447 1.02561 1.41343 1.05336 1.03089 1.57872 1.17422 1.05186 0.84077 0.93324 1.20513 0.94708 0.94953 0.94331 1.20890 1.02698 1.00825 0.93240 1.21341 0.98867 0.92793 0.99995 1.21752 0.94479 1.00973 0.90148 1.19732 1.06723 0.94442 0.93854 1.18382 0.76155 0.82249 0.88359 1.90795 1.53550 1.67342 1.34279 1.45455 1.66801 1.11796 1.10319 1.22020 0.97322 0.94628 0.86293 0.89636 1.23345 0.94708 0.91944 1.05327 1.22549 0.95944 0.92980 1.00449 0.88222 1.19727 0.80160 1.02639 1.03016 1.30010 0.95543 0.90992 0.91692 1.81206 1.15460 1.11193 1.11776 1.23655 0.95844 0.97583 1.02288 1.21191 0.95129 0.93995 0.97149 0.90225 0.92751 0.88530 0.81923 0.88658 0.75994 1.21841 1.22986 0.91474 0.89926 0.91776 0.89795 0.88611 0.92660 0.81043 0.81287 0.74568 0.85814 0.88802 0.84722 0.83704 0.93019 0.87490 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.02 10.09 71.24 0.72 0.74 16 2 C 0.02 0.07 6.86 41.05 0.28 0.35 16 3 C -0.19 -0.68 9.27 22.15 0.21 -0.48 16 4 C -0.21 -1.11 5.35 -19.98 -0.11 -1.21 16 5 C -0.04 -0.16 2.60 71.24 0.19 0.03 16 6 O -0.56 -2.79 12.88 -148.98 -1.92 -4.71 16 7 Si 0.78 1.43 30.82 68.60 2.11 3.55 16 8 C 0.04 0.22 6.30 41.04 0.26 0.48 16 9 C -0.08 -0.33 9.88 71.23 0.70 0.37 16 10 N -0.40 -2.05 1.86 -320.37 -0.60 -2.65 16 11 C 0.09 0.28 4.49 38.04 0.17 0.45 16 12 C -0.04 0.07 5.90 -19.70 -0.12 -0.05 16 13 C -0.12 0.36 9.76 71.24 0.69 1.05 16 14 C -0.11 0.75 9.67 22.21 0.21 0.96 16 15 C -0.06 0.37 9.54 22.54 0.21 0.59 16 16 C -0.14 -0.11 5.87 -20.10 -0.12 -0.23 16 17 C 0.56 1.93 7.77 86.79 0.67 2.61 16 18 O -0.58 -7.61 15.94 -3.89 -0.06 -7.68 16 19 N -0.69 3.43 5.21 -442.89 -2.31 1.12 16 20 C 0.10 -0.61 4.32 45.51 0.20 -0.42 16 21 H 0.09 -0.06 7.46 -2.39 -0.02 -0.08 16 22 C -0.12 1.62 7.39 31.12 0.23 1.85 16 23 C -0.10 1.27 3.49 -10.27 -0.04 1.23 16 24 H 0.10 -1.27 8.12 -2.39 -0.02 -1.29 16 25 C -0.02 0.22 5.54 28.79 0.16 0.38 16 26 C 0.23 -0.45 15.41 89.47 1.38 0.93 16 27 N -0.52 -4.13 18.52 19.97 0.37 -3.76 16 28 C -0.16 1.12 7.43 31.12 0.23 1.35 16 29 C -0.05 -0.28 9.51 22.65 0.22 -0.06 16 30 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.05 0.08 7.83 -2.39 -0.02 0.06 16 32 H 0.10 -0.29 8.14 -2.38 -0.02 -0.31 16 33 H 0.16 -0.23 6.59 -2.91 -0.02 -0.25 16 34 H 0.10 0.49 7.50 -2.38 -0.02 0.47 16 35 H 0.39 -0.81 8.70 -74.06 -0.64 -1.45 16 36 H -0.29 -2.07 7.11 99.48 0.71 -1.36 16 37 H -0.30 -2.58 7.11 99.48 0.71 -1.87 16 38 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.08 0.27 7.50 -2.39 -0.02 0.25 16 40 H 0.06 0.18 7.83 -2.39 -0.02 0.16 16 41 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.10 -0.67 8.08 -2.39 -0.02 -0.69 16 43 H 0.05 0.08 6.97 -2.39 -0.02 0.07 16 44 H 0.17 -2.20 8.06 -2.91 -0.02 -2.22 16 45 H 0.17 -2.48 6.40 -2.91 -0.02 -2.50 16 46 H 0.42 -4.89 6.73 -92.71 -0.62 -5.52 16 47 H 0.12 -2.11 8.10 -2.39 -0.02 -2.12 16 48 H 0.09 -1.47 8.14 -2.38 -0.02 -1.49 16 49 H 0.14 -2.34 7.85 -2.39 -0.02 -2.35 16 50 H 0.15 -2.76 8.14 -2.39 -0.02 -2.78 16 51 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 52 H 0.11 -0.95 7.90 -2.39 -0.02 -0.97 16 53 H 0.11 1.17 7.65 -2.91 -0.02 1.15 16 Total: 0.00 -32.27 442.17 3.68 -28.59 By element: Atomic # 1 Polarization: -25.12 SS G_CDS: -0.28 Total: -25.39 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.36 Total: 10.93 kcal Atomic # 7 Polarization: -2.75 SS G_CDS: -2.53 Total: -5.29 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.98 Total: -12.39 kcal Atomic # 14 Polarization: 1.43 SS G_CDS: 2.11 Total: 3.55 kcal Total: -32.27 3.68 -28.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12335842.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.463 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds