Wall clock time and date at job start Tue Mar 9 2021 13:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47111 * 96.70758 * 3 2 1 5 5 H 1.08994 * 112.84801 * 43.80318 * 4 3 2 6 6 C 1.53779 * 113.68826 * 272.52891 * 4 3 2 7 7 C 1.53783 * 87.08078 * 220.00748 * 6 4 3 8 8 H 1.09002 * 113.68418 * 139.99180 * 7 6 4 9 9 N 1.46493 * 113.61292 * 270.88614 * 7 6 4 10 10 C 1.34776 * 119.99831 * 252.49624 * 9 7 6 11 11 O 1.21280 * 120.00083 * 0.02562 * 10 9 7 12 12 C 1.50708 * 119.99942 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47039 * 179.97438 * 12 10 9 14 14 C 1.35035 * 125.93017 * 124.99597 * 13 12 10 15 15 C 1.35090 * 107.98515 * 179.97438 * 14 13 12 16 16 C 1.50693 * 126.08186 * 180.02562 * 15 14 13 17 17 O 1.42894 * 109.47348 * 105.23207 * 16 15 14 18 18 Si 1.86302 * 109.47063 * 345.22991 * 16 15 14 19 19 C 1.40851 * 107.84203 * 359.97438 * 15 14 13 20 20 C 1.48420 * 126.03915 * 179.97438 * 19 15 14 21 21 C 1.39322 * 120.11713 * 316.94731 * 20 19 15 22 22 C 1.38024 * 119.87741 * 180.27402 * 21 20 19 23 23 C 1.38315 * 120.12131 * 359.97438 * 22 21 20 24 24 C 1.38321 * 120.24205 * 0.04711 * 23 22 21 25 25 C 1.38020 * 120.11762 * 359.95020 * 24 23 22 26 26 N 1.31622 * 107.92636 * 0.26523 * 19 15 14 27 27 C 1.53779 * 87.07918 * 25.43423 * 7 6 4 28 28 H 1.09000 * 109.47219 * 336.69969 * 3 2 1 29 29 H 1.09011 * 109.46857 * 216.70573 * 3 2 1 30 30 H 1.08999 * 113.61148 * 105.45901 * 6 4 3 31 31 H 1.09001 * 113.61475 * 334.55826 * 6 4 3 32 32 H 0.96998 * 120.00278 * 72.50028 * 9 7 6 33 33 H 1.08998 * 109.47337 * 60.00032 * 12 10 9 34 34 H 1.09002 * 109.46518 * 299.99635 * 12 10 9 35 35 H 1.08007 * 126.01153 * 359.96445 * 14 13 12 36 36 H 1.09008 * 109.46966 * 225.23267 * 16 15 14 37 37 H 0.96707 * 113.99664 * 299.99749 * 17 16 15 38 38 H 1.48494 * 109.99931 * 180.02562 * 18 16 15 39 39 H 1.48507 * 109.99758 * 301.32003 * 18 16 15 40 40 H 1.08007 * 120.06672 * 0.24953 * 21 20 19 41 41 H 1.08009 * 119.93709 * 180.02562 * 22 21 20 42 42 H 1.07998 * 119.88328 * 180.02562 * 23 22 21 43 43 H 1.07992 * 119.94335 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.06208 * 179.97438 * 25 24 23 45 45 H 1.09005 * 113.61442 * 89.11279 * 27 7 6 46 46 H 1.08997 * 113.61312 * 220.01686 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1179 0.1694 -1.4327 5 1 2.5751 0.9344 -1.9877 6 6 3.2658 -1.1573 -2.1961 7 6 4.5668 -0.5841 -2.7824 8 1 5.3741 -1.3131 -2.8522 9 7 4.3696 0.1673 -4.0244 10 6 4.7701 -0.3568 -5.1998 11 8 5.2933 -1.4505 -5.2292 12 6 4.5678 0.4164 -6.4775 13 7 5.0837 -0.3620 -7.6062 14 6 4.3919 -0.7059 -8.7137 15 6 5.2142 -1.4177 -9.5149 16 6 4.8580 -2.0026 -10.8572 17 8 5.4575 -1.2205 -11.8920 18 14 3.0068 -1.9950 -11.0664 19 6 6.4643 -1.5148 -8.8732 20 6 7.6638 -2.2132 -9.3990 21 6 7.5371 -3.4629 -10.0016 22 6 8.6566 -4.1104 -10.4838 23 6 9.9025 -3.5206 -10.3700 24 6 10.0341 -2.2802 -9.7722 25 6 8.9213 -1.6238 -9.2867 26 7 6.3790 -0.8823 -7.7221 27 6 4.6465 0.3053 -1.5304 28 1 2.9717 -0.9430 0.4065 29 1 2.9709 0.8248 0.6143 30 1 2.4868 -1.3219 -2.9404 31 1 3.4218 -2.0193 -1.5474 32 1 3.9509 1.0419 -4.0009 33 1 5.1014 1.3649 -6.4166 34 1 3.5043 0.6064 -6.6225 35 1 3.3620 -0.4561 -8.9222 36 1 5.2261 -3.0270 -10.9164 37 1 5.1749 -0.2956 -11.8997 38 1 2.6424 -2.5700 -12.3861 39 1 2.3695 -2.7789 -9.9778 40 1 6.5647 -3.9244 -10.0910 41 1 8.5595 -5.0791 -10.9515 42 1 10.7759 -4.0305 -10.7489 43 1 11.0093 -1.8243 -9.6855 44 1 9.0251 -0.6556 -8.8197 45 1 5.1800 -0.1568 -0.6997 46 1 4.9822 1.3215 -1.7374 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_12622748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:18 Heat of formation + Delta-G solvation = 96.375529 kcal Electronic energy + Delta-G solvation = -29777.500732 eV Core-core repulsion = 25636.541403 eV Total energy + Delta-G solvation = -4140.959328 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.48907 -41.26478 -39.90167 -39.48260 -37.67057 -37.47496 -34.87973 -34.54885 -32.34830 -32.01943 -31.47663 -30.99823 -28.65267 -26.61965 -26.08148 -24.72947 -23.84441 -23.46334 -22.10002 -21.52125 -20.99162 -20.26201 -18.87001 -18.64004 -18.17373 -17.68070 -17.33739 -16.84624 -16.49614 -16.32918 -16.24475 -15.93774 -15.75413 -15.64938 -15.42121 -15.31476 -14.96967 -14.53607 -14.37363 -14.27852 -14.22104 -14.04250 -13.96749 -13.79129 -13.60245 -13.39653 -13.22701 -13.05565 -12.49042 -12.42354 -12.35623 -12.15137 -11.87592 -11.87237 -11.73050 -11.45591 -11.25705 -11.11908 -10.62508 -10.23029 -10.07927 -9.90987 -9.77150 -9.31815 -5.03264 0.09618 0.43259 0.81427 1.30441 1.40677 1.48594 1.62633 1.75004 1.83287 1.88295 2.02257 2.10811 2.85887 3.08171 3.34987 3.54851 3.60086 3.64282 3.70658 3.74144 3.88631 3.96004 3.97908 3.98892 4.04305 4.15833 4.18973 4.22355 4.42631 4.43293 4.51098 4.53683 4.66990 4.76755 4.77120 4.82816 4.86306 4.92119 4.95960 4.96167 5.07219 5.10350 5.19289 5.27776 5.28173 5.52998 5.54274 5.58840 5.64523 5.93221 6.00665 6.48532 6.59597 6.67846 6.90500 7.19445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.234 3.766 3 C -0.016 4.016 4 C -0.096 4.096 5 H 0.104 0.896 6 C -0.155 4.155 7 C 0.107 3.893 8 H 0.074 0.926 9 N -0.695 5.695 10 C 0.495 3.505 11 O -0.568 6.568 12 C 0.109 3.891 13 N -0.359 5.359 14 C 0.078 3.922 15 C -0.270 4.270 16 C -0.042 4.042 17 O -0.557 6.557 18 Si 0.800 3.200 19 C 0.107 3.893 20 C -0.025 4.025 21 C -0.110 4.110 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.109 4.109 26 N -0.292 5.292 27 C -0.117 4.117 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.421 0.579 33 H 0.146 0.854 34 H 0.180 0.820 35 H 0.228 0.772 36 H 0.092 0.908 37 H 0.391 0.609 38 H -0.300 1.300 39 H -0.287 1.287 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.261 8.160 2.427 8.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.082 4.082 3 C -0.056 4.056 4 C -0.115 4.115 5 H 0.123 0.877 6 C -0.193 4.193 7 C 0.001 3.999 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.281 3.719 11 O -0.445 6.445 12 C -0.014 4.014 13 N -0.141 5.141 14 C -0.067 4.067 15 C -0.282 4.282 16 C -0.152 4.152 17 O -0.364 6.364 18 Si 0.705 3.295 19 C -0.059 4.059 20 C -0.027 4.027 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.128 4.128 26 N -0.113 5.113 27 C -0.155 4.155 28 H 0.149 0.851 29 H 0.162 0.838 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.260 0.740 33 H 0.164 0.836 34 H 0.197 0.803 35 H 0.244 0.756 36 H 0.109 0.891 37 H 0.241 0.759 38 H -0.228 1.228 39 H -0.215 1.215 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.490 6.819 3.386 7.757 hybrid contribution 0.297 -0.651 -0.452 0.846 sum -1.194 6.168 2.934 6.933 Atomic orbital electron populations 1.81321 1.15823 1.11548 1.10869 1.30090 0.96100 0.90935 0.91109 1.19718 0.78348 1.08284 0.99234 1.22534 0.97070 0.97921 0.94020 0.87732 1.23628 0.97254 0.98506 0.99950 1.21883 0.98183 0.95741 0.84115 0.90773 1.45451 1.61920 1.22566 1.04965 1.21145 0.77791 0.86482 0.86520 1.90829 1.43606 1.22960 1.87150 1.22037 1.05178 0.93901 0.80326 1.48160 1.08171 1.42078 1.15682 1.22880 0.99701 0.97444 0.86676 1.20647 0.93910 1.11941 1.01663 1.24705 1.11353 0.95659 0.83481 1.86479 1.72127 1.26665 1.51161 0.94121 0.71145 0.87971 0.76257 1.20816 0.94593 0.98229 0.92214 1.17981 0.90729 0.94483 0.99522 1.21239 0.99453 0.94043 0.98234 1.21373 0.92367 1.00838 0.99762 1.21568 0.98221 0.95457 0.98447 1.21391 0.98998 0.95624 0.98188 1.21281 0.91870 1.00218 0.99433 1.77700 0.99035 1.16537 1.18019 1.23325 0.94627 1.01281 0.96243 0.85057 0.83753 0.92728 0.88243 0.74041 0.83640 0.80319 0.75628 0.89065 0.75915 1.22760 1.21456 0.86070 0.83838 0.83473 0.83717 0.86187 0.86485 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.01 18.54 20.01 0.37 -3.64 16 2 C 0.23 -0.48 15.42 89.44 1.38 0.90 16 3 C -0.02 0.22 5.54 28.79 0.16 0.38 16 4 C -0.10 1.25 3.49 -10.27 -0.04 1.22 16 5 H 0.10 -1.45 8.12 -2.39 -0.02 -1.47 16 6 C -0.15 1.13 7.43 31.12 0.23 1.37 16 7 C 0.11 -0.66 4.32 45.52 0.20 -0.46 16 8 H 0.07 0.07 7.46 -2.39 -0.02 0.05 16 9 N -0.70 5.51 5.26 -440.04 -2.32 3.19 16 10 C 0.50 -0.18 7.86 87.66 0.69 0.51 16 11 O -0.57 -7.39 15.29 -3.03 -0.05 -7.43 16 12 C 0.11 -0.87 6.99 85.64 0.60 -0.27 16 13 N -0.36 -0.72 3.40 -351.90 -1.20 -1.92 16 14 C 0.08 -0.13 9.96 83.48 0.83 0.71 16 15 C -0.27 -1.24 5.35 -19.95 -0.11 -1.35 16 16 C -0.04 -0.12 2.51 71.23 0.18 0.06 16 17 O -0.56 -1.91 12.88 -148.98 -1.92 -3.83 16 18 Si 0.80 -1.98 30.74 68.60 2.11 0.13 16 19 C 0.11 1.20 6.66 42.53 0.28 1.48 16 20 C -0.03 -0.30 5.74 -20.04 -0.12 -0.42 16 21 C -0.11 -1.09 8.89 22.48 0.20 -0.89 16 22 C -0.13 -0.81 10.03 22.24 0.22 -0.58 16 23 C -0.12 -0.59 10.04 22.31 0.22 -0.37 16 24 C -0.12 -0.77 10.03 22.24 0.22 -0.55 16 25 C -0.11 -1.09 9.78 22.48 0.22 -0.88 16 26 N -0.29 -3.41 11.66 -48.15 -0.56 -3.97 16 27 C -0.12 1.61 7.39 31.12 0.23 1.84 16 28 H 0.13 -2.18 7.85 -2.39 -0.02 -2.20 16 29 H 0.14 -2.70 8.14 -2.38 -0.02 -2.72 16 30 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.10 -0.78 7.90 -2.39 -0.02 -0.79 16 32 H 0.42 -6.69 8.70 -92.71 -0.81 -7.50 16 33 H 0.15 -1.91 8.14 -2.39 -0.02 -1.93 16 34 H 0.18 -3.30 8.07 -2.39 -0.02 -3.31 16 35 H 0.23 -2.87 6.40 -2.91 -0.02 -2.89 16 36 H 0.09 0.55 5.58 -2.38 -0.01 0.54 16 37 H 0.39 -2.17 8.70 -74.05 -0.64 -2.82 16 38 H -0.30 -1.56 7.11 99.48 0.71 -0.86 16 39 H -0.29 -0.78 7.11 99.48 0.71 -0.08 16 40 H 0.12 1.01 6.22 -2.91 -0.02 1.00 16 41 H 0.14 0.24 8.06 -2.91 -0.02 0.21 16 42 H 0.15 -0.07 8.06 -2.91 -0.02 -0.09 16 43 H 0.15 0.17 8.06 -2.91 -0.02 0.15 16 44 H 0.12 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.12 -1.84 8.10 -2.38 -0.02 -1.86 16 46 H 0.09 -1.49 8.14 -2.39 -0.02 -1.51 16 Total: 0.00 -43.62 397.33 1.68 -41.94 By element: Atomic # 1 Polarization: -26.80 SS G_CDS: -0.37 Total: -27.17 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.61 Total: 2.70 kcal Atomic # 7 Polarization: -2.63 SS G_CDS: -3.70 Total: -6.34 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.97 Total: -11.26 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.11 Total: 0.13 kcal Total: -43.62 1.68 -41.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_12622748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.318 kcal (2) G-P(sol) polarization free energy of solvation -43.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds