Wall clock time and date at job start Tue Mar 9 2021 13:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47346 * 199.29734 * 3 2 1 5 5 H 1.09003 * 112.84801 * 316.19718 * 4 3 2 6 6 C 1.53781 * 113.61529 * 185.00128 * 4 3 2 7 7 C 1.53786 * 87.17350 * 219.97788 * 6 4 3 8 8 H 1.08992 * 113.61675 * 140.02412 * 7 6 4 9 9 N 1.46506 * 113.61079 * 270.92464 * 7 6 4 10 10 C 1.34772 * 120.00033 * 204.99682 * 9 7 6 11 11 O 1.21601 * 119.99599 * 0.02562 * 10 9 7 12 12 C 1.47558 * 120.00462 * 180.02562 * 10 9 7 13 13 C 1.39832 * 119.99661 * 359.72277 * 12 10 9 14 14 C 1.36562 * 119.99870 * 179.73873 * 13 12 10 15 15 C 1.39826 * 119.99605 * 0.56397 * 14 13 12 16 16 C 1.47564 * 119.99527 * 179.71621 * 15 14 13 17 17 C 1.34978 * 125.27916 * 359.97327 * 16 15 14 18 18 C 1.37801 * 114.70169 * 179.97438 * 17 16 15 19 19 C 1.33741 * 115.07963 * 0.02562 * 18 17 16 20 20 C 1.50705 * 125.11272 * 179.97438 * 19 18 17 21 21 O 1.42890 * 109.47139 * 299.99700 * 20 19 18 22 22 Si 1.86306 * 109.46699 * 179.97438 * 20 19 18 23 23 S 1.75858 * 109.76403 * 359.76540 * 19 18 17 24 24 C 1.39819 * 120.00574 * 359.69064 * 15 14 13 25 25 C 1.36568 * 119.99954 * 0.02562 * 24 15 14 26 26 C 1.53781 * 113.61611 * 87.50322 * 4 3 2 27 27 H 1.08997 * 109.46540 * 79.29430 * 3 2 1 28 28 H 1.09002 * 109.46941 * 319.30019 * 3 2 1 29 29 H 1.09002 * 113.61445 * 334.56787 * 6 4 3 30 30 H 1.09002 * 113.61408 * 105.38518 * 6 4 3 31 31 H 0.97002 * 119.99888 * 25.00079 * 9 7 6 32 32 H 1.08003 * 120.00350 * 0.02696 * 13 12 10 33 33 H 1.07994 * 120.00123 * 180.27856 * 14 13 12 34 34 H 1.08001 * 122.64713 * 359.94873 * 17 16 15 35 35 H 1.08001 * 122.45590 * 179.97438 * 18 17 16 36 36 H 1.08998 * 109.46970 * 60.00066 * 20 19 18 37 37 H 0.96703 * 113.99603 * 180.02562 * 21 20 19 38 38 H 1.48501 * 109.99816 * 298.68461 * 22 20 19 39 39 H 1.48500 * 109.99868 * 59.99949 * 22 20 19 40 40 H 1.08001 * 120.00090 * 180.02562 * 24 15 14 41 41 H 1.07994 * 119.99838 * 180.02562 * 25 24 15 42 42 H 1.09005 * 113.61471 * 254.53285 * 26 4 3 43 43 H 1.08996 * 113.61178 * 25.34627 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3622 0.4767 5 1 2.5747 2.1965 0.0322 6 6 4.6461 1.5100 0.3980 7 6 4.5682 2.2446 1.7468 8 1 5.3756 1.9865 2.4319 9 7 4.3709 3.6905 1.6170 10 6 4.7726 4.5167 2.6031 11 8 5.2993 4.0620 3.6004 12 6 4.5733 5.9729 2.4727 13 6 3.9730 6.4962 1.3234 14 6 3.7837 7.8435 1.2049 15 6 4.2010 8.7006 2.2278 16 6 4.0022 10.1569 2.0971 17 6 3.4322 10.7742 1.0407 18 6 3.3559 12.1459 1.1476 19 6 3.8572 12.6552 2.2780 20 6 3.8910 14.1206 2.6284 21 8 4.6497 14.8279 1.6456 22 14 4.6814 14.3410 4.3010 23 16 4.4655 11.3571 3.2966 24 6 4.8062 8.1778 3.3748 25 6 4.9902 6.8300 3.4958 26 6 3.2649 1.4646 2.0040 27 1 2.9713 -0.1901 -1.0098 28 1 2.9717 -0.7783 0.6702 29 1 5.1797 0.5609 0.4480 30 1 4.9820 2.1416 -0.4244 31 1 3.9510 4.0532 0.8213 32 1 3.6547 5.8346 0.5313 33 1 3.3159 8.2473 0.3193 34 1 3.0653 10.2355 0.1795 35 1 2.9238 12.7643 0.3747 36 1 2.8739 14.5117 2.6532 37 1 4.7140 15.7790 1.8080 38 1 3.8836 13.6364 5.3366 39 1 6.0686 13.8113 4.2810 40 1 5.1281 8.8399 4.1650 41 1 5.4573 6.4263 4.3818 42 1 2.4856 2.0607 2.4789 43 1 3.4194 0.5029 2.4931 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534922_13308390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:06 Heat of formation + Delta-G solvation = 48.049889 kcal Electronic energy + Delta-G solvation = -26503.554646 eV Core-core repulsion = 22607.815307 eV Total energy + Delta-G solvation = -3895.739339 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68260 -40.58520 -39.50132 -38.83929 -37.48529 -37.39492 -34.87534 -33.53936 -32.36782 -31.32597 -30.44304 -27.34578 -26.90962 -25.18461 -24.30150 -23.94976 -23.30197 -21.89861 -20.48714 -20.16371 -19.28760 -18.66758 -18.57664 -18.27873 -17.23241 -17.06697 -16.44862 -16.32344 -16.20593 -15.89334 -15.74951 -15.60386 -15.40370 -15.04569 -14.81506 -14.63719 -14.44326 -14.27264 -14.11714 -14.05273 -13.76734 -13.64171 -13.39210 -13.23190 -13.19153 -13.11327 -12.67731 -12.58190 -12.34808 -12.16590 -12.12193 -11.80089 -11.68153 -11.38808 -11.01457 -10.82281 -10.42689 -10.25872 -10.15710 -9.59242 -9.06377 -5.31735 -0.92705 0.20973 0.27731 0.39108 0.72972 1.11376 1.46806 1.57448 1.78404 1.83158 1.84169 1.96234 1.97242 2.78983 2.87172 3.25107 3.26089 3.37358 3.41084 3.57912 3.60187 3.67330 3.69526 3.73028 3.75905 4.05583 4.10488 4.22792 4.25085 4.31482 4.37322 4.40550 4.47025 4.54057 4.54771 4.55827 4.70187 4.82393 4.86240 4.88068 4.93999 4.98046 5.04460 5.16862 5.22612 5.24635 5.41723 5.45773 5.66603 6.36764 6.46625 6.60408 7.12713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.202 3.798 3 C -0.017 4.017 4 C -0.111 4.111 5 H 0.097 0.903 6 C -0.137 4.137 7 C 0.119 3.881 8 H 0.109 0.891 9 N -0.711 5.711 10 C 0.563 3.437 11 O -0.530 6.530 12 C -0.137 4.137 13 C -0.077 4.077 14 C -0.109 4.109 15 C 0.015 3.985 16 C -0.146 4.146 17 C -0.117 4.117 18 C -0.099 4.099 19 C -0.173 4.173 20 C -0.034 4.034 21 O -0.543 6.543 22 Si 0.668 3.332 23 S 0.113 5.887 24 C -0.121 4.121 25 C -0.048 4.048 26 C -0.150 4.150 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.401 0.599 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.385 0.615 38 H -0.238 1.238 39 H -0.235 1.235 40 H 0.129 0.871 41 H 0.142 0.858 42 H 0.073 0.927 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 3.757 -2.824 5.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.131 4.131 5 H 0.115 0.885 6 C -0.175 4.175 7 C 0.013 3.987 8 H 0.127 0.873 9 N -0.362 5.362 10 C 0.351 3.649 11 O -0.407 6.407 12 C -0.141 4.141 13 C -0.096 4.096 14 C -0.129 4.129 15 C 0.013 3.987 16 C -0.263 4.263 17 C -0.148 4.148 18 C -0.130 4.130 19 C -0.291 4.291 20 C -0.147 4.147 21 O -0.349 6.349 22 Si 0.567 3.433 23 S 0.380 5.620 24 C -0.140 4.140 25 C -0.066 4.066 26 C -0.189 4.189 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.237 0.763 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.103 0.897 37 H 0.233 0.767 38 H -0.162 1.162 39 H -0.158 1.158 40 H 0.147 0.853 41 H 0.160 0.840 42 H 0.092 0.908 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.758 2.387 -0.204 2.971 hybrid contribution -0.848 0.076 -2.236 2.392 sum 0.909 2.462 -2.439 3.583 Atomic orbital electron populations 1.81295 1.13160 1.08087 1.08616 1.29225 0.95347 0.93594 0.93404 1.19342 0.81675 0.99422 1.05286 1.22629 0.96737 0.96447 0.97250 0.88495 1.23388 0.94995 1.01807 0.97272 1.21879 0.98894 0.79236 0.98650 0.87272 1.45573 1.62647 1.06368 1.21644 1.18191 0.77761 0.86115 0.82803 1.90816 1.42713 1.77551 1.29636 1.19982 1.04432 0.92971 0.96700 1.20951 0.96792 0.95458 0.96405 1.20871 1.00550 0.92758 0.98747 1.18303 0.96676 0.89208 0.94541 1.23098 1.08297 0.95758 0.99118 1.20385 1.01309 0.94082 0.99033 1.19994 1.00920 0.94443 0.97599 1.23740 1.08013 0.97397 0.99908 1.23972 0.99982 0.88047 1.02745 1.86506 1.74286 1.24365 1.49777 0.94890 0.81760 0.90899 0.75781 1.84234 1.60193 0.96337 1.21275 1.20972 1.00106 0.95574 0.97319 1.20939 0.95373 0.92217 0.98109 1.23642 0.98315 1.01614 0.95318 0.86892 0.86988 0.87697 0.90164 0.76349 0.85185 0.84726 0.83476 0.83439 0.89722 0.76678 1.16219 1.15836 0.85327 0.84018 0.90782 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -1.81 18.54 42.15 0.78 -1.03 16 2 C 0.20 -0.01 15.42 -20.76 -0.32 -0.33 16 3 C -0.02 0.09 5.54 -29.52 -0.16 -0.08 16 4 C -0.11 0.51 3.49 -89.81 -0.31 0.20 16 5 H 0.10 -0.43 8.12 -51.93 -0.42 -0.85 16 6 C -0.14 0.69 7.38 -25.92 -0.19 0.50 16 7 C 0.12 -0.26 4.34 -66.97 -0.29 -0.55 16 8 H 0.11 -0.04 7.46 -51.93 -0.39 -0.43 16 9 N -0.71 1.01 5.21 -53.91 -0.28 0.73 16 10 C 0.56 1.10 7.76 -12.46 -0.10 1.01 16 11 O -0.53 -3.03 15.93 5.28 0.08 -2.94 16 12 C -0.14 -0.15 5.88 -104.91 -0.62 -0.77 16 13 C -0.08 0.08 9.48 -39.59 -0.38 -0.29 16 14 C -0.11 0.05 9.48 -39.59 -0.38 -0.32 16 15 C 0.01 0.02 5.88 -104.91 -0.62 -0.60 16 16 C -0.15 -0.27 6.37 -36.94 -0.24 -0.51 16 17 C -0.12 -0.10 9.64 -40.90 -0.39 -0.50 16 18 C -0.10 -0.13 10.00 -41.32 -0.41 -0.55 16 19 C -0.17 -0.34 5.76 -35.88 -0.21 -0.54 16 20 C -0.03 0.02 2.95 36.01 0.11 0.12 16 21 O -0.54 0.19 12.83 -35.23 -0.45 -0.26 16 22 Si 0.67 -0.76 30.96 -169.99 -5.26 -6.02 16 23 S 0.11 0.27 19.46 -107.50 -2.09 -1.82 16 24 C -0.12 -0.18 9.54 -39.59 -0.38 -0.56 16 25 C -0.05 -0.08 9.53 -39.59 -0.38 -0.46 16 26 C -0.15 0.42 7.44 -25.78 -0.19 0.23 16 27 H 0.11 -0.78 8.14 -51.93 -0.42 -1.20 16 28 H 0.11 -0.73 7.84 -51.93 -0.41 -1.14 16 29 H 0.10 -0.66 8.10 -51.93 -0.42 -1.08 16 30 H 0.08 -0.43 8.14 -51.93 -0.42 -0.85 16 31 H 0.40 -1.59 6.71 -40.82 -0.27 -1.86 16 32 H 0.13 -0.55 6.38 -52.48 -0.34 -0.89 16 33 H 0.13 -0.35 6.74 -52.49 -0.35 -0.70 16 34 H 0.15 -0.23 6.88 -52.49 -0.36 -0.59 16 35 H 0.15 -0.01 8.06 -52.49 -0.42 -0.43 16 36 H 0.09 -0.20 7.96 -51.93 -0.41 -0.61 16 37 H 0.39 -2.12 8.74 45.56 0.40 -1.72 16 38 H -0.24 -0.27 7.11 56.52 0.40 0.13 16 39 H -0.23 -0.48 7.11 56.52 0.40 -0.08 16 40 H 0.13 0.09 7.26 -52.49 -0.38 -0.29 16 41 H 0.14 0.25 7.64 -52.49 -0.40 -0.15 16 42 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 43 H 0.10 -0.36 7.89 -51.93 -0.41 -0.77 16 LS Contribution 383.25 15.07 5.78 5.78 Total: 0.00 -11.61 383.25 -11.95 -23.56 By element: Atomic # 1 Polarization: -8.94 SS G_CDS: -5.06 Total: -14.00 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -5.45 Total: -4.00 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: 0.50 Total: -0.30 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: -0.37 Total: -3.20 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: -5.26 Total: -6.02 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.09 Total: -1.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -11.61 -11.95 -23.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_13308390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.612 kcal (2) G-P(sol) polarization free energy of solvation -11.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds