Wall clock time and date at job start Tue Mar 9 2021 13:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47346 * 199.29734 * 3 2 1 5 5 H 1.09003 * 112.84801 * 316.19718 * 4 3 2 6 6 C 1.53781 * 113.61529 * 185.00128 * 4 3 2 7 7 C 1.53786 * 87.17350 * 219.97788 * 6 4 3 8 8 H 1.08992 * 113.61675 * 140.02412 * 7 6 4 9 9 N 1.46506 * 113.61079 * 270.92464 * 7 6 4 10 10 C 1.34772 * 120.00033 * 204.99682 * 9 7 6 11 11 O 1.21601 * 119.99599 * 0.02562 * 10 9 7 12 12 C 1.47558 * 120.00462 * 180.02562 * 10 9 7 13 13 C 1.39832 * 119.99661 * 359.72277 * 12 10 9 14 14 C 1.36562 * 119.99870 * 179.73873 * 13 12 10 15 15 C 1.39826 * 119.99605 * 0.56397 * 14 13 12 16 16 C 1.47564 * 119.99527 * 179.71621 * 15 14 13 17 17 C 1.34978 * 125.27916 * 359.97327 * 16 15 14 18 18 C 1.37801 * 114.70169 * 179.97438 * 17 16 15 19 19 C 1.33741 * 115.07963 * 0.02562 * 18 17 16 20 20 C 1.50705 * 125.11272 * 179.97438 * 19 18 17 21 21 O 1.42890 * 109.47139 * 299.99700 * 20 19 18 22 22 Si 1.86306 * 109.46699 * 179.97438 * 20 19 18 23 23 S 1.75858 * 109.76403 * 359.76540 * 19 18 17 24 24 C 1.39819 * 120.00574 * 359.69064 * 15 14 13 25 25 C 1.36568 * 119.99954 * 0.02562 * 24 15 14 26 26 C 1.53781 * 113.61611 * 87.50322 * 4 3 2 27 27 H 1.08997 * 109.46540 * 79.29430 * 3 2 1 28 28 H 1.09002 * 109.46941 * 319.30019 * 3 2 1 29 29 H 1.09002 * 113.61445 * 334.56787 * 6 4 3 30 30 H 1.09002 * 113.61408 * 105.38518 * 6 4 3 31 31 H 0.97002 * 119.99888 * 25.00079 * 9 7 6 32 32 H 1.08003 * 120.00350 * 0.02696 * 13 12 10 33 33 H 1.07994 * 120.00123 * 180.27856 * 14 13 12 34 34 H 1.08001 * 122.64713 * 359.94873 * 17 16 15 35 35 H 1.08001 * 122.45590 * 179.97438 * 18 17 16 36 36 H 1.08998 * 109.46970 * 60.00066 * 20 19 18 37 37 H 0.96703 * 113.99603 * 180.02562 * 21 20 19 38 38 H 1.48501 * 109.99816 * 298.68461 * 22 20 19 39 39 H 1.48500 * 109.99868 * 59.99949 * 22 20 19 40 40 H 1.08001 * 120.00090 * 180.02562 * 24 15 14 41 41 H 1.07994 * 119.99838 * 180.02562 * 25 24 15 42 42 H 1.09005 * 113.61471 * 254.53285 * 26 4 3 43 43 H 1.08996 * 113.61178 * 25.34627 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3622 0.4767 5 1 2.5747 2.1965 0.0322 6 6 4.6461 1.5100 0.3980 7 6 4.5682 2.2446 1.7468 8 1 5.3756 1.9865 2.4319 9 7 4.3709 3.6905 1.6170 10 6 4.7726 4.5167 2.6031 11 8 5.2993 4.0620 3.6004 12 6 4.5733 5.9729 2.4727 13 6 3.9730 6.4962 1.3234 14 6 3.7837 7.8435 1.2049 15 6 4.2010 8.7006 2.2278 16 6 4.0022 10.1569 2.0971 17 6 3.4322 10.7742 1.0407 18 6 3.3559 12.1459 1.1476 19 6 3.8572 12.6552 2.2780 20 6 3.8910 14.1206 2.6284 21 8 4.6497 14.8279 1.6456 22 14 4.6814 14.3410 4.3010 23 16 4.4655 11.3571 3.2966 24 6 4.8062 8.1778 3.3748 25 6 4.9902 6.8300 3.4958 26 6 3.2649 1.4646 2.0040 27 1 2.9713 -0.1901 -1.0098 28 1 2.9717 -0.7783 0.6702 29 1 5.1797 0.5609 0.4480 30 1 4.9820 2.1416 -0.4244 31 1 3.9510 4.0532 0.8213 32 1 3.6547 5.8346 0.5313 33 1 3.3159 8.2473 0.3193 34 1 3.0653 10.2355 0.1795 35 1 2.9238 12.7643 0.3747 36 1 2.8739 14.5117 2.6532 37 1 4.7140 15.7790 1.8080 38 1 3.8836 13.6364 5.3366 39 1 6.0686 13.8113 4.2810 40 1 5.1281 8.8399 4.1650 41 1 5.4573 6.4263 4.3818 42 1 2.4856 2.0607 2.4789 43 1 3.4194 0.5029 2.4931 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_13308390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:05 Heat of formation + Delta-G solvation = 48.291380 kcal Electronic energy + Delta-G solvation = -26503.544174 eV Core-core repulsion = 22607.815307 eV Total energy + Delta-G solvation = -3895.728867 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66664 -40.49175 -39.50901 -38.86571 -37.49065 -37.40590 -34.90572 -33.55043 -32.36726 -31.17897 -30.40048 -27.36188 -26.60093 -25.13623 -24.24127 -23.92623 -23.30628 -21.91562 -20.31556 -20.20102 -19.23252 -18.63234 -18.45986 -18.25591 -17.19139 -17.11004 -16.34264 -16.26283 -16.16150 -15.81519 -15.73583 -15.57412 -15.40794 -15.03858 -14.74471 -14.68298 -14.41102 -14.28878 -14.16284 -14.03746 -13.72620 -13.46543 -13.31351 -13.27069 -13.16590 -13.07549 -12.69976 -12.39812 -12.34868 -12.18343 -11.87082 -11.85350 -11.45223 -11.17228 -11.10453 -10.88748 -10.37049 -10.27826 -10.10758 -9.73989 -9.12167 -5.27450 -0.98883 0.14664 0.24978 0.30471 0.66219 1.15688 1.44973 1.54421 1.83557 1.86729 1.88352 1.88943 2.01850 2.74486 3.09374 3.30042 3.39091 3.53814 3.63286 3.64486 3.72212 3.74886 3.81330 3.92193 3.98118 4.11168 4.22742 4.32564 4.42016 4.42887 4.46742 4.52938 4.68665 4.77272 4.83187 4.86763 4.90702 4.93253 4.97663 5.01292 5.10502 5.14204 5.18615 5.20364 5.23162 5.27264 5.39073 5.61508 5.66659 6.42552 6.68497 6.83046 7.09933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.233 3.767 3 C -0.015 4.015 4 C -0.100 4.100 5 H 0.098 0.902 6 C -0.115 4.115 7 C 0.102 3.898 8 H 0.087 0.913 9 N -0.694 5.694 10 C 0.559 3.441 11 O -0.580 6.580 12 C -0.149 4.149 13 C -0.065 4.065 14 C -0.106 4.106 15 C 0.004 3.996 16 C -0.153 4.153 17 C -0.113 4.113 18 C -0.104 4.104 19 C -0.186 4.186 20 C -0.036 4.036 21 O -0.559 6.559 22 Si 0.748 3.252 23 S 0.057 5.943 24 C -0.133 4.133 25 C -0.064 4.064 26 C -0.155 4.155 27 H 0.146 0.854 28 H 0.136 0.864 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.415 0.585 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.177 0.823 35 H 0.166 0.834 36 H 0.111 0.889 37 H 0.407 0.593 38 H -0.274 1.274 39 H -0.285 1.285 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 3.673 -5.997 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.083 4.083 3 C -0.055 4.055 4 C -0.120 4.120 5 H 0.117 0.883 6 C -0.153 4.153 7 C -0.003 4.003 8 H 0.105 0.895 9 N -0.345 5.345 10 C 0.348 3.652 11 O -0.461 6.461 12 C -0.152 4.152 13 C -0.083 4.083 14 C -0.126 4.126 15 C 0.002 3.998 16 C -0.269 4.269 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.303 4.303 20 C -0.149 4.149 21 O -0.370 6.370 22 Si 0.653 3.347 23 S 0.323 5.677 24 C -0.152 4.152 25 C -0.083 4.083 26 C -0.194 4.194 27 H 0.163 0.837 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.111 0.889 31 H 0.254 0.746 32 H 0.185 0.815 33 H 0.182 0.818 34 H 0.194 0.806 35 H 0.183 0.817 36 H 0.129 0.871 37 H 0.259 0.741 38 H -0.200 1.200 39 H -0.212 1.212 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.068 0.932 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.349 2.330 -3.426 4.358 hybrid contribution -0.656 0.079 -1.224 1.391 sum 0.694 2.409 -4.650 5.283 Atomic orbital electron populations 1.81321 1.15889 1.10881 1.11629 1.30139 0.96161 0.91116 0.90852 1.19727 0.78233 0.99723 1.07767 1.22544 0.97292 0.96849 0.95286 0.88332 1.23340 0.94448 1.02246 0.95256 1.22069 0.98669 0.78881 1.00712 0.89530 1.45484 1.61298 1.06616 1.21132 1.18399 0.77351 0.86738 0.82740 1.90787 1.45264 1.78333 1.31685 1.20057 1.05193 0.92481 0.97503 1.21298 0.95060 0.95866 0.96099 1.21220 0.99740 0.92659 0.98932 1.18474 0.97004 0.89386 0.94970 1.23190 1.08991 0.95700 0.99042 1.20738 1.00146 0.94132 0.99293 1.20296 1.00510 0.94925 0.97620 1.24101 1.08049 0.98263 0.99916 1.24022 1.01415 0.87015 1.02413 1.86451 1.74374 1.26375 1.49760 0.94126 0.77393 0.89216 0.73976 1.84461 1.61569 0.98417 1.23261 1.20980 1.00905 0.95400 0.97904 1.20921 0.96295 0.92625 0.98424 1.23706 0.97099 1.01545 0.97050 0.83660 0.84648 0.85736 0.88879 0.74632 0.81475 0.81804 0.80601 0.81691 0.87106 0.74126 1.20007 1.21214 0.85837 0.85349 0.93151 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.64 18.54 20.01 0.37 -4.27 16 2 C 0.23 -0.23 15.42 89.44 1.38 1.15 16 3 C -0.02 0.19 5.54 28.79 0.16 0.35 16 4 C -0.10 1.15 3.49 -10.27 -0.04 1.12 16 5 H 0.10 -1.11 8.12 -2.39 -0.02 -1.13 16 6 C -0.12 1.48 7.38 31.12 0.23 1.71 16 7 C 0.10 -0.47 4.34 45.61 0.20 -0.28 16 8 H 0.09 0.03 7.46 -2.39 -0.02 0.01 16 9 N -0.69 2.17 5.21 -442.73 -2.31 -0.13 16 10 C 0.56 2.94 7.76 86.70 0.67 3.61 16 11 O -0.58 -8.27 15.93 -4.03 -0.06 -8.34 16 12 C -0.15 -0.47 5.88 -20.05 -0.12 -0.59 16 13 C -0.06 0.22 9.48 22.26 0.21 0.43 16 14 C -0.11 0.25 9.48 22.26 0.21 0.46 16 15 C 0.00 0.01 5.88 -20.05 -0.12 -0.11 16 16 C -0.15 -0.65 6.37 23.98 0.15 -0.49 16 17 C -0.11 -0.07 9.64 21.42 0.21 0.14 16 18 C -0.10 -0.18 10.00 21.14 0.21 0.03 16 19 C -0.19 -0.76 5.76 24.67 0.14 -0.62 16 20 C -0.04 0.05 2.95 71.24 0.21 0.26 16 21 O -0.56 0.94 12.83 -148.98 -1.91 -0.97 16 22 Si 0.75 -0.84 30.96 68.60 2.12 1.29 16 23 S 0.06 0.39 19.46 -56.49 -1.10 -0.71 16 24 C -0.13 -0.73 9.54 22.26 0.21 -0.52 16 25 C -0.06 -0.40 9.53 22.26 0.21 -0.19 16 26 C -0.16 0.92 7.44 31.21 0.23 1.16 16 27 H 0.15 -2.65 8.14 -2.39 -0.02 -2.67 16 28 H 0.14 -2.25 7.84 -2.39 -0.02 -2.27 16 29 H 0.12 -2.01 8.10 -2.39 -0.02 -2.03 16 30 H 0.09 -1.34 8.14 -2.39 -0.02 -1.36 16 31 H 0.42 -4.02 6.71 -92.71 -0.62 -4.64 16 32 H 0.17 -1.94 6.38 -2.91 -0.02 -1.96 16 33 H 0.16 -1.39 6.74 -2.91 -0.02 -1.41 16 34 H 0.18 -1.05 6.88 -2.91 -0.02 -1.07 16 35 H 0.17 -0.35 8.06 -2.91 -0.02 -0.38 16 36 H 0.11 -0.71 7.96 -2.39 -0.02 -0.73 16 37 H 0.41 -5.04 8.74 -74.06 -0.65 -5.69 16 38 H -0.27 -1.22 7.11 99.48 0.71 -0.51 16 39 H -0.29 -2.00 7.11 99.48 0.71 -1.29 16 40 H 0.12 0.66 7.26 -2.91 -0.02 0.64 16 41 H 0.13 1.01 7.64 -2.91 -0.02 0.99 16 42 H 0.05 -0.04 8.14 -2.38 -0.02 -0.06 16 43 H 0.11 -0.85 7.89 -2.39 -0.02 -0.87 16 Total: 0.00 -33.28 383.25 1.33 -31.96 By element: Atomic # 1 Polarization: -26.29 SS G_CDS: -0.15 Total: -26.45 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 4.37 Total: 7.63 kcal Atomic # 7 Polarization: -2.47 SS G_CDS: -1.94 Total: -4.40 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -1.98 Total: -9.31 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: 2.12 Total: 1.29 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.10 Total: -0.71 kcal Total: -33.28 1.33 -31.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_13308390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.248 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds