Wall clock time and date at job start Tue Mar 9 2021 13:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53005 * 109.46905 * 159.87224 * 3 2 1 5 5 H 1.08995 * 112.84826 * 43.80082 * 4 3 2 6 6 C 1.54057 * 113.61764 * 272.49519 * 4 3 2 7 7 C 1.53782 * 86.98318 * 220.01939 * 6 4 3 8 8 H 1.09006 * 113.60916 * 140.01736 * 7 6 4 9 9 N 1.46500 * 113.61502 * 270.83693 * 7 6 4 10 10 C 1.34771 * 119.99931 * 254.13501 * 9 7 6 11 11 O 1.21592 * 120.00029 * 0.02562 * 10 9 7 12 12 C 1.47536 * 119.99791 * 180.02562 * 10 9 7 13 13 C 1.39667 * 120.19418 * 359.97438 * 12 10 9 14 14 C 1.37825 * 119.90904 * 180.02562 * 13 12 10 15 15 C 1.38501 * 120.30104 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.80695 * 180.02562 * 15 14 13 17 17 O 1.42893 * 109.47276 * 245.00133 * 16 15 14 18 18 Si 1.86301 * 109.46651 * 5.00088 * 16 15 14 19 19 C 1.38099 * 120.39150 * 0.04528 * 15 14 13 20 20 C 1.38667 * 120.08093 * 359.95370 * 19 15 14 21 21 O 1.35658 * 120.15006 * 180.29424 * 20 19 15 22 22 C 1.53782 * 113.61314 * 175.00113 * 4 3 2 23 23 H 1.08994 * 109.47475 * 39.87145 * 3 2 1 24 24 H 1.09001 * 109.47062 * 279.87094 * 3 2 1 25 25 H 1.09002 * 113.69357 * 105.50585 * 6 4 3 26 26 H 1.09004 * 113.61021 * 334.52522 * 6 4 3 27 27 H 0.96994 * 119.99645 * 74.14272 * 9 7 6 28 28 H 1.08005 * 120.04268 * 359.97438 * 13 12 10 29 29 H 1.08004 * 119.84813 * 179.97438 * 14 13 12 30 30 H 1.08997 * 109.46654 * 124.99832 * 16 15 14 31 31 H 0.96706 * 114.00241 * 59.99561 * 17 16 15 32 32 H 1.48506 * 109.99476 * 179.97438 * 18 16 15 33 33 H 1.48497 * 110.00362 * 301.31677 * 18 16 15 34 34 H 1.07996 * 119.95988 * 180.02562 * 19 15 14 35 35 H 0.96693 * 114.00154 * 269.72957 * 21 20 19 36 36 H 1.08994 * 113.61740 * 25.43096 * 22 4 3 37 37 H 1.09006 * 113.61244 * 254.52559 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3554 -0.4964 5 1 2.5746 2.1959 -0.0641 6 6 3.2651 1.4358 -2.0278 7 6 4.5657 2.2180 -1.7798 8 1 5.3729 1.9504 -2.4617 9 7 4.3683 3.6657 -1.6721 10 6 4.7402 4.4737 -2.6846 11 8 5.2391 4.0011 -3.6877 12 6 4.5419 5.9316 -2.5758 13 6 3.9687 6.4787 -1.4257 14 6 3.7858 7.8414 -1.3305 15 6 4.1683 8.6721 -2.3706 16 6 3.9636 10.1607 -2.2545 17 8 3.0157 10.5890 -3.2342 18 14 3.3251 10.5687 -0.5526 19 6 4.7359 8.1445 -3.5137 20 6 4.9274 6.7757 -3.6264 21 8 5.4903 6.2564 -4.7462 22 6 4.6461 1.5043 -0.4200 23 1 2.9718 -0.7878 -0.6587 24 1 2.9714 -0.1754 1.0125 25 1 2.4868 2.0251 -2.5126 26 1 3.4219 0.4672 -2.5027 27 1 3.9701 4.0426 -0.8720 28 1 3.6685 5.8346 -0.6123 29 1 3.3420 8.2634 -0.4409 30 1 4.9122 10.6717 -2.4190 31 1 2.1465 10.1739 -3.1484 32 1 3.1197 12.0340 -0.4251 33 1 2.0481 9.8528 -0.3039 34 1 5.0320 8.7987 -4.3203 35 1 4.8526 6.0200 -5.4336 36 1 5.1797 0.5546 -0.4562 37 1 4.9819 2.1490 0.3923 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_13422076.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:08 Heat of formation + Delta-G solvation = -28.624554 kcal Electronic energy + Delta-G solvation = -22085.624026 eV Core-core repulsion = 18602.705196 eV Total energy + Delta-G solvation = -3482.918830 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.77205 -40.67475 -39.30563 -38.43246 -37.44354 -37.22925 -34.71652 -32.76541 -31.10794 -30.87911 -27.54823 -26.58157 -24.64635 -23.91403 -23.30881 -21.78011 -20.29071 -19.43363 -18.91058 -18.32980 -18.28565 -17.29630 -16.68505 -16.51038 -16.30647 -16.13114 -15.86745 -15.75908 -15.52940 -15.19910 -14.87922 -14.62929 -14.27563 -14.01922 -13.75181 -13.66541 -13.34964 -13.18818 -13.02991 -12.97360 -12.38328 -12.31951 -12.15580 -11.83077 -11.59970 -11.42598 -11.07556 -10.95573 -10.63669 -10.20773 -9.97266 -9.77572 -4.90273 -0.41535 0.14701 1.27734 1.60778 1.71104 1.85155 1.90160 1.98750 2.07122 2.57113 3.10312 3.11322 3.40183 3.47829 3.57343 3.69124 3.75450 3.77778 3.95234 4.00863 4.08809 4.27285 4.41699 4.44982 4.63060 4.71361 4.76002 4.80603 4.89769 4.95416 4.99745 5.02693 5.11935 5.17385 5.23005 5.24227 5.31187 5.59425 5.68640 6.45251 6.50045 6.69534 6.69915 7.19726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.234 3.766 3 C -0.015 4.015 4 C -0.100 4.100 5 H 0.099 0.901 6 C -0.155 4.155 7 C 0.105 3.895 8 H 0.083 0.917 9 N -0.696 5.696 10 C 0.556 3.444 11 O -0.564 6.564 12 C -0.180 4.180 13 C -0.053 4.053 14 C -0.133 4.133 15 C -0.070 4.070 16 C -0.094 4.094 17 O -0.548 6.548 18 Si 0.780 3.220 19 C -0.140 4.140 20 C 0.151 3.849 21 O -0.498 6.498 22 C -0.115 4.115 23 H 0.135 0.865 24 H 0.146 0.854 25 H 0.049 0.951 26 H 0.106 0.894 27 H 0.414 0.586 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.125 0.875 31 H 0.388 0.612 32 H -0.307 1.307 33 H -0.270 1.270 34 H 0.133 0.867 35 H 0.406 0.594 36 H 0.123 0.877 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -1.051 7.340 7.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.083 4.083 3 C -0.054 4.054 4 C -0.119 4.119 5 H 0.117 0.883 6 C -0.194 4.194 7 C 0.000 4.000 8 H 0.101 0.899 9 N -0.349 5.349 10 C 0.345 3.655 11 O -0.443 6.443 12 C -0.183 4.183 13 C -0.071 4.071 14 C -0.151 4.151 15 C -0.071 4.071 16 C -0.202 4.202 17 O -0.356 6.356 18 Si 0.684 3.316 19 C -0.159 4.159 20 C 0.105 3.895 21 O -0.311 6.311 22 C -0.153 4.153 23 H 0.152 0.848 24 H 0.163 0.837 25 H 0.068 0.932 26 H 0.124 0.876 27 H 0.252 0.748 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.143 0.857 31 H 0.237 0.763 32 H -0.236 1.236 33 H -0.196 1.196 34 H 0.151 0.849 35 H 0.266 0.734 36 H 0.141 0.859 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.877 -0.654 7.186 7.455 hybrid contribution -1.167 0.113 -1.483 1.890 sum 0.710 -0.541 5.703 5.772 Atomic orbital electron populations 1.81321 1.15895 1.10904 1.11638 1.30145 0.96166 0.91103 0.90840 1.19727 0.78214 0.99858 1.07646 1.22599 0.97294 0.96865 0.95168 0.88274 1.23697 0.97200 1.01500 0.96963 1.21967 0.98469 0.79020 1.00576 0.89857 1.45485 1.63062 1.06692 1.19661 1.18298 0.77553 0.86518 0.83174 1.90812 1.44738 1.77196 1.31595 1.20475 1.06798 0.92874 0.98178 1.21492 0.94119 0.95749 0.95761 1.21278 1.01370 0.93295 0.99126 1.20476 0.96320 0.96637 0.93652 1.25465 0.97825 0.91759 1.05139 1.86606 1.25684 1.69472 1.53851 0.93916 0.83665 0.77056 0.76943 1.21348 1.00923 0.93747 0.99853 1.18767 0.92112 0.90846 0.87809 1.84716 1.36647 1.83408 1.26289 1.23335 0.94419 1.02400 0.95162 0.84750 0.83680 0.93162 0.87611 0.74762 0.81366 0.82103 0.85710 0.76267 1.23568 1.19631 0.84861 0.73448 0.85878 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.31 18.54 20.01 0.37 -3.94 16 2 C 0.23 -0.38 15.42 89.44 1.38 1.00 16 3 C -0.02 0.20 5.54 28.79 0.16 0.36 16 4 C -0.10 1.23 3.51 -10.17 -0.04 1.19 16 5 H 0.10 -1.21 8.12 -2.39 -0.02 -1.23 16 6 C -0.15 1.05 7.45 31.22 0.23 1.28 16 7 C 0.10 -0.58 4.29 45.52 0.20 -0.38 16 8 H 0.08 -0.01 7.50 -2.38 -0.02 -0.03 16 9 N -0.70 3.03 5.21 -443.19 -2.31 0.71 16 10 C 0.56 2.22 7.76 86.70 0.67 2.89 16 11 O -0.56 -7.28 14.78 16.91 0.25 -7.03 16 12 C -0.18 -0.23 5.89 -20.01 -0.12 -0.35 16 13 C -0.05 0.32 9.54 22.52 0.21 0.54 16 14 C -0.13 0.85 8.64 22.23 0.19 1.04 16 15 C -0.07 0.18 5.36 -19.83 -0.11 0.08 16 16 C -0.09 0.31 2.79 71.24 0.20 0.50 16 17 O -0.55 -0.24 12.83 -148.98 -1.91 -2.16 16 18 Si 0.78 -4.55 29.86 68.60 2.05 -2.50 16 19 C -0.14 -0.23 9.60 22.34 0.21 -0.02 16 20 C 0.15 0.67 6.72 22.84 0.15 0.83 16 21 O -0.50 -3.78 11.58 -68.82 -0.80 -4.58 16 22 C -0.12 1.57 7.38 31.12 0.23 1.80 16 23 H 0.13 -2.29 7.85 -2.39 -0.02 -2.31 16 24 H 0.15 -2.73 8.14 -2.39 -0.02 -2.75 16 25 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.11 -0.89 7.90 -2.38 -0.02 -0.91 16 27 H 0.41 -4.56 6.73 -92.71 -0.62 -5.19 16 28 H 0.17 -2.34 6.40 -2.91 -0.02 -2.36 16 29 H 0.16 -1.85 4.81 -2.91 -0.01 -1.87 16 30 H 0.13 -0.50 7.96 -2.39 -0.02 -0.51 16 31 H 0.39 -2.19 8.70 -74.05 -0.64 -2.84 16 32 H -0.31 -0.95 7.11 99.48 0.71 -0.25 16 33 H -0.27 1.00 7.00 99.48 0.70 1.70 16 34 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 35 H 0.41 0.43 9.06 -74.06 -0.67 -0.24 16 36 H 0.12 -2.05 8.10 -2.39 -0.02 -2.07 16 37 H 0.09 -1.45 8.14 -2.38 -0.02 -1.47 16 Total: 0.00 -31.36 322.41 0.47 -30.89 By element: Atomic # 1 Polarization: -21.40 SS G_CDS: -0.76 Total: -22.16 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 3.58 Total: 10.76 kcal Atomic # 7 Polarization: -1.28 SS G_CDS: -1.94 Total: -3.22 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -2.46 Total: -13.76 kcal Atomic # 14 Polarization: -4.55 SS G_CDS: 2.05 Total: -2.50 kcal Total: -31.36 0.47 -30.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_13422076.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.262 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds