Wall clock time and date at job start Tue Mar 9 2021 13:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37787 * 119.84994 * 2 1 4 4 C 1.39707 * 119.91056 * 179.97438 * 3 2 1 5 5 C 1.47530 * 120.19450 * 180.02562 * 4 3 2 6 6 O 1.21582 * 120.00601 * 179.97438 * 5 4 3 7 7 N 1.34779 * 119.99903 * 359.97438 * 5 4 3 8 8 C 1.46501 * 120.00226 * 179.97438 * 7 5 4 9 9 H 1.08999 * 112.85003 * 25.33068 * 8 7 5 10 10 C 1.53783 * 113.61571 * 156.53149 * 8 7 5 11 11 C 1.53777 * 87.08269 * 89.11524 * 10 8 7 12 12 H 1.09003 * 113.61673 * 270.79845 * 11 10 8 13 13 C 1.52996 * 113.61170 * 139.98143 * 11 10 8 14 14 C 1.47206 * 109.46804 * 175.00121 * 13 11 10 15 15 N 8.80820 * 92.67882 * 24.33972 * 2 1 3 16 16 C 1.53781 * 113.61210 * 254.13776 * 8 7 5 17 17 C 1.40143 * 119.61472 * 0.02562 * 4 3 2 18 18 O 1.35653 * 120.14790 * 179.97438 * 17 4 3 19 19 C 1.38703 * 119.70036 * 359.97438 * 17 4 3 20 20 C 1.50701 * 119.95738 * 180.02562 * 19 17 4 21 21 O 1.42896 * 109.47417 * 74.99766 * 20 19 17 22 22 Si 1.86301 * 109.47149 * 194.99782 * 20 19 17 23 23 C 1.38058 * 120.08670 * 0.27391 * 19 17 4 24 24 H 1.09007 * 109.47273 * 90.00465 * 1 2 3 25 25 H 1.09000 * 109.47410 * 209.99806 * 1 2 3 26 26 H 1.08999 * 109.47646 * 330.00568 * 1 2 3 27 27 H 1.07998 * 120.04500 * 359.95194 * 3 2 1 28 28 H 0.97006 * 119.99816 * 359.97438 * 7 5 4 29 29 H 1.08999 * 113.61254 * 203.67087 * 10 8 7 30 30 H 1.09002 * 113.61218 * 334.48078 * 10 8 7 31 31 H 1.09004 * 109.47442 * 294.99506 * 13 11 10 32 32 H 1.08997 * 109.47655 * 55.00362 * 13 11 10 33 33 H 1.09001 * 113.61886 * 25.43012 * 16 8 7 34 34 H 1.09001 * 113.60857 * 156.33556 * 16 8 7 35 35 H 0.96696 * 113.99906 * 270.01705 * 18 17 4 36 36 H 1.09002 * 109.47060 * 314.99793 * 20 19 17 37 37 H 0.96699 * 114.00604 * 179.97438 * 21 20 19 38 38 H 1.48501 * 110.00188 * 178.68010 * 22 20 19 39 39 H 1.48498 * 110.00005 * 299.99971 * 22 20 19 40 40 H 1.07996 * 119.80833 * 179.70968 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1927 1.1951 0.0000 4 6 3.5898 1.1966 0.0005 5 6 4.3304 2.4725 0.0011 6 8 5.5463 2.4698 0.0021 7 7 3.6593 3.6413 0.0006 8 6 4.3947 4.9083 0.0017 9 1 5.3928 4.8188 -0.4269 10 6 3.5867 6.0901 -0.5601 11 6 3.0788 6.3222 0.8727 12 1 2.1711 5.7671 1.1095 13 6 2.9896 7.7997 1.2594 14 6 2.3842 7.9215 2.5957 15 7 1.9186 8.0165 3.6263 16 6 4.3692 5.6341 1.3573 17 6 4.2836 -0.0211 0.0005 18 8 5.6401 -0.0323 0.0005 19 6 3.5771 -1.2146 0.0005 20 6 4.3173 -2.5273 0.0011 21 8 4.8546 -2.7707 1.3027 22 14 3.1446 -3.9017 -0.4536 23 6 2.1966 -1.2017 -0.0052 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6510 2.1294 -0.0008 28 1 2.6892 3.6435 -0.0005 29 1 4.2071 6.9016 -0.9404 30 1 2.8052 5.7917 -1.2589 31 1 3.9898 8.2329 1.2730 32 1 2.3742 8.3292 0.5322 33 1 4.2180 4.9678 2.2066 34 1 5.2031 6.3212 1.5003 35 1 6.0334 -0.0352 -0.8828 36 1 5.1290 -2.4871 -0.7253 37 1 5.3449 -3.6008 1.3769 38 1 3.8694 -5.1974 -0.4876 39 1 2.0333 -3.9671 0.5292 40 1 1.6510 -2.1337 -0.0099 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_13422088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:11 Heat of formation + Delta-G solvation = -31.873264 kcal Electronic energy + Delta-G solvation = -24239.324033 eV Core-core repulsion = 20600.726709 eV Total energy + Delta-G solvation = -3638.597324 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.84074 -40.75969 -39.28061 -38.06927 -37.75844 -37.46591 -34.76599 -33.19557 -32.78318 -30.85787 -27.54475 -26.79368 -26.60053 -25.66776 -23.89970 -21.84054 -21.64650 -20.28841 -19.50426 -18.74586 -18.62955 -18.12599 -17.60660 -16.83001 -16.63965 -16.13441 -16.04473 -15.84455 -15.57789 -15.42717 -15.07945 -14.88834 -14.43999 -14.40638 -14.09661 -14.03017 -13.76693 -13.66659 -13.32249 -13.12554 -13.07676 -12.98250 -12.66109 -12.41129 -12.32722 -11.90319 -11.83989 -11.72712 -11.44917 -11.09269 -10.92250 -10.48406 -10.23878 -9.97010 -9.49992 -4.97299 -0.35402 0.06808 1.23241 1.56335 1.70047 1.84187 1.89217 1.89935 2.06163 2.54231 3.10046 3.14149 3.32539 3.53373 3.57907 3.65161 3.73780 3.81707 3.93165 3.98630 4.08833 4.15889 4.30916 4.43059 4.48671 4.62310 4.69497 4.78717 4.80824 4.87679 4.90049 4.93851 4.98175 4.98562 5.11822 5.18783 5.21421 5.23392 5.29536 5.40866 5.65524 5.68529 6.47736 6.54474 6.68417 6.74757 7.17914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.060 4.060 4 C -0.182 4.182 5 C 0.558 3.442 6 O -0.563 6.563 7 N -0.697 5.697 8 C 0.105 3.895 9 H 0.086 0.914 10 C -0.112 4.112 11 C -0.100 4.100 12 H 0.097 0.903 13 C -0.015 4.015 14 C 0.233 3.767 15 N -0.519 5.519 16 C -0.159 4.159 17 C 0.164 3.836 18 O -0.490 6.490 19 C -0.120 4.120 20 C -0.088 4.088 21 O -0.558 6.558 22 Si 0.781 3.219 23 C -0.081 4.081 24 H 0.094 0.906 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.162 0.838 28 H 0.413 0.587 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.044 0.956 34 H 0.107 0.893 35 H 0.403 0.597 36 H 0.086 0.914 37 H 0.392 0.608 38 H -0.287 1.287 39 H -0.287 1.287 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 0.821 -10.504 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.079 4.079 4 C -0.185 4.185 5 C 0.346 3.654 6 O -0.442 6.442 7 N -0.350 5.350 8 C 0.000 4.000 9 H 0.104 0.896 10 C -0.150 4.150 11 C -0.120 4.120 12 H 0.115 0.885 13 C -0.054 4.054 14 C -0.083 4.083 15 N -0.198 5.198 16 C -0.197 4.197 17 C 0.117 3.883 18 O -0.303 6.303 19 C -0.121 4.121 20 C -0.195 4.195 21 O -0.368 6.368 22 Si 0.685 3.315 23 C -0.099 4.099 24 H 0.113 0.887 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.180 0.820 28 H 0.251 0.749 29 H 0.144 0.856 30 H 0.114 0.886 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.262 0.738 36 H 0.104 0.896 37 H 0.242 0.758 38 H -0.214 1.214 39 H -0.215 1.215 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.341 0.830 -8.004 9.658 hybrid contribution 1.225 -0.644 0.614 1.514 sum -4.116 0.186 -7.389 8.460 Atomic orbital electron populations 1.20915 0.87968 1.04121 1.04292 1.20112 0.98165 0.91704 0.99604 1.21423 0.91023 0.99775 0.95653 1.20433 0.95070 0.92684 1.10346 1.18248 0.86880 0.84353 0.75884 1.90801 1.14938 1.87888 1.50584 1.45494 1.10654 1.04396 1.74423 1.21979 0.97181 0.82897 0.97919 0.89590 1.23321 0.99959 0.96529 0.95183 1.22592 0.97993 0.93909 0.97469 0.88504 1.19734 1.03576 0.98209 0.83879 1.30120 0.91788 0.91076 0.95308 1.81270 1.12494 1.10949 1.15061 1.23722 0.99423 0.99769 0.96806 1.18530 0.83576 0.90799 0.95356 1.84758 1.15251 1.96061 1.34202 1.19787 0.94144 0.93545 1.04585 1.25073 1.04499 1.02070 0.87835 1.86598 1.74000 1.45590 1.30590 0.94162 0.76627 0.73411 0.87275 1.21363 0.92350 0.99695 0.96508 0.88728 0.90985 0.89927 0.82019 0.74907 0.85638 0.88642 0.84687 0.83508 0.93692 0.87503 0.73770 0.89626 0.75762 1.21417 1.21461 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.96 10.00 71.23 0.71 1.68 16 2 C -0.10 0.26 5.87 -19.90 -0.12 0.15 16 3 C -0.06 0.15 9.18 22.52 0.21 0.36 16 4 C -0.18 -0.79 5.89 -20.01 -0.12 -0.91 16 5 C 0.56 3.53 7.76 86.69 0.67 4.20 16 6 O -0.56 -8.34 14.78 16.94 0.25 -8.09 16 7 N -0.70 1.57 5.21 -443.21 -2.31 -0.74 16 8 C 0.11 -0.43 4.30 45.52 0.20 -0.23 16 9 H 0.09 0.05 7.50 -2.39 -0.02 0.03 16 10 C -0.11 1.44 7.38 31.12 0.23 1.67 16 11 C -0.10 1.08 3.51 -10.18 -0.04 1.04 16 12 H 0.10 -1.00 8.12 -2.39 -0.02 -1.01 16 13 C -0.01 0.18 5.54 28.79 0.16 0.34 16 14 C 0.23 -0.06 15.41 89.46 1.38 1.31 16 15 N -0.52 -5.03 18.53 19.99 0.37 -4.66 16 16 C -0.16 0.72 7.45 31.21 0.23 0.95 16 17 C 0.16 1.20 6.69 22.84 0.15 1.36 16 18 O -0.49 -4.88 10.91 -68.76 -0.75 -5.63 16 19 C -0.12 -0.48 5.30 -19.80 -0.11 -0.59 16 20 C -0.09 -0.15 2.37 71.24 0.17 0.01 16 21 O -0.56 -3.71 12.86 -148.98 -1.92 -5.62 16 22 Si 0.78 -1.98 30.18 68.60 2.07 0.09 16 23 C -0.08 0.00 8.31 22.30 0.19 0.18 16 24 H 0.09 -1.05 8.14 -2.38 -0.02 -1.07 16 25 H 0.07 -0.56 8.08 -2.39 -0.02 -0.58 16 26 H 0.08 -0.84 8.08 -2.39 -0.02 -0.86 16 27 H 0.16 -1.61 6.40 -2.91 -0.02 -1.63 16 28 H 0.41 -3.53 6.73 -92.70 -0.62 -4.16 16 29 H 0.13 -2.05 8.10 -2.39 -0.02 -2.07 16 30 H 0.10 -1.42 8.14 -2.39 -0.02 -1.44 16 31 H 0.14 -2.17 7.85 -2.38 -0.02 -2.19 16 32 H 0.15 -2.65 8.14 -2.39 -0.02 -2.67 16 33 H 0.04 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.11 -0.70 7.90 -2.39 -0.02 -0.72 16 35 H 0.40 0.83 9.06 -74.06 -0.67 0.15 16 36 H 0.09 -0.12 7.83 -2.39 -0.02 -0.14 16 37 H 0.39 -0.67 8.74 -74.06 -0.65 -1.32 16 38 H -0.29 -0.56 7.11 99.48 0.71 0.15 16 39 H -0.29 -0.83 6.75 99.48 0.67 -0.16 16 40 H 0.15 -0.45 4.86 -2.91 -0.01 -0.47 16 Total: 0.00 -34.01 343.11 0.81 -33.20 By element: Atomic # 1 Polarization: -19.26 SS G_CDS: -0.83 Total: -20.09 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 3.92 Total: 11.53 kcal Atomic # 7 Polarization: -3.46 SS G_CDS: -1.94 Total: -5.40 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -2.41 Total: -19.34 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.07 Total: 0.09 kcal Total: -34.01 0.81 -33.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_13422088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.327 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds