Wall clock time and date at job start Tue Mar 9 2021 13:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46807 * 135.59594 * 3 2 1 5 5 H 1.09007 * 112.84668 * 316.19302 * 4 3 2 6 6 C 1.53776 * 113.61582 * 185.00066 * 4 3 2 7 7 C 1.53777 * 87.08159 * 220.01599 * 6 4 3 8 8 H 1.09005 * 113.61754 * 140.06300 * 7 6 4 9 9 N 1.46496 * 113.61609 * 270.88073 * 7 6 4 10 10 C 1.34779 * 120.00573 * 204.99824 * 9 7 6 11 11 O 1.21616 * 119.99352 * 0.02562 * 10 9 7 12 12 C 1.47369 * 120.00404 * 180.02562 * 10 9 7 13 13 C 1.36423 * 127.19303 * 359.97438 * 12 10 9 14 14 O 1.33652 * 108.39919 * 180.26402 * 13 12 10 15 15 C 1.34217 * 110.90450 * 359.58981 * 14 13 12 16 16 C 1.50701 * 125.43642 * 180.17080 * 15 14 13 17 17 O 1.42903 * 109.47002 * 245.28424 * 16 15 14 18 18 Si 1.86304 * 109.47110 * 5.28194 * 16 15 14 19 19 C 1.34179 * 109.12972 * 0.41552 * 15 14 13 20 20 C 1.53780 * 87.08263 * 25.43120 * 7 6 4 21 21 H 1.08995 * 109.47250 * 15.59764 * 3 2 1 22 22 H 1.09000 * 109.47080 * 255.59143 * 3 2 1 23 23 H 1.08998 * 113.62117 * 105.46611 * 6 4 3 24 24 H 1.09004 * 113.69239 * 334.57552 * 6 4 3 25 25 H 0.97010 * 119.99926 * 24.99679 * 9 7 6 26 26 H 1.08002 * 125.79741 * 359.97438 * 13 12 10 27 27 H 1.09003 * 109.47329 * 125.28351 * 16 15 14 28 28 H 0.96698 * 114.00355 * 59.99797 * 17 16 15 29 29 H 1.48500 * 109.99653 * 180.02562 * 18 16 15 30 30 H 1.48500 * 109.99726 * 301.31718 * 18 16 15 31 31 H 1.07994 * 127.02812 * 179.73844 * 19 15 14 32 32 H 1.08997 * 113.61584 * 89.11372 * 20 7 6 33 33 H 1.09000 * 113.61780 * 220.01883 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0315 -1.0094 5 1 2.5751 1.0024 -1.9545 6 6 4.6462 1.0270 -1.1762 7 6 4.5654 2.5615 -1.2359 8 1 5.3723 3.0624 -0.7008 9 7 4.3685 3.0866 -2.5893 10 6 4.7682 4.3377 -2.8916 11 8 5.2928 5.0306 -2.0408 12 6 4.5696 4.8661 -4.2528 13 6 4.0021 4.2217 -5.3130 14 8 4.0176 5.0458 -6.3651 15 6 4.5696 6.2256 -6.0412 16 6 4.7480 7.3931 -6.9773 17 8 6.1422 7.6327 -7.1795 18 14 3.9406 7.0079 -8.6115 19 6 4.9421 6.1978 -4.7525 20 6 3.2642 2.4461 -0.4245 21 1 2.9718 -0.9889 -0.2763 22 1 2.9712 0.2565 0.9953 23 1 4.9826 0.5709 -2.1073 24 1 5.1809 0.6515 -0.3037 25 1 3.9504 2.5337 -3.2680 26 1 3.6114 3.2149 -5.3047 27 1 4.2860 8.2802 -6.5439 28 1 6.6184 6.8838 -7.5635 29 1 4.1101 8.1513 -9.5437 30 1 4.5400 5.7821 -9.1976 31 1 5.4184 6.9913 -4.1959 32 1 3.4198 2.4586 0.6543 33 1 2.4848 3.1357 -0.7487 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_13456056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:23 Heat of formation + Delta-G solvation = 1.313268 kcal Electronic energy + Delta-G solvation = -18773.682775 eV Core-core repulsion = 15575.825905 eV Total energy + Delta-G solvation = -3197.856870 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 263.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.72194 -41.21268 -39.44355 -38.15801 -37.45226 -34.83107 -33.81697 -31.94963 -30.81302 -26.77917 -26.58600 -25.51809 -23.78978 -22.33355 -21.13913 -20.27656 -19.37307 -18.52804 -17.83558 -17.53390 -17.40585 -16.88046 -16.23227 -16.13852 -15.82982 -15.78969 -15.42914 -15.00395 -14.42072 -14.23108 -14.03944 -13.97136 -13.66484 -13.58532 -13.30465 -13.05799 -12.95509 -12.33696 -12.14272 -11.84940 -11.43491 -11.23890 -11.08799 -10.97753 -10.76502 -10.11284 -9.78986 -4.91556 0.26130 0.81115 1.17710 1.53169 1.75390 1.86020 1.91116 1.95485 2.06170 2.24088 3.11545 3.21546 3.48095 3.55182 3.57844 3.74493 3.92557 3.98844 4.00971 4.33070 4.42784 4.46157 4.50746 4.70908 4.80249 4.89145 4.90303 4.96275 4.99820 5.11863 5.14840 5.22479 5.29703 5.66537 5.82872 6.34656 6.48897 6.70854 7.16815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.233 3.767 3 C -0.015 4.015 4 C -0.098 4.098 5 H 0.101 0.899 6 C -0.115 4.115 7 C 0.103 3.897 8 H 0.083 0.917 9 N -0.693 5.693 10 C 0.587 3.413 11 O -0.587 6.587 12 C -0.270 4.270 13 C 0.066 3.934 14 O -0.166 6.166 15 C -0.051 4.051 16 C -0.046 4.046 17 O -0.540 6.540 18 Si 0.790 3.210 19 C -0.151 4.151 20 C -0.156 4.156 21 H 0.145 0.855 22 H 0.134 0.866 23 H 0.094 0.906 24 H 0.122 0.878 25 H 0.416 0.584 26 H 0.263 0.737 27 H 0.147 0.853 28 H 0.391 0.609 29 H -0.289 1.289 30 H -0.284 1.284 31 H 0.144 0.856 32 H 0.105 0.895 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 -6.260 -2.637 6.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.083 4.083 3 C -0.054 4.054 4 C -0.118 4.118 5 H 0.120 0.880 6 C -0.153 4.153 7 C -0.002 4.002 8 H 0.101 0.899 9 N -0.345 5.345 10 C 0.377 3.623 11 O -0.468 6.468 12 C -0.275 4.275 13 C -0.004 4.004 14 O -0.061 6.061 15 C -0.099 4.099 16 C -0.154 4.154 17 O -0.348 6.348 18 Si 0.693 3.307 19 C -0.171 4.171 20 C -0.194 4.194 21 H 0.163 0.837 22 H 0.152 0.848 23 H 0.113 0.887 24 H 0.141 0.859 25 H 0.254 0.746 26 H 0.279 0.721 27 H 0.165 0.835 28 H 0.241 0.759 29 H -0.216 1.216 30 H -0.210 1.210 31 H 0.161 0.839 32 H 0.124 0.876 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.389 -5.368 -2.913 6.120 hybrid contribution 1.400 -0.050 0.296 1.432 sum 1.011 -5.419 -2.617 6.102 Atomic orbital electron populations 1.81325 1.15879 1.11356 1.11124 1.30130 0.96149 0.90913 0.91080 1.19720 0.78248 1.03896 1.03583 1.22551 0.97208 0.93084 0.98975 0.88035 1.23335 0.94520 0.91882 1.05542 1.21989 0.98605 0.96923 0.82665 0.89910 1.45360 1.61759 1.13818 1.13532 1.17505 0.76956 0.81736 0.86153 1.90791 1.45751 1.59441 1.50794 1.21501 1.13045 0.97416 0.95500 1.25322 0.96234 0.96516 0.82326 1.83725 1.62878 1.21773 1.37734 1.22683 1.03550 0.87773 0.95897 1.24712 0.87164 0.95498 1.08011 1.86651 1.19483 1.43889 1.84795 0.93449 0.89005 0.76603 0.71658 1.22576 1.03034 0.97195 0.94295 1.23656 0.97148 0.97265 1.01355 0.83705 0.84811 0.88741 0.85946 0.74631 0.72099 0.83544 0.75924 1.21555 1.21012 0.83861 0.87630 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.19 18.54 20.01 0.37 -3.82 16 2 C 0.23 -0.43 15.42 89.44 1.38 0.94 16 3 C -0.02 0.21 5.54 28.79 0.16 0.37 16 4 C -0.10 1.25 3.49 -10.27 -0.04 1.22 16 5 H 0.10 -1.32 8.12 -2.38 -0.02 -1.34 16 6 C -0.11 1.60 7.39 31.12 0.23 1.83 16 7 C 0.10 -0.57 4.32 45.52 0.20 -0.37 16 8 H 0.08 0.01 7.46 -2.38 -0.02 0.00 16 9 N -0.69 3.29 5.25 -443.36 -2.33 0.96 16 10 C 0.59 2.73 7.81 86.65 0.68 3.40 16 11 O -0.59 -8.88 16.58 -4.08 -0.07 -8.95 16 12 C -0.27 -0.43 6.31 -18.99 -0.12 -0.55 16 13 C 0.07 -0.43 11.61 67.40 0.78 0.35 16 14 O -0.17 0.49 8.90 4.44 0.04 0.53 16 15 C -0.05 -0.01 6.18 24.76 0.15 0.14 16 16 C -0.05 0.07 2.97 71.24 0.21 0.29 16 17 O -0.54 -0.86 12.88 -148.98 -1.92 -2.78 16 18 Si 0.79 -2.80 32.09 68.60 2.20 -0.60 16 19 C -0.15 -0.71 10.90 23.65 0.26 -0.46 16 20 C -0.16 1.06 7.43 31.12 0.23 1.30 16 21 H 0.15 -2.75 8.14 -2.39 -0.02 -2.77 16 22 H 0.13 -2.29 7.84 -2.39 -0.02 -2.31 16 23 H 0.09 -1.49 8.14 -2.39 -0.02 -1.51 16 24 H 0.12 -2.05 8.10 -2.38 -0.02 -2.07 16 25 H 0.42 -5.23 7.67 -92.70 -0.71 -5.94 16 26 H 0.26 -4.73 7.47 -2.91 -0.02 -4.76 16 27 H 0.15 -0.58 7.96 -2.39 -0.02 -0.60 16 28 H 0.39 -1.69 8.70 -74.06 -0.64 -2.33 16 29 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 30 H -0.28 -0.33 7.11 99.48 0.71 0.38 16 31 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 32 H 0.11 -0.88 7.90 -2.39 -0.02 -0.90 16 33 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: 0.00 -31.83 301.55 2.26 -29.57 By element: Atomic # 1 Polarization: -23.19 SS G_CDS: -0.16 Total: -23.35 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.12 Total: 8.44 kcal Atomic # 7 Polarization: -0.90 SS G_CDS: -1.96 Total: -2.86 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.95 Total: -11.21 kcal Atomic # 14 Polarization: -2.80 SS G_CDS: 2.20 Total: -0.60 kcal Total: -31.83 2.26 -29.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_13456056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.887 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds