Wall clock time and date at job start Tue Mar 9 2021 13:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47292 * 29.22191 * 3 2 1 5 5 H 1.08997 * 112.84820 * 43.80104 * 4 3 2 6 6 C 1.53776 * 113.61284 * 272.49840 * 4 3 2 7 7 C 1.53787 * 87.07960 * 220.01725 * 6 4 3 8 8 H 1.09002 * 113.68716 * 139.98928 * 7 6 4 9 9 N 1.46493 * 113.61186 * 270.88452 * 7 6 4 10 10 C 1.34784 * 119.99864 * 252.49436 * 9 7 6 11 11 O 1.21283 * 119.99649 * 359.72839 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72721 * 10 9 7 13 13 C 1.53001 * 109.47168 * 179.97438 * 12 10 9 14 14 O 1.42895 * 109.47489 * 179.97438 * 13 12 10 15 15 C 1.35894 * 117.00251 * 180.02562 * 14 13 12 16 16 C 1.38719 * 120.05558 * 179.72897 * 15 14 13 17 17 C 1.38164 * 119.94305 * 179.71884 * 16 15 14 18 18 C 1.50698 * 119.97581 * 180.27646 * 17 16 15 19 19 O 1.42904 * 109.46625 * 300.25658 * 18 17 16 20 20 Si 1.86295 * 109.47529 * 180.25766 * 18 17 16 21 21 C 1.38256 * 120.05559 * 0.53182 * 17 16 15 22 22 C 1.38285 * 120.10822 * 359.76633 * 21 17 16 23 23 C 1.38125 * 120.05768 * 359.95338 * 22 21 17 24 24 C 1.53775 * 113.61380 * 174.99913 * 4 3 2 25 25 H 1.08998 * 109.47227 * 269.21989 * 3 2 1 26 26 H 1.09006 * 109.46652 * 149.21937 * 3 2 1 27 27 H 1.08997 * 113.61894 * 105.47212 * 6 4 3 28 28 H 1.09004 * 113.61608 * 334.55978 * 6 4 3 29 29 H 0.97000 * 120.00740 * 72.22129 * 9 7 6 30 30 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 31 31 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 32 32 H 1.09000 * 109.47339 * 299.99895 * 13 12 10 33 33 H 1.09002 * 109.46926 * 60.00175 * 13 12 10 34 34 H 1.08002 * 120.02808 * 359.97438 * 16 15 14 35 35 H 1.08998 * 109.47316 * 60.25068 * 18 17 16 36 36 H 0.96705 * 113.99814 * 180.02562 * 19 18 17 37 37 H 1.48503 * 110.00068 * 59.99596 * 20 18 17 38 38 H 1.48496 * 110.00139 * 181.31590 * 20 18 17 39 39 H 1.07992 * 119.94071 * 179.74273 * 21 17 16 40 40 H 1.08000 * 119.97280 * 179.97438 * 22 21 17 41 41 H 1.08005 * 120.02686 * 180.02562 * 23 22 21 42 42 H 1.08999 * 113.61628 * 25.42764 * 24 4 3 43 43 H 1.09006 * 113.61284 * 254.52718 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2581 -0.7042 5 1 2.5763 -1.4780 -1.6238 6 6 3.2666 -2.4699 0.2308 7 6 4.5681 -2.7926 -0.5222 8 1 5.3753 -3.1349 0.1253 9 7 4.3718 -3.6540 -1.6908 10 6 4.7728 -4.9403 -1.6548 11 8 5.3007 -5.3831 -0.6567 12 6 4.5653 -5.8280 -2.8546 13 6 5.1059 -7.2273 -2.5533 14 8 4.9087 -8.0694 -3.6908 15 6 5.3359 -9.3553 -3.5881 16 6 5.1709 -10.2294 -4.6525 17 6 5.6113 -11.5347 -4.5476 18 6 5.4380 -12.4832 -5.7057 19 8 4.0487 -12.6065 -6.0166 20 14 6.1225 -14.1543 -5.2478 21 6 6.2063 -11.9730 -3.3790 22 6 6.3663 -11.1052 -2.3143 23 6 5.9329 -9.7977 -2.4163 24 6 4.6473 -1.2959 -0.8665 25 1 2.9714 0.0148 1.0275 26 1 2.9709 0.8838 -0.5260 27 1 2.4880 -3.2211 0.0986 28 1 3.4221 -2.1992 1.2752 29 1 3.9496 -3.2998 -2.4891 30 1 3.5009 -5.8904 -3.0808 31 1 5.0950 -5.4110 -3.7111 32 1 6.1704 -7.1647 -2.3275 33 1 4.5766 -7.6446 -1.6967 34 1 4.7022 -9.8887 -5.5639 35 1 5.9718 -12.0976 -6.5743 36 1 3.8621 -13.2035 -6.7541 37 1 5.4029 -14.6911 -4.0648 38 1 5.9864 -15.0901 -6.3927 39 1 6.5461 -12.9948 -3.2976 40 1 6.8310 -11.4500 -1.4024 41 1 6.0585 -9.1202 -1.5846 42 1 5.1802 -0.7042 -0.1222 43 1 4.9833 -1.0993 -1.8847 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_4549614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:48 Heat of formation + Delta-G solvation = -29.738267 kcal Electronic energy + Delta-G solvation = -24622.441961 eV Core-core repulsion = 20828.399598 eV Total energy + Delta-G solvation = -3794.042363 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.51335 -41.13564 -39.72307 -39.00705 -37.50818 -37.43630 -34.66936 -33.27471 -32.60657 -31.20899 -30.58685 -27.07906 -26.59465 -25.75327 -24.01246 -23.66479 -22.12133 -21.46913 -20.21839 -19.24398 -18.62417 -18.56073 -17.86917 -17.49647 -17.27072 -17.08767 -16.83206 -16.14436 -15.99050 -15.81627 -15.69388 -15.56840 -14.95071 -14.58717 -14.52524 -14.32121 -14.17444 -14.03421 -13.93061 -13.64519 -13.45663 -13.33224 -13.10340 -12.92902 -12.91026 -12.36201 -12.34262 -12.02757 -11.85883 -11.81988 -11.69103 -11.43594 -11.09702 -11.05394 -10.57772 -10.05979 -9.90576 -9.28161 -4.91463 0.18661 0.38203 1.28241 1.50777 1.61030 1.71154 1.83044 1.87881 1.95883 2.49261 2.61957 3.09123 3.35838 3.54839 3.57331 3.73068 3.75015 3.83851 3.86648 3.92450 3.99526 4.00777 4.10142 4.22861 4.25261 4.34622 4.43334 4.48038 4.61706 4.66563 4.69729 4.75227 4.79036 4.89152 4.95412 4.96978 4.98061 5.12953 5.21041 5.23881 5.30206 5.36799 5.44428 5.66759 5.68378 6.31814 6.47280 6.57703 6.67711 7.16964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.233 3.767 3 C -0.016 4.016 4 C -0.101 4.101 5 H 0.097 0.903 6 C -0.156 4.156 7 C 0.104 3.896 8 H 0.087 0.913 9 N -0.700 5.700 10 C 0.522 3.478 11 O -0.582 6.582 12 C -0.134 4.134 13 C 0.073 3.927 14 O -0.324 6.324 15 C 0.116 3.884 16 C -0.142 4.142 17 C -0.048 4.048 18 C -0.090 4.090 19 O -0.559 6.559 20 Si 0.772 3.228 21 C -0.159 4.159 22 C -0.075 4.075 23 C -0.211 4.211 24 C -0.116 4.116 25 H 0.136 0.864 26 H 0.145 0.855 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.418 0.582 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.396 0.604 37 H -0.299 1.299 38 H -0.284 1.284 39 H 0.146 0.854 40 H 0.155 0.845 41 H 0.139 0.861 42 H 0.122 0.878 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 3.628 -2.493 8.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.083 4.083 3 C -0.055 4.055 4 C -0.121 4.121 5 H 0.115 0.885 6 C -0.195 4.195 7 C -0.001 4.001 8 H 0.105 0.895 9 N -0.352 5.352 10 C 0.309 3.691 11 O -0.462 6.462 12 C -0.174 4.174 13 C -0.002 4.002 14 O -0.238 6.238 15 C 0.071 3.929 16 C -0.161 4.161 17 C -0.048 4.048 18 C -0.198 4.198 19 O -0.369 6.369 20 Si 0.677 3.323 21 C -0.177 4.177 22 C -0.093 4.093 23 C -0.230 4.230 24 C -0.154 4.154 25 H 0.154 0.846 26 H 0.162 0.838 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.255 0.745 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.115 0.885 36 H 0.246 0.754 37 H -0.227 1.227 38 H -0.211 1.211 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.823 3.028 -1.364 6.704 hybrid contribution -1.236 -0.042 -0.795 1.470 sum 4.588 2.986 -2.159 5.884 Atomic orbital electron populations 1.81323 1.15918 1.11178 1.11378 1.30156 0.96179 0.90954 0.90979 1.19740 0.78193 1.01443 1.06125 1.22548 0.97390 0.93048 0.99095 0.88513 1.23656 0.97341 0.98027 1.00441 1.21964 0.98423 0.91759 0.87955 0.89472 1.45573 1.61537 1.09977 1.18079 1.20567 0.76936 0.82974 0.88584 1.90737 1.44928 1.74933 1.35605 1.21444 1.06050 0.92157 0.97712 1.22454 1.01625 0.89394 0.86728 1.85944 1.77905 1.19168 1.40832 1.19122 0.95111 0.83937 0.94711 1.20318 1.04412 0.92648 0.98716 1.19312 0.97477 0.93053 0.94973 1.25119 0.86333 1.09208 0.99157 1.86552 1.23250 1.69749 1.57361 0.94007 0.89179 0.72065 0.77029 1.21133 1.02837 1.00768 0.92935 1.21239 0.96747 0.92049 0.99219 1.21555 1.04861 0.98697 0.97880 1.23331 0.94298 0.92876 1.04883 0.84637 0.83778 0.93111 0.87583 0.74495 0.86073 0.85278 0.91231 0.92045 0.85405 0.88471 0.75379 1.22719 1.21085 0.83636 0.82695 0.84306 0.85929 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.72 18.54 20.01 0.37 -4.35 16 2 C 0.23 -0.22 15.42 89.44 1.38 1.16 16 3 C -0.02 0.20 5.54 28.79 0.16 0.36 16 4 C -0.10 1.20 3.49 -10.27 -0.04 1.17 16 5 H 0.10 -1.09 8.12 -2.39 -0.02 -1.11 16 6 C -0.16 1.10 7.43 31.12 0.23 1.33 16 7 C 0.10 -0.68 4.33 45.52 0.20 -0.48 16 8 H 0.09 -0.16 7.46 -2.39 -0.02 -0.17 16 9 N -0.70 4.33 5.26 -440.03 -2.32 2.02 16 10 C 0.52 -0.07 7.83 87.65 0.69 0.62 16 11 O -0.58 -5.19 15.58 -3.04 -0.05 -5.24 16 12 C -0.13 0.52 6.07 29.85 0.18 0.70 16 13 C 0.07 0.14 4.03 71.98 0.29 0.43 16 14 O -0.32 -1.84 10.14 -92.36 -0.94 -2.78 16 15 C 0.12 0.82 6.69 22.51 0.15 0.97 16 16 C -0.14 -1.02 9.55 22.37 0.21 -0.81 16 17 C -0.05 -0.23 5.42 -19.88 -0.11 -0.34 16 18 C -0.09 -0.09 2.81 71.24 0.20 0.11 16 19 O -0.56 -2.19 12.74 -148.98 -1.90 -4.09 16 20 Si 0.77 -1.04 29.79 68.60 2.04 1.00 16 21 C -0.16 -0.41 8.67 22.29 0.19 -0.21 16 22 C -0.07 -0.16 10.04 22.25 0.22 0.06 16 23 C -0.21 -0.97 9.04 22.37 0.20 -0.77 16 24 C -0.12 1.59 7.39 31.12 0.23 1.82 16 25 H 0.14 -2.27 7.84 -2.39 -0.02 -2.29 16 26 H 0.14 -2.61 8.14 -2.38 -0.02 -2.63 16 27 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.11 -0.92 7.90 -2.38 -0.02 -0.94 16 29 H 0.42 -5.00 8.70 -92.71 -0.81 -5.80 16 30 H 0.12 -0.79 8.14 -2.39 -0.02 -0.81 16 31 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 32 H 0.07 0.17 7.62 -2.39 -0.02 0.15 16 33 H 0.06 0.23 7.62 -2.39 -0.02 0.22 16 34 H 0.13 0.89 8.06 -2.91 -0.02 0.86 16 35 H 0.10 -0.30 7.96 -2.39 -0.02 -0.31 16 36 H 0.40 -1.82 8.74 -74.05 -0.65 -2.47 16 37 H -0.30 -1.83 7.11 99.48 0.71 -1.12 16 38 H -0.28 -0.65 7.11 99.48 0.71 0.06 16 39 H 0.15 -0.28 4.87 -2.91 -0.01 -0.29 16 40 H 0.16 -0.51 8.06 -2.91 -0.02 -0.54 16 41 H 0.14 0.35 6.30 -2.91 -0.02 0.33 16 42 H 0.12 -2.05 8.10 -2.39 -0.02 -2.07 16 43 H 0.09 -1.37 8.14 -2.38 -0.02 -1.39 16 Total: 0.00 -30.08 368.05 1.24 -28.84 By element: Atomic # 1 Polarization: -21.14 SS G_CDS: -0.37 Total: -21.51 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 4.39 Total: 6.11 kcal Atomic # 7 Polarization: -0.39 SS G_CDS: -1.94 Total: -2.33 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -2.88 Total: -12.11 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.04 Total: 1.00 kcal Total: -30.08 1.24 -28.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_4549614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.899 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds