Wall clock time and date at job start Tue Mar 9 2021 13:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47085 * 229.95520 * 3 2 1 5 5 H 1.09004 * 112.84867 * 316.19118 * 4 3 2 6 6 C 1.53779 * 113.61378 * 185.00424 * 4 3 2 7 7 C 1.53779 * 87.07874 * 219.93067 * 6 4 3 8 8 H 1.09008 * 113.61423 * 140.06712 * 7 6 4 9 9 N 1.46504 * 113.61303 * 270.87881 * 7 6 4 10 10 C 1.34775 * 119.99912 * 204.99564 * 9 7 6 11 11 O 1.21284 * 120.00030 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00095 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.47504 * 180.02562 * 12 10 9 14 14 C 1.35892 * 116.99992 * 180.02562 * 13 12 10 15 15 C 1.38714 * 120.05889 * 359.97438 * 14 13 12 16 16 C 1.38161 * 119.94312 * 180.27992 * 15 14 13 17 17 C 1.38250 * 120.05761 * 359.46537 * 16 15 14 18 18 C 1.50697 * 119.94428 * 180.25787 * 17 16 15 19 19 O 1.42898 * 109.47027 * 120.29695 * 18 17 16 20 20 Si 1.86297 * 109.47241 * 0.29614 * 18 17 16 21 21 C 1.38282 * 120.10863 * 0.55702 * 17 16 15 22 22 C 1.38123 * 120.05938 * 359.69766 * 21 17 16 23 23 N 1.48002 * 120.02982 * 180.02562 * 22 21 17 24 24 O 1.21798 * 119.99928 * 0.02562 * 23 22 21 25 25 O 1.21805 * 119.99921 * 180.02562 * 23 22 21 26 26 C 1.53772 * 113.69533 * 87.46380 * 4 3 2 27 27 H 1.08998 * 109.46927 * 109.95317 * 3 2 1 28 28 H 1.09003 * 109.47563 * 349.95351 * 3 2 1 29 29 H 1.09003 * 113.62042 * 105.38019 * 6 4 3 30 30 H 1.09002 * 113.69080 * 334.48699 * 6 4 3 31 31 H 0.96995 * 119.99773 * 25.00854 * 9 7 6 32 32 H 1.08998 * 109.46781 * 60.00398 * 12 10 9 33 33 H 1.08998 * 109.47079 * 300.00903 * 12 10 9 34 34 H 1.08002 * 120.02359 * 359.97438 * 15 14 13 35 35 H 1.07998 * 119.97295 * 179.74769 * 16 15 14 36 36 H 1.09005 * 109.47323 * 240.29972 * 18 17 16 37 37 H 0.96694 * 114.00527 * 299.99623 * 19 18 17 38 38 H 1.48504 * 109.99913 * 58.68210 * 20 18 17 39 39 H 1.48506 * 110.00258 * 179.97438 * 20 18 17 40 40 H 1.08006 * 119.97098 * 179.72383 * 21 17 16 41 41 H 1.09007 * 113.61404 * 25.44532 * 26 4 3 42 42 H 1.09003 * 113.61848 * 254.54134 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9290 1.1043 5 1 2.5748 1.8733 1.1474 6 6 4.6462 1.0964 1.1116 7 6 4.5660 1.0415 2.6464 8 1 5.3734 0.4710 3.1057 9 7 4.3687 2.3519 3.2709 10 6 4.7687 2.5602 4.5410 11 8 5.2925 1.6629 5.1667 12 6 4.5653 3.9080 5.1837 13 8 5.0683 3.8790 6.5210 14 6 4.9609 5.0236 7.2455 15 6 4.3838 6.1516 6.6810 16 6 4.2810 7.3158 7.4179 17 6 4.7427 7.3539 8.7204 18 6 4.6241 8.6234 9.5238 19 8 3.8335 8.3778 10.6885 20 14 3.8105 9.9404 8.4873 21 6 5.3188 6.2308 9.2853 22 6 5.4287 5.0660 8.5512 23 7 6.0448 3.8643 9.1566 24 8 6.4549 3.9020 10.3029 25 8 6.1419 2.8375 8.5085 26 6 3.2651 0.2404 2.4713 27 1 2.9711 0.3515 -0.9660 28 1 2.9719 -1.0111 0.1793 29 1 4.9820 2.0591 0.7261 30 1 5.1811 0.2545 0.6720 31 1 3.9500 3.0696 2.7705 32 1 3.5017 4.1457 5.2003 33 1 5.0984 4.6674 4.6117 34 1 4.0196 6.1213 5.6647 35 1 3.8355 8.1956 6.9775 36 1 5.6173 8.9584 9.8227 37 1 2.9349 8.0760 10.4976 38 1 2.4681 9.4829 8.0468 39 1 3.6870 11.1974 9.2684 40 1 5.6828 6.2644 10.3016 41 1 3.4212 -0.8363 2.4033 42 1 2.4859 0.5119 3.1835 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_4549638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:10 Heat of formation + Delta-G solvation = -17.909866 kcal Electronic energy + Delta-G solvation = -29447.657378 eV Core-core repulsion = 24978.649117 eV Total energy + Delta-G solvation = -4469.008261 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.29175 -41.81606 -41.15995 -39.93998 -39.10850 -37.62321 -37.51600 -37.40651 -34.70848 -33.47909 -32.27456 -31.34574 -29.53944 -27.82120 -26.59825 -26.57295 -24.64136 -23.85060 -22.84822 -21.95961 -20.56552 -20.23675 -19.77663 -19.14409 -18.80331 -18.63738 -18.33326 -18.09466 -17.57611 -17.22709 -16.80531 -16.38422 -16.18156 -15.97424 -15.92717 -15.60580 -15.43405 -15.19016 -14.77387 -14.47209 -14.03748 -14.02825 -13.94386 -13.69511 -13.60432 -13.31027 -13.21457 -13.05849 -12.70393 -12.39212 -12.38946 -12.31021 -12.26952 -12.20881 -11.84590 -11.80735 -11.42365 -11.07998 -11.00469 -10.83823 -10.75802 -10.08088 -9.79662 -4.92211 -1.31163 -0.24224 0.15913 0.35665 1.21969 1.26956 1.46808 1.60593 1.85451 1.90361 2.02080 2.05023 2.34774 3.11139 3.11341 3.25125 3.35021 3.44873 3.58399 3.63421 3.71556 3.74453 3.76824 3.91261 3.94626 4.01723 4.05469 4.29384 4.39512 4.46026 4.55745 4.63948 4.71371 4.80583 4.84097 4.89997 4.96295 5.00174 5.07621 5.14415 5.19434 5.23102 5.30691 5.65739 5.77667 6.41992 6.44286 6.48309 6.70129 7.19462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.234 3.766 3 C -0.017 4.017 4 C -0.097 4.097 5 H 0.104 0.896 6 C -0.114 4.114 7 C 0.105 3.895 8 H 0.080 0.920 9 N -0.692 5.692 10 C 0.509 3.491 11 O -0.566 6.566 12 C 0.023 3.977 13 O -0.292 6.292 14 C 0.194 3.806 15 C -0.189 4.189 16 C -0.004 4.004 17 C -0.148 4.148 18 C -0.091 4.091 19 O -0.551 6.551 20 Si 0.791 3.209 21 C -0.003 4.003 22 C -0.105 4.105 23 N 0.034 4.966 24 O -0.204 6.204 25 O -0.173 6.173 26 C -0.158 4.158 27 H 0.146 0.854 28 H 0.132 0.868 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.422 0.578 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.207 0.793 35 H 0.189 0.811 36 H 0.128 0.872 37 H 0.389 0.611 38 H -0.262 1.262 39 H -0.310 1.310 40 H 0.150 0.850 41 H 0.101 0.899 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 9.460 -12.642 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.082 4.082 3 C -0.056 4.056 4 C -0.117 4.117 5 H 0.122 0.878 6 C -0.152 4.152 7 C 0.000 4.000 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.294 3.706 11 O -0.443 6.443 12 C -0.053 4.053 13 O -0.202 6.202 14 C 0.144 3.856 15 C -0.207 4.207 16 C -0.021 4.021 17 C -0.149 4.149 18 C -0.198 4.198 19 O -0.359 6.359 20 Si 0.693 3.307 21 C -0.022 4.022 22 C -0.190 4.190 23 N 0.544 4.456 24 O -0.411 6.411 25 O -0.387 6.387 26 C -0.197 4.197 27 H 0.163 0.837 28 H 0.150 0.850 29 H 0.116 0.884 30 H 0.137 0.863 31 H 0.261 0.739 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.224 0.776 35 H 0.205 0.795 36 H 0.145 0.855 37 H 0.238 0.762 38 H -0.188 1.188 39 H -0.238 1.238 40 H 0.168 0.832 41 H 0.120 0.880 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.530 9.853 -12.192 15.750 hybrid contribution -0.361 -1.199 1.509 1.960 sum -1.891 8.654 -10.683 13.878 Atomic orbital electron populations 1.81327 1.15909 1.11223 1.11344 1.30139 0.96150 0.91030 0.90894 1.19735 0.78228 1.04339 1.03302 1.22554 0.97309 0.99104 0.92739 0.87782 1.23323 0.94382 1.05646 0.91830 1.21948 0.98367 0.84114 0.95584 0.90151 1.45324 1.61978 1.14908 1.12390 1.20501 0.78031 0.89508 0.82527 1.90853 1.43553 1.46350 1.63534 1.23140 1.04257 0.97060 0.80876 1.86470 1.75947 1.31063 1.26715 1.18969 0.91131 0.87640 0.87845 1.21813 1.04443 0.90031 1.04431 1.21712 0.90565 0.98518 0.91342 1.20376 1.02528 0.95622 0.96411 1.25521 1.02417 0.99389 0.92453 1.86631 1.29290 1.88701 1.31326 0.94186 0.80930 0.72937 0.82619 1.20842 0.92566 0.88703 1.00136 1.20867 1.15518 0.87719 0.94909 1.43906 0.98370 1.03001 1.00323 1.94504 1.52017 1.91106 1.03482 1.94678 1.61119 1.21040 1.61839 1.23660 0.97331 1.01081 0.97580 0.83656 0.85001 0.88394 0.86266 0.73933 0.84241 0.83424 0.77640 0.79466 0.85469 0.76170 1.18783 1.23840 0.83233 0.88038 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -3.88 18.54 20.00 0.37 -3.51 16 2 C 0.23 -0.60 15.42 89.44 1.38 0.78 16 3 C -0.02 0.24 5.54 28.79 0.16 0.40 16 4 C -0.10 1.37 3.49 -10.27 -0.04 1.34 16 5 H 0.10 -1.55 8.12 -2.39 -0.02 -1.57 16 6 C -0.11 1.77 7.39 31.12 0.23 2.00 16 7 C 0.11 -0.79 4.32 45.51 0.20 -0.59 16 8 H 0.08 -0.08 7.46 -2.38 -0.02 -0.09 16 9 N -0.69 6.34 5.26 -440.03 -2.32 4.02 16 10 C 0.51 -0.42 7.91 87.66 0.69 0.27 16 11 O -0.57 -7.54 16.10 15.99 0.26 -7.28 16 12 C 0.02 -0.21 5.22 71.24 0.37 0.17 16 13 O -0.29 -1.02 7.68 -63.32 -0.49 -1.51 16 14 C 0.19 -0.05 6.67 22.51 0.15 0.10 16 15 C -0.19 2.20 9.04 22.37 0.20 2.41 16 16 C 0.00 0.05 8.66 22.25 0.19 0.24 16 17 C -0.15 0.93 5.39 -19.85 -0.11 0.82 16 18 C -0.09 0.60 2.82 71.23 0.20 0.81 16 19 O -0.55 0.85 12.77 -148.98 -1.90 -1.05 16 20 Si 0.79 -8.21 29.78 68.60 2.04 -6.17 16 21 C 0.00 0.00 9.11 22.25 0.20 0.20 16 22 C -0.10 -0.68 6.87 36.48 0.25 -0.43 16 23 N 0.03 0.56 4.45 -46.24 -0.21 0.35 16 24 O -0.20 -3.77 18.45 18.89 0.35 -3.42 16 25 O -0.17 -3.67 17.24 25.60 0.44 -3.23 16 26 C -0.16 1.26 7.43 31.12 0.23 1.49 16 27 H 0.15 -2.88 8.14 -2.39 -0.02 -2.90 16 28 H 0.13 -2.30 7.85 -2.39 -0.02 -2.32 16 29 H 0.10 -1.76 8.14 -2.39 -0.02 -1.78 16 30 H 0.12 -2.10 8.10 -2.39 -0.02 -2.11 16 31 H 0.42 -7.46 8.70 -92.71 -0.81 -8.27 16 32 H 0.14 -2.34 7.66 -2.39 -0.02 -2.36 16 33 H 0.15 -2.67 7.66 -2.39 -0.02 -2.69 16 34 H 0.21 -4.51 6.30 -2.91 -0.02 -4.52 16 35 H 0.19 -3.74 4.87 -2.91 -0.01 -3.75 16 36 H 0.13 -0.93 7.96 -2.38 -0.02 -0.95 16 37 H 0.39 -3.03 8.70 -74.06 -0.64 -3.67 16 38 H -0.26 2.37 7.11 99.48 0.71 3.08 16 39 H -0.31 0.05 7.11 99.48 0.71 0.76 16 40 H 0.15 0.52 7.61 -2.91 -0.02 0.50 16 41 H 0.10 -0.87 7.90 -2.38 -0.02 -0.89 16 42 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -48.09 373.10 2.57 -45.52 By element: Atomic # 1 Polarization: -33.44 SS G_CDS: -0.30 Total: -33.74 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 4.32 Total: 10.00 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -2.15 Total: 0.87 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.34 Total: -16.49 kcal Atomic # 14 Polarization: -8.21 SS G_CDS: 2.04 Total: -6.17 kcal Total: -48.09 2.57 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_4549638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.614 kcal (2) G-P(sol) polarization free energy of solvation -48.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds