Wall clock time and date at job start Tue Mar 9 2021 13:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47093 * 42.64174 * 3 2 1 5 5 H 1.08997 * 112.85098 * 314.67162 * 4 3 2 6 6 C 1.53774 * 113.61380 * 183.47094 * 4 3 2 7 7 C 1.53783 * 87.07931 * 220.02150 * 6 4 3 8 8 H 1.09001 * 113.61468 * 140.06956 * 7 6 4 9 9 N 1.46497 * 113.61303 * 270.88217 * 7 6 4 10 10 C 1.34781 * 119.99968 * 205.00178 * 9 7 6 11 11 O 1.21546 * 120.00243 * 359.97438 * 10 9 7 12 12 C 1.47851 * 119.99861 * 180.02562 * 10 9 7 13 13 C 1.39553 * 120.14093 * 179.97438 * 12 10 9 14 14 C 1.50704 * 120.07730 * 359.95355 * 13 12 10 15 15 O 1.42899 * 109.47090 * 180.02562 * 14 13 12 16 16 C 1.35901 * 116.99539 * 180.02562 * 15 14 13 17 17 C 1.38714 * 120.05096 * 179.72526 * 16 15 14 18 18 C 1.38165 * 119.94139 * 179.75999 * 17 16 15 19 19 C 1.50706 * 119.97301 * 180.23026 * 18 17 16 20 20 O 1.42898 * 109.46875 * 65.25645 * 19 18 17 21 21 Si 1.86303 * 109.47162 * 185.25743 * 19 18 17 22 22 C 1.38245 * 120.05684 * 0.48844 * 18 17 16 23 23 C 1.38290 * 120.10984 * 359.76356 * 22 18 17 24 24 C 1.38126 * 120.05403 * 0.02562 * 23 22 18 25 25 C 1.37979 * 119.85080 * 179.97438 * 13 12 10 26 26 C 1.38340 * 120.14746 * 359.97438 * 25 13 12 27 27 C 1.38386 * 120.28888 * 0.02562 * 26 25 13 28 28 C 1.37939 * 120.14403 * 359.74037 * 27 26 25 29 29 C 1.53785 * 113.61139 * 85.86300 * 4 3 2 30 30 H 1.09001 * 109.46952 * 282.64441 * 3 2 1 31 31 H 1.08993 * 109.47107 * 162.63942 * 3 2 1 32 32 H 1.08996 * 113.61863 * 334.56949 * 6 4 3 33 33 H 1.09000 * 113.61639 * 105.39103 * 6 4 3 34 34 H 0.97003 * 120.00006 * 25.00058 * 9 7 6 35 35 H 1.08998 * 109.46788 * 300.00451 * 14 13 12 36 36 H 1.09001 * 109.46631 * 60.00042 * 14 13 12 37 37 H 1.07996 * 120.02927 * 359.97438 * 17 16 15 38 38 H 1.08997 * 109.46975 * 305.25705 * 19 18 17 39 39 H 0.96695 * 114.00326 * 60.00430 * 20 19 18 40 40 H 1.48496 * 109.99796 * 180.02562 * 21 19 18 41 41 H 1.48495 * 109.99518 * 301.31794 * 21 19 18 42 42 H 1.08003 * 119.94533 * 179.74438 * 22 18 17 43 43 H 1.08001 * 119.97157 * 179.97438 * 23 22 18 44 44 H 1.08002 * 120.02520 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.92701 * 180.02562 * 25 13 12 46 46 H 1.07993 * 119.85784 * 180.02562 * 26 25 13 47 47 H 1.07998 * 119.92474 * 179.97438 * 27 26 25 48 48 H 1.08003 * 120.07240 * 180.27984 * 28 27 26 49 49 H 1.08998 * 113.61309 * 254.53027 * 29 4 3 50 50 H 1.08996 * 113.61425 * 25.43402 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0603 -0.9772 5 1 2.5943 -2.0111 -0.8816 6 6 4.6499 -1.1997 -0.9903 7 6 4.5441 -1.3535 -2.5168 8 1 5.3323 -0.8358 -3.0634 9 7 4.3634 -2.7394 -2.9558 10 6 4.7474 -3.1098 -4.1935 11 8 5.2432 -2.2938 -4.9457 12 6 4.5645 -4.5084 -4.6368 13 6 4.9605 -4.8949 -5.9179 14 6 5.5753 -3.8871 -6.8546 15 8 5.8926 -4.5215 -8.0952 16 6 6.4590 -3.7465 -9.0572 17 6 6.7980 -4.2987 -10.2837 18 6 7.3691 -3.5076 -11.2619 19 6 7.7329 -4.1056 -12.5966 20 8 6.5443 -4.5207 -13.2724 21 14 8.6204 -2.8319 -13.6266 22 6 7.6121 -2.1692 -11.0156 23 6 7.2798 -1.6175 -9.7918 24 6 6.7046 -2.4032 -8.8122 25 6 4.7875 -6.2018 -6.3251 26 6 4.2234 -7.1283 -5.4665 27 6 3.8285 -6.7514 -4.1948 28 6 4.0003 -5.4492 -3.7735 29 6 3.2278 -0.5603 -2.4274 30 1 2.9714 -0.2241 1.0028 31 1 2.9709 0.9816 -0.3066 32 1 5.1733 -0.2962 -0.6777 33 1 5.0112 -2.0948 -0.4839 34 1 3.9674 -3.3906 -2.3557 35 1 4.8680 -3.0769 -7.0316 36 1 6.4849 -3.4845 -6.4089 37 1 6.6124 -5.3453 -10.4751 38 1 8.3835 -4.9667 -12.4437 39 1 5.9177 -3.8041 -13.4422 40 1 8.9841 -3.4092 -14.9456 41 1 7.7558 -1.6395 -13.8155 42 1 8.0624 -1.5534 -11.7801 43 1 7.4710 -0.5717 -9.6016 44 1 6.4457 -1.9720 -7.8564 45 1 5.0939 -6.5024 -7.3162 46 1 4.0905 -8.1500 -5.7899 47 1 3.3884 -7.4794 -3.5294 48 1 3.6959 -5.1574 -2.7792 49 1 2.4425 -0.9406 -3.0807 50 1 3.3617 0.5184 -2.5084 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_4557126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:16 Heat of formation + Delta-G solvation = 9.851120 kcal Electronic energy + Delta-G solvation = -33030.090391 eV Core-core repulsion = 28569.322572 eV Total energy + Delta-G solvation = -4460.767819 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.86216 -41.24244 -40.33724 -39.22306 -38.86841 -37.48034 -37.38494 -34.90651 -33.31620 -32.52328 -32.35186 -31.02815 -30.78519 -27.90869 -26.69072 -26.59804 -25.33152 -24.19324 -23.64493 -23.08823 -21.82113 -21.78411 -20.21304 -19.18997 -19.12865 -18.41803 -17.99963 -17.41657 -17.25419 -17.19386 -17.04602 -16.52117 -16.25118 -16.19986 -16.14192 -15.76818 -15.67994 -15.50506 -15.43380 -14.89770 -14.75399 -14.57990 -14.29609 -14.13778 -14.11478 -14.02230 -13.71618 -13.62686 -13.36045 -13.29675 -13.06758 -13.02563 -12.80541 -12.52162 -12.35350 -12.21878 -12.19131 -12.01226 -11.83296 -11.60090 -11.44314 -11.09580 -10.92227 -10.66537 -10.24298 -9.99234 -9.96140 -9.81315 -9.29200 -4.90679 -0.27058 0.17505 0.25455 0.36903 1.29037 1.61607 1.75718 1.83693 1.88656 1.91299 2.03450 2.04979 2.63333 2.72545 3.09515 3.38836 3.52620 3.54697 3.59184 3.65310 3.73819 3.80510 3.83658 3.93385 3.99386 4.03054 4.09077 4.18239 4.21830 4.24871 4.34116 4.39425 4.43464 4.45618 4.53307 4.65595 4.66928 4.74388 4.78104 4.88444 4.90169 4.94266 4.95427 4.98440 5.12194 5.17239 5.21302 5.23665 5.28215 5.33601 5.36622 5.41618 5.43685 5.65136 5.70397 5.81411 6.31842 6.43586 6.45572 6.68468 7.09924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.233 3.767 3 C -0.015 4.015 4 C -0.101 4.101 5 H 0.097 0.903 6 C -0.116 4.116 7 C 0.106 3.894 8 H 0.091 0.909 9 N -0.695 5.695 10 C 0.557 3.443 11 O -0.568 6.568 12 C -0.148 4.148 13 C -0.053 4.053 14 C 0.118 3.882 15 O -0.328 6.328 16 C 0.116 3.884 17 C -0.140 4.140 18 C -0.081 4.081 19 C -0.088 4.088 20 O -0.548 6.548 21 Si 0.779 3.221 22 C -0.157 4.157 23 C -0.074 4.074 24 C -0.209 4.209 25 C -0.124 4.124 26 C -0.091 4.091 27 C -0.124 4.124 28 C -0.077 4.077 29 C -0.155 4.155 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.413 0.587 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.386 0.614 40 H -0.301 1.301 41 H -0.280 1.280 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.150 0.850 47 H 0.161 0.839 48 H 0.160 0.840 49 H 0.049 0.951 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 0.311 7.299 9.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.083 4.083 3 C -0.055 4.055 4 C -0.121 4.121 5 H 0.115 0.885 6 C -0.154 4.154 7 C 0.001 3.999 8 H 0.109 0.891 9 N -0.346 5.346 10 C 0.346 3.654 11 O -0.449 6.449 12 C -0.151 4.151 13 C -0.054 4.054 14 C 0.044 3.956 15 O -0.242 6.242 16 C 0.071 3.929 17 C -0.159 4.159 18 C -0.081 4.081 19 C -0.196 4.196 20 O -0.357 6.357 21 Si 0.683 3.317 22 C -0.174 4.174 23 C -0.092 4.092 24 C -0.228 4.228 25 C -0.142 4.142 26 C -0.109 4.109 27 C -0.142 4.142 28 C -0.096 4.096 29 C -0.194 4.194 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.143 0.857 33 H 0.110 0.890 34 H 0.252 0.748 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.235 0.765 40 H -0.229 1.229 41 H -0.206 1.206 42 H 0.166 0.834 43 H 0.170 0.830 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.168 0.832 47 H 0.178 0.822 48 H 0.178 0.822 49 H 0.068 0.932 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.225 0.591 6.127 7.466 hybrid contribution -1.421 -0.292 -0.099 1.455 sum 2.803 0.299 6.028 6.655 Atomic orbital electron populations 1.81324 1.15920 1.11118 1.11411 1.30155 0.96182 0.91065 0.90889 1.19735 0.78192 1.03142 1.04408 1.22556 0.97370 0.98759 0.93416 0.88504 1.23336 0.94320 1.05433 0.92284 1.22032 0.98515 0.81558 0.97800 0.89119 1.45492 1.62685 1.12031 1.14433 1.18422 0.77349 0.87445 0.82187 1.90734 1.45698 1.54126 1.54343 1.19693 1.06478 0.93976 0.94991 1.19724 0.97588 0.94911 0.93148 1.21509 1.00092 0.93231 0.80788 1.85935 1.75933 1.38759 1.23617 1.19166 0.94336 0.90316 0.89082 1.20324 1.03603 1.01007 0.90965 1.20161 0.98234 0.93953 0.95780 1.25380 0.91779 1.09394 0.93051 1.86572 1.31207 1.39392 1.78483 0.93843 0.85925 0.74360 0.77533 1.21207 1.03214 0.94427 0.98594 1.21231 0.95168 1.00784 0.92010 1.21549 1.05931 0.93193 1.02117 1.21120 0.99740 0.92187 1.01104 1.21760 0.94864 1.00505 0.93739 1.21570 0.99505 0.96579 0.96544 1.21583 0.95671 0.92775 0.99525 1.23679 0.97173 1.01664 0.96887 0.83739 0.84603 0.85735 0.88978 0.74830 0.90724 0.90201 0.85503 0.85749 0.76479 1.22927 1.20619 0.83413 0.82965 0.84884 0.85029 0.83209 0.82185 0.82222 0.93238 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.48 18.54 20.01 0.37 -4.11 16 2 C 0.23 -0.33 15.42 89.44 1.38 1.05 16 3 C -0.02 0.21 5.53 28.79 0.16 0.37 16 4 C -0.10 1.25 3.48 -10.27 -0.04 1.21 16 5 H 0.10 -1.14 8.13 -2.39 -0.02 -1.16 16 6 C -0.12 1.63 7.39 31.12 0.23 1.86 16 7 C 0.11 -0.70 4.33 45.58 0.20 -0.50 16 8 H 0.09 -0.22 7.46 -2.39 -0.02 -0.23 16 9 N -0.69 3.37 5.21 -442.63 -2.31 1.06 16 10 C 0.56 1.48 7.75 86.79 0.67 2.15 16 11 O -0.57 -5.13 13.01 -3.86 -0.05 -5.18 16 12 C -0.15 -0.28 5.87 -20.09 -0.12 -0.39 16 13 C -0.05 -0.29 5.91 -19.61 -0.12 -0.40 16 14 C 0.12 0.91 3.38 71.24 0.24 1.15 16 15 O -0.33 -3.05 8.62 -92.43 -0.80 -3.84 16 16 C 0.12 0.99 6.69 22.50 0.15 1.14 16 17 C -0.14 -1.01 9.63 22.37 0.22 -0.79 16 18 C -0.08 -0.29 5.35 -19.88 -0.11 -0.40 16 19 C -0.09 -0.15 2.80 71.24 0.20 0.05 16 20 O -0.55 -2.77 12.84 -148.98 -1.91 -4.69 16 21 Si 0.78 -0.78 29.88 68.60 2.05 1.27 16 22 C -0.16 -0.23 8.67 22.28 0.19 -0.03 16 23 C -0.07 -0.17 10.04 22.26 0.22 0.05 16 24 C -0.21 -1.29 9.04 22.36 0.20 -1.08 16 25 C -0.12 -0.43 9.37 22.23 0.21 -0.22 16 26 C -0.09 0.14 10.04 22.33 0.22 0.37 16 27 C -0.12 0.57 10.03 22.23 0.22 0.80 16 28 C -0.08 0.33 9.54 22.53 0.21 0.54 16 29 C -0.16 1.12 7.44 31.18 0.23 1.36 16 30 H 0.14 -2.70 8.14 -2.39 -0.02 -2.72 16 31 H 0.14 -2.36 7.87 -2.39 -0.02 -2.37 16 32 H 0.12 -2.15 8.10 -2.39 -0.02 -2.17 16 33 H 0.09 -1.41 8.14 -2.39 -0.02 -1.43 16 34 H 0.41 -4.34 6.74 -92.71 -0.62 -4.96 16 35 H 0.07 0.71 6.87 -2.39 -0.02 0.70 16 36 H 0.08 0.70 6.86 -2.39 -0.02 0.68 16 37 H 0.13 0.94 8.06 -2.91 -0.02 0.91 16 38 H 0.12 0.03 7.96 -2.39 -0.02 0.01 16 39 H 0.39 -0.21 8.70 -74.06 -0.64 -0.85 16 40 H -0.30 -1.91 7.11 99.48 0.71 -1.21 16 41 H -0.28 -0.63 7.01 99.48 0.70 0.07 16 42 H 0.15 -0.46 4.84 -2.91 -0.01 -0.48 16 43 H 0.15 -0.42 8.06 -2.91 -0.02 -0.44 16 44 H 0.13 0.80 6.30 -2.91 -0.02 0.79 16 45 H 0.13 0.58 7.00 -2.91 -0.02 0.55 16 46 H 0.15 -0.88 8.06 -2.91 -0.02 -0.90 16 47 H 0.16 -1.64 8.06 -2.91 -0.02 -1.67 16 48 H 0.16 -1.85 6.41 -2.91 -0.02 -1.87 16 49 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 50 H 0.11 -0.98 7.92 -2.39 -0.02 -0.99 16 Total: 0.00 -29.00 417.70 1.91 -27.09 By element: Atomic # 1 Polarization: -19.63 SS G_CDS: -0.23 Total: -19.87 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 4.79 Total: 8.26 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -1.94 Total: -3.04 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -2.76 Total: -13.71 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: 2.05 Total: 1.27 kcal Total: -29.00 1.91 -27.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_4557126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.937 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds