Wall clock time and date at job start Tue Mar 9 2021 13:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47002 * 7.61681 * 3 2 1 5 5 H 1.08994 * 112.84906 * 43.80609 * 4 3 2 6 6 C 1.53779 * 113.69051 * 272.53588 * 4 3 2 7 7 C 1.53782 * 87.07906 * 220.00861 * 6 4 3 8 8 H 1.09001 * 113.69152 * 139.98811 * 7 6 4 9 9 N 1.46499 * 113.61688 * 270.88214 * 7 6 4 10 10 C 1.34777 * 120.00199 * 252.50182 * 9 7 6 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27479 * 10 9 7 13 13 O 1.42899 * 109.46876 * 179.72354 * 12 10 9 14 14 C 1.35897 * 116.99793 * 179.97438 * 13 12 10 15 15 C 1.38706 * 120.05802 * 179.97438 * 14 13 12 16 16 C 1.38168 * 119.94612 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.96937 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.47039 * 299.99567 * 17 16 15 19 19 Si 1.86305 * 109.46680 * 179.97438 * 17 16 15 20 20 C 1.38244 * 120.05720 * 359.97438 * 16 15 14 21 21 C 1.38283 * 120.10878 * 359.97438 * 20 16 15 22 22 C 1.38122 * 120.05950 * 359.75571 * 21 20 16 23 23 C 1.53781 * 87.08318 * 25.43197 * 7 6 4 24 24 H 1.09007 * 109.47185 * 247.61802 * 3 2 1 25 25 H 1.08998 * 109.47212 * 127.61451 * 3 2 1 26 26 H 1.09000 * 113.61513 * 105.46030 * 6 4 3 27 27 H 1.08999 * 113.61644 * 334.55429 * 6 4 3 28 28 H 0.97000 * 119.99484 * 72.49279 * 9 7 6 29 29 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 30 30 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 31 31 H 1.08002 * 120.02865 * 359.97438 * 15 14 13 32 32 H 1.08994 * 109.47332 * 59.99937 * 17 16 15 33 33 H 0.96704 * 114.00482 * 299.99986 * 18 17 16 34 34 H 1.48506 * 109.99885 * 58.68218 * 19 17 16 35 35 H 1.48510 * 109.99624 * 179.97438 * 19 17 16 36 36 H 1.08001 * 119.94576 * 180.02562 * 20 16 15 37 37 H 1.07998 * 119.96894 * 180.02562 * 21 20 16 38 38 H 1.07995 * 120.03299 * 180.28047 * 22 21 20 39 39 H 1.09007 * 113.61281 * 89.11336 * 23 7 6 40 40 H 1.08993 * 113.61840 * 220.01520 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4290 -0.1912 5 1 2.5765 -1.9720 -0.9653 6 6 3.2662 -2.2133 1.1232 7 6 4.5677 -2.7899 0.5414 8 1 5.3748 -2.8709 1.2695 9 7 4.3716 -4.0199 -0.2298 10 6 4.7723 -5.2033 0.2757 11 8 5.2957 -5.2498 1.3688 12 6 4.5761 -6.4679 -0.5203 13 8 5.0837 -7.5800 0.2197 14 6 4.9831 -8.8047 -0.3606 15 6 5.4560 -9.9281 0.3014 16 6 5.3531 -11.1721 -0.2910 17 6 5.8662 -12.3931 0.4280 18 8 7.2650 -12.2449 0.6797 19 14 5.5810 -13.9012 -0.6281 20 6 4.7788 -11.2978 -1.5423 21 6 4.3056 -10.1795 -2.2038 22 6 4.4011 -8.9344 -1.6136 23 6 4.6474 -1.5239 -0.3280 24 1 2.9712 0.3922 0.9503 25 1 2.9711 0.6280 -0.8140 26 1 2.4874 -2.9606 1.2756 27 1 3.4215 -1.5785 1.9955 28 1 3.9532 -3.9826 -1.1041 29 1 3.5134 -6.6145 -0.7133 30 1 5.1097 -6.3875 -1.4673 31 1 5.9051 -9.8305 1.2787 32 1 5.3369 -12.5070 1.3739 33 1 7.7994 -12.1387 -0.1193 34 1 6.2710 -13.7449 -1.9337 35 1 6.0833 -15.1121 0.0696 36 1 4.6989 -12.2711 -2.0035 37 1 3.8570 -10.2803 -3.1811 38 1 4.0273 -8.0619 -2.1287 39 1 5.1803 -0.7004 0.1477 40 1 4.9837 -1.7144 -1.3471 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_4860298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:20 Heat of formation + Delta-G solvation = -22.183779 kcal Electronic energy + Delta-G solvation = -23121.665492 eV Core-core repulsion = 19483.488335 eV Total energy + Delta-G solvation = -3638.177156 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67387 -41.04572 -39.75164 -38.85795 -37.49002 -37.32686 -34.74040 -32.49178 -31.84756 -31.08381 -29.08156 -26.83701 -26.60498 -24.43345 -23.67715 -22.75537 -21.68098 -20.27529 -19.36376 -18.83410 -18.30309 -17.68965 -17.47217 -17.32380 -17.01115 -16.61806 -16.24977 -15.96034 -15.92301 -15.47422 -15.35404 -15.05261 -14.74449 -14.46031 -14.15468 -14.03463 -13.97770 -13.74739 -13.46904 -13.31294 -13.08627 -12.98995 -12.60839 -12.35564 -12.12020 -12.04020 -11.85534 -11.61500 -11.45406 -11.10864 -11.02980 -10.69141 -10.12596 -9.93363 -9.29339 -4.91183 0.20024 0.38712 1.27370 1.40812 1.49208 1.61749 1.84324 1.89308 1.96684 2.58643 2.66355 3.09656 3.39418 3.51593 3.55780 3.65506 3.72079 3.83736 3.90832 3.98308 4.00109 4.08185 4.12558 4.24598 4.36891 4.43664 4.54277 4.63481 4.68496 4.77987 4.87479 4.93313 4.97828 4.98043 5.11940 5.19834 5.24120 5.27315 5.36679 5.44414 5.62423 5.69957 6.27021 6.45908 6.46264 6.69013 7.12217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.234 3.766 3 C -0.016 4.016 4 C -0.099 4.099 5 H 0.101 0.899 6 C -0.156 4.156 7 C 0.104 3.896 8 H 0.082 0.918 9 N -0.693 5.693 10 C 0.513 3.487 11 O -0.573 6.573 12 C 0.037 3.963 13 O -0.324 6.324 14 C 0.113 3.887 15 C -0.150 4.150 16 C -0.082 4.082 17 C -0.095 4.095 18 O -0.551 6.551 19 Si 0.785 3.215 20 C -0.157 4.157 21 C -0.071 4.071 22 C -0.202 4.202 23 C -0.114 4.114 24 H 0.134 0.866 25 H 0.146 0.854 26 H 0.052 0.948 27 H 0.105 0.895 28 H 0.421 0.579 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.386 0.614 34 H -0.276 1.276 35 H -0.306 1.306 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.122 0.878 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 2.866 -8.799 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.083 4.083 3 C -0.055 4.055 4 C -0.118 4.118 5 H 0.119 0.881 6 C -0.195 4.195 7 C -0.002 4.002 8 H 0.100 0.900 9 N -0.346 5.346 10 C 0.300 3.700 11 O -0.452 6.452 12 C -0.041 4.041 13 O -0.237 6.237 14 C 0.068 3.932 15 C -0.169 4.169 16 C -0.082 4.082 17 C -0.202 4.202 18 O -0.359 6.359 19 Si 0.689 3.311 20 C -0.174 4.174 21 C -0.088 4.088 22 C -0.220 4.220 23 C -0.152 4.152 24 H 0.152 0.848 25 H 0.163 0.837 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.259 0.741 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.236 0.764 34 H -0.202 1.202 35 H -0.234 1.234 36 H 0.167 0.833 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.140 0.860 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.062 2.201 -7.638 8.020 hybrid contribution 1.174 0.509 0.036 1.280 sum 0.112 2.709 -7.603 8.072 Atomic orbital electron populations 1.81324 1.15892 1.10914 1.11587 1.30131 0.96150 0.91069 0.90907 1.19730 0.78243 0.99165 1.08378 1.22551 0.97263 0.94027 0.97997 0.88066 1.23660 0.97182 0.99910 0.98747 1.21983 0.98547 0.83993 0.95629 0.89963 1.45375 1.61834 1.04930 1.22509 1.20547 0.77597 0.85770 0.86126 1.90768 1.44153 1.87161 1.23090 1.22739 1.03132 0.82800 0.95396 1.86123 1.78243 1.13716 1.45649 1.19197 0.96793 0.84151 0.93027 1.20295 1.04618 0.90782 1.01242 1.20136 0.98665 0.94110 0.95329 1.25473 0.83160 1.03547 1.08065 1.86579 1.17509 1.94750 1.37090 0.93893 0.90490 0.71941 0.74750 1.21218 1.01508 1.00261 0.94455 1.21335 0.96170 0.90835 1.00481 1.21637 1.04850 1.00878 0.94668 1.23333 0.94466 0.95934 1.01495 0.84803 0.83686 0.92943 0.87704 0.74100 0.85873 0.85568 0.87055 0.86327 0.76444 1.20206 1.23412 0.83333 0.81946 0.82167 0.85995 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.26 18.54 20.01 0.37 -3.89 16 2 C 0.23 -0.41 15.42 89.44 1.38 0.97 16 3 C -0.02 0.22 5.54 28.79 0.16 0.37 16 4 C -0.10 1.26 3.49 -10.27 -0.04 1.23 16 5 H 0.10 -1.32 8.12 -2.39 -0.02 -1.33 16 6 C -0.16 1.11 7.43 31.12 0.23 1.34 16 7 C 0.10 -0.64 4.32 45.52 0.20 -0.44 16 8 H 0.08 -0.02 7.46 -2.39 -0.02 -0.04 16 9 N -0.69 4.45 5.26 -440.03 -2.32 2.14 16 10 C 0.51 1.02 7.91 87.66 0.69 1.72 16 11 O -0.57 -8.20 16.10 16.00 0.26 -7.94 16 12 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 13 O -0.32 -2.24 9.67 -73.35 -0.71 -2.95 16 14 C 0.11 0.48 6.69 22.51 0.15 0.63 16 15 C -0.15 -0.99 9.55 22.36 0.21 -0.78 16 16 C -0.08 -0.18 5.39 -19.88 -0.11 -0.28 16 17 C -0.09 -0.16 2.82 71.24 0.20 0.04 16 18 O -0.55 -3.04 12.77 -148.98 -1.90 -4.95 16 19 Si 0.79 -1.51 29.79 68.60 2.04 0.53 16 20 C -0.16 0.36 8.67 22.28 0.19 0.55 16 21 C -0.07 0.32 10.04 22.25 0.22 0.54 16 22 C -0.20 0.59 9.04 22.37 0.20 0.79 16 23 C -0.11 1.62 7.39 31.12 0.23 1.85 16 24 H 0.13 -2.28 7.85 -2.38 -0.02 -2.30 16 25 H 0.15 -2.74 8.14 -2.39 -0.02 -2.76 16 26 H 0.05 -0.13 8.14 -2.39 -0.02 -0.14 16 27 H 0.10 -0.88 7.90 -2.39 -0.02 -0.90 16 28 H 0.42 -5.91 8.70 -92.71 -0.81 -6.71 16 29 H 0.12 -1.17 7.65 -2.38 -0.02 -1.19 16 30 H 0.13 -1.28 7.68 -2.39 -0.02 -1.30 16 31 H 0.11 1.14 8.06 -2.91 -0.02 1.11 16 32 H 0.12 0.14 7.96 -2.39 -0.02 0.12 16 33 H 0.39 -0.26 8.70 -74.05 -0.64 -0.90 16 34 H -0.28 -0.20 7.11 99.48 0.71 0.51 16 35 H -0.31 -1.89 7.11 99.48 0.71 -1.18 16 36 H 0.15 -1.01 4.87 -2.91 -0.01 -1.02 16 37 H 0.16 -1.75 8.06 -2.91 -0.02 -1.78 16 38 H 0.16 -1.60 6.30 -2.91 -0.02 -1.62 16 39 H 0.12 -2.05 8.10 -2.38 -0.02 -2.07 16 40 H 0.09 -1.53 8.14 -2.39 -0.02 -1.55 16 Total: 0.00 -35.07 347.08 1.72 -33.35 By element: Atomic # 1 Polarization: -24.75 SS G_CDS: -0.32 Total: -25.07 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.30 Total: 8.78 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: -1.94 Total: -1.75 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -2.35 Total: -15.83 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.04 Total: 0.53 kcal Total: -35.07 1.72 -33.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_4860298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.161 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds