Wall clock time and date at job start Tue Mar 9 2021 13:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35962 * 117.00173 * 2 1 4 4 C 1.39450 * 120.12498 * 179.97438 * 3 2 1 5 5 O 1.34771 * 133.23912 * 0.39140 * 4 3 2 6 6 C 1.34931 * 110.84001 * 180.09765 * 5 4 3 7 7 C 1.46996 * 125.13942 * 179.81338 * 6 5 4 8 8 O 1.21651 * 119.99854 * 179.69992 * 7 6 5 9 9 N 1.34776 * 120.00035 * 359.70433 * 7 6 5 10 10 C 1.46499 * 119.99999 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.84964 * 23.80229 * 10 9 7 12 12 C 1.53783 * 113.61210 * 154.99616 * 10 9 7 13 13 C 1.53786 * 87.08050 * 89.20097 * 12 10 9 14 14 H 1.09002 * 113.61357 * 270.88070 * 13 12 10 15 15 C 1.53003 * 113.61503 * 140.06140 * 13 12 10 16 16 C 1.47202 * 109.46984 * 176.52528 * 15 13 12 17 17 N 9.24715 * 132.37205 * 211.41189 * 2 1 3 18 18 C 1.53781 * 87.17350 * 25.47154 * 13 12 10 19 19 C 1.35810 * 109.71772 * 359.55727 * 6 5 4 20 20 C 1.40607 * 119.14030 * 180.02562 * 4 3 2 21 21 C 1.39783 * 120.11594 * 0.02562 * 20 4 3 22 22 C 1.50702 * 120.08881 * 179.97438 * 21 20 4 23 23 O 1.42901 * 109.47076 * 284.99038 * 22 21 20 24 24 Si 1.86305 * 109.46869 * 164.99719 * 22 21 20 25 25 C 1.36631 * 119.81573 * 359.97438 * 21 20 4 26 26 C 1.38262 * 120.11921 * 0.02710 * 3 2 1 27 27 H 1.08999 * 109.47208 * 60.00138 * 1 2 3 28 28 H 1.08999 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47212 * 299.99878 * 1 2 3 30 30 H 0.96999 * 119.99974 * 359.97438 * 9 7 6 31 31 H 1.08992 * 113.61796 * 334.64954 * 12 10 9 32 32 H 1.09005 * 113.68996 * 203.75566 * 12 10 9 33 33 H 1.08997 * 109.46971 * 296.52802 * 15 13 12 34 34 H 1.09004 * 109.46713 * 56.53041 * 15 13 12 35 35 H 1.08999 * 113.61567 * 89.07405 * 18 13 12 36 36 H 1.08998 * 113.61196 * 219.97759 * 18 13 12 37 37 H 1.08004 * 126.95163 * 180.28730 * 19 6 5 38 38 H 1.08994 * 109.47904 * 44.99513 * 22 21 20 39 39 H 0.96707 * 114.00254 * 300.00761 * 23 22 21 40 40 H 1.48499 * 109.99945 * 179.97438 * 24 22 21 41 41 H 1.48503 * 109.99975 * 301.31674 * 24 22 21 42 42 H 1.07996 * 119.75462 * 180.02562 * 25 21 20 43 43 H 1.07998 * 119.66065 * 359.97438 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4387 1.2874 0.0005 5 8 4.4140 0.3574 -0.0056 6 6 5.6317 0.9387 0.0004 7 6 6.9131 0.2185 0.0002 8 8 7.9595 0.8389 0.0005 9 7 6.9287 -1.1292 -0.0003 10 6 8.2058 -1.8470 -0.0011 11 1 9.0251 -1.2534 0.4042 12 6 8.1172 -3.2623 0.5940 13 6 7.7823 -3.7526 -0.8246 14 1 6.7160 -3.7401 -1.0505 15 6 8.4511 -5.0799 -1.1882 16 6 8.0050 -5.5040 -2.5254 17 7 7.6610 -5.8304 -3.5606 18 6 8.5372 -2.5190 -1.3471 19 6 5.4943 2.2898 0.0010 20 6 4.0554 2.5510 0.0011 21 6 3.2765 3.7117 0.0016 22 6 3.9381 5.0656 0.0028 23 8 4.4599 5.3397 1.3046 24 14 2.6866 6.3688 -0.4515 25 6 1.9136 3.6151 0.0011 26 6 1.2957 2.3726 0.0006 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.0943 -1.6239 -0.0002 31 1 7.2995 -3.3872 1.3036 32 1 9.0676 -3.6383 0.9728 33 1 9.5336 -4.9528 -1.1896 34 1 8.1751 -5.8384 -0.4556 35 1 9.6028 -2.6909 -1.4985 36 1 8.0582 -2.0443 -2.2034 37 1 6.2874 3.0231 0.0009 38 1 4.7508 5.0736 -0.7235 39 1 3.7908 5.3484 2.0028 40 1 3.3265 7.7088 -0.4533 41 1 2.1130 6.0775 -1.7899 42 1 1.3127 4.5125 0.0011 43 1 0.2174 2.3119 0.0006 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_6672420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:44 Heat of formation + Delta-G solvation = -14.781479 kcal Electronic energy + Delta-G solvation = -28971.824853 eV Core-core repulsion = 24758.834212 eV Total energy + Delta-G solvation = -4212.990642 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.79651 -41.42470 -40.63352 -39.61066 -39.08312 -37.46270 -37.01137 -34.85409 -33.68995 -31.99503 -31.42294 -30.66850 -28.54822 -26.64834 -26.38271 -25.67147 -24.01960 -23.92379 -22.16074 -21.81058 -20.34674 -19.92010 -19.08780 -18.65557 -18.39413 -17.85219 -17.73313 -17.19277 -16.93088 -16.62485 -16.25811 -16.18764 -16.03715 -15.78233 -15.59474 -15.47478 -14.84948 -14.59922 -14.54547 -14.44321 -14.19049 -14.04703 -13.73414 -13.58438 -13.42973 -13.36881 -13.28468 -13.12073 -12.42777 -12.39744 -12.30371 -12.10179 -11.97746 -11.92200 -11.60021 -11.51618 -11.15126 -11.05209 -10.45370 -10.29824 -9.85237 -9.02814 -5.00980 -0.71280 0.07850 0.57264 1.13693 1.29551 1.67630 1.79383 1.83274 1.84963 1.87009 1.99754 2.12052 2.37795 3.06581 3.14639 3.40402 3.49391 3.61187 3.67246 3.68392 3.78525 3.84425 3.86008 3.94110 3.96194 4.15600 4.32323 4.38723 4.39725 4.42211 4.43569 4.62966 4.71160 4.76211 4.79688 4.82070 4.84631 4.88851 4.94859 5.02341 5.07395 5.11293 5.19569 5.19933 5.32152 5.51314 5.59253 6.16508 6.26837 6.66115 6.78495 6.79049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.136 3.864 4 C 0.020 3.980 5 O -0.181 6.181 6 C -0.034 4.034 7 C 0.604 3.396 8 O -0.544 6.544 9 N -0.687 5.687 10 C 0.100 3.900 11 H 0.099 0.901 12 C -0.114 4.114 13 C -0.104 4.104 14 H 0.090 0.910 15 C -0.013 4.013 16 C 0.232 3.768 17 N -0.520 5.520 18 C -0.153 4.153 19 C -0.116 4.116 20 C -0.099 4.099 21 C -0.108 4.108 22 C -0.080 4.080 23 O -0.554 6.554 24 Si 0.797 3.203 25 C -0.079 4.079 26 C -0.165 4.165 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.416 0.584 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.116 0.884 36 H 0.049 0.951 37 H 0.169 0.831 38 H 0.096 0.904 39 H 0.396 0.604 40 H -0.301 1.301 41 H -0.281 1.281 42 H 0.176 0.824 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -0.812 7.030 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.090 3.910 4 C -0.029 4.029 5 O -0.083 6.083 6 C -0.084 4.084 7 C 0.389 3.611 8 O -0.423 6.423 9 N -0.337 5.337 10 C -0.004 4.004 11 H 0.117 0.883 12 C -0.151 4.151 13 C -0.124 4.124 14 H 0.109 0.891 15 C -0.052 4.052 16 C -0.084 4.084 17 N -0.198 5.198 18 C -0.192 4.192 19 C -0.137 4.137 20 C -0.100 4.100 21 C -0.109 4.109 22 C -0.189 4.189 23 O -0.362 6.362 24 Si 0.701 3.299 25 C -0.096 4.096 26 C -0.183 4.183 27 H 0.092 0.908 28 H 0.133 0.867 29 H 0.097 0.903 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.187 0.813 38 H 0.114 0.886 39 H 0.246 0.754 40 H -0.229 1.229 41 H -0.208 1.208 42 H 0.193 0.807 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.987 -0.773 4.594 7.586 hybrid contribution 0.300 -0.285 -0.316 0.521 sum -5.688 -1.059 4.279 7.196 Atomic orbital electron populations 1.23493 0.75249 1.06012 1.03266 1.86142 1.24380 1.25848 1.88457 1.18005 0.86041 0.86955 1.00022 1.19233 0.88315 0.87062 1.08240 1.84005 1.12696 1.35061 1.76525 1.21979 0.84129 0.92723 1.09578 1.16646 0.84874 0.82923 0.76614 1.90890 1.31345 1.68270 1.51831 1.45569 1.11018 1.04644 1.72489 1.22215 0.85361 0.94145 0.98695 0.88311 1.23352 1.05590 0.90931 0.95273 1.22561 1.00149 0.92142 0.97554 0.89130 1.19725 1.03539 0.98141 0.83810 1.30281 0.91508 0.91255 0.95313 1.81427 1.11725 1.11737 1.14930 1.23714 1.02664 0.96431 0.96359 1.22847 0.95467 0.94499 1.00870 1.19600 0.92308 0.92970 1.05126 1.19693 0.93795 0.93928 1.03496 1.25356 1.05827 0.98617 0.89068 1.86505 1.39668 1.93358 1.16709 0.93844 0.80314 0.73113 0.82622 1.20798 0.92421 0.98630 0.97730 1.21438 1.01994 0.89524 1.05386 0.90782 0.86746 0.90276 0.74682 0.89288 0.84914 0.84161 0.83687 0.86578 0.93252 0.81341 0.88594 0.75406 1.22891 1.20772 0.80717 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.75 10.50 -93.13 -0.98 -1.72 16 3 C 0.14 0.38 6.70 22.57 0.15 0.53 16 4 C 0.02 0.15 7.35 23.14 0.17 0.32 16 5 O -0.18 -1.53 10.28 -13.39 -0.14 -1.67 16 6 C -0.03 -0.29 7.07 24.00 0.17 -0.12 16 7 C 0.60 4.83 7.80 86.54 0.67 5.51 16 8 O -0.54 -7.68 16.42 -4.19 -0.07 -7.75 16 9 N -0.69 -0.48 5.26 -443.28 -2.33 -2.81 16 10 C 0.10 -0.34 4.33 45.61 0.20 -0.15 16 11 H 0.10 -0.04 7.46 -2.39 -0.02 -0.06 16 12 C -0.11 1.29 7.39 31.12 0.23 1.52 16 13 C -0.10 0.98 3.48 -10.26 -0.04 0.94 16 14 H 0.09 -0.67 8.13 -2.39 -0.02 -0.69 16 15 C -0.01 0.15 5.53 28.79 0.16 0.31 16 16 C 0.23 0.12 15.43 89.41 1.38 1.50 16 17 N -0.52 -5.45 18.56 20.04 0.37 -5.07 16 18 C -0.15 0.74 7.45 31.21 0.23 0.98 16 19 C -0.12 -1.04 10.68 23.79 0.25 -0.78 16 20 C -0.10 -0.67 6.16 -20.25 -0.12 -0.80 16 21 C -0.11 -0.14 5.26 -19.87 -0.10 -0.25 16 22 C -0.08 -0.04 2.71 71.24 0.19 0.16 16 23 O -0.55 -0.73 12.88 -148.98 -1.92 -2.65 16 24 Si 0.80 -3.01 29.93 68.60 2.05 -0.96 16 25 C -0.08 0.35 8.62 22.02 0.19 0.54 16 26 C -0.16 0.66 9.03 22.40 0.20 0.86 16 27 H 0.07 -0.75 7.66 -2.39 -0.02 -0.77 16 28 H 0.11 -1.09 8.14 -2.39 -0.02 -1.11 16 29 H 0.08 -0.87 7.66 -2.39 -0.02 -0.88 16 30 H 0.42 -1.02 8.42 -92.71 -0.78 -1.81 16 31 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 32 H 0.13 -2.11 8.10 -2.38 -0.02 -2.12 16 33 H 0.14 -2.28 7.88 -2.39 -0.02 -2.30 16 34 H 0.15 -2.45 8.14 -2.38 -0.02 -2.47 16 35 H 0.12 -0.93 7.92 -2.39 -0.02 -0.95 16 36 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.10 0.32 7.96 -2.39 -0.02 0.31 16 39 H 0.40 -3.06 8.70 -74.05 -0.64 -3.71 16 40 H -0.30 -1.32 7.11 99.48 0.71 -0.61 16 41 H -0.28 -0.19 7.11 99.48 0.71 0.52 16 42 H 0.18 -2.09 5.07 -2.91 -0.01 -2.11 16 43 H 0.18 -2.10 6.26 -2.91 -0.02 -2.12 16 Total: 0.00 -32.79 374.67 1.74 -31.04 By element: Atomic # 1 Polarization: -20.18 SS G_CDS: -0.29 Total: -20.47 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.05 Total: 12.06 kcal Atomic # 7 Polarization: -5.92 SS G_CDS: -1.96 Total: -7.89 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -3.10 Total: -13.79 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.05 Total: -0.96 kcal Total: -32.79 1.74 -31.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_6672420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.263 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds