Wall clock time and date at job start Tue Mar 9 2021 13:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47251 * 328.19060 * 3 2 1 5 5 H 1.08994 * 112.91063 * 316.24986 * 4 3 2 6 6 C 1.53786 * 113.61034 * 185.00103 * 4 3 2 7 7 C 1.53784 * 87.07885 * 220.02282 * 6 4 3 8 8 H 1.08992 * 113.61619 * 140.06935 * 7 6 4 9 9 N 1.46504 * 113.61221 * 270.88723 * 7 6 4 10 10 C 1.34778 * 120.00295 * 205.00050 * 9 7 6 11 11 O 1.21637 * 119.99660 * 359.97438 * 10 9 7 12 12 C 1.47181 * 120.00406 * 179.97438 * 10 9 7 13 13 C 1.36014 * 123.46252 * 359.97438 * 12 10 9 14 14 S 1.70441 * 110.81867 * 179.97438 * 13 12 10 15 15 C 1.75510 * 92.44743 * 0.02562 * 14 13 12 16 16 C 1.50699 * 124.71282 * 179.97438 * 15 14 13 17 17 O 1.42907 * 109.46603 * 245.02776 * 16 15 14 18 18 Si 1.86298 * 109.47032 * 5.02079 * 16 15 14 19 19 C 1.32762 * 110.57067 * 0.24293 * 15 14 13 20 20 C 1.53779 * 113.61211 * 87.50458 * 4 3 2 21 21 H 1.09002 * 109.46705 * 208.18769 * 3 2 1 22 22 H 1.09005 * 109.47007 * 88.19381 * 3 2 1 23 23 H 1.08997 * 113.61143 * 105.47393 * 6 4 3 24 24 H 1.08995 * 113.69476 * 334.57642 * 6 4 3 25 25 H 0.96998 * 119.99996 * 24.99670 * 9 7 6 26 26 H 1.08000 * 124.58886 * 0.03474 * 13 12 10 27 27 H 1.08996 * 109.47117 * 125.02689 * 16 15 14 28 28 H 0.96697 * 114.00527 * 59.99993 * 17 16 15 29 29 H 1.48506 * 109.99834 * 58.68765 * 18 16 15 30 30 H 1.48502 * 110.00011 * 180.02562 * 18 16 15 31 31 H 1.08004 * 123.45820 * 179.75395 * 19 15 14 32 32 H 1.09001 * 113.61731 * 25.43314 * 20 4 3 33 33 H 1.08998 * 113.61337 * 254.52829 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2249 0.7603 5 1 2.5764 -1.4046 1.6886 6 6 4.6474 -1.2553 0.9241 7 6 4.5682 -2.7660 0.6476 8 1 5.3754 -3.1373 0.0163 9 7 4.3719 -3.5739 1.8539 10 6 4.7729 -4.8604 1.8761 11 8 5.2974 -5.3509 0.8943 12 6 4.5763 -5.6719 3.0881 13 6 3.9991 -5.1957 4.2240 14 16 3.9330 -6.4054 5.4229 15 6 4.7011 -7.5883 4.3783 16 6 5.0059 -9.0108 4.7714 17 8 6.4214 -9.2063 4.7922 18 14 4.3073 -9.3504 6.4647 19 6 4.9814 -7.0540 3.1957 20 6 3.2667 -2.4777 -0.1191 21 1 2.9709 0.9066 0.4854 22 1 2.9714 -0.0316 -1.0272 23 1 4.9834 -1.0130 1.9323 24 1 5.1816 -0.6981 0.1546 25 1 3.9534 -3.1828 2.6367 26 1 3.6315 -4.1879 4.3488 27 1 4.5556 -9.6917 4.0492 28 1 6.8887 -8.6320 5.4141 29 1 2.8402 -9.1198 6.4645 30 1 4.6017 -10.7500 6.8643 31 1 5.4603 -7.5981 2.3950 32 1 3.4221 -2.2545 -1.1746 33 1 2.4880 -3.2222 0.0469 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534922_6894386.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:50 Heat of formation + Delta-G solvation = 16.803599 kcal Electronic energy + Delta-G solvation = -18419.518021 eV Core-core repulsion = 15346.403541 eV Total energy + Delta-G solvation = -3073.114479 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52988 -39.98686 -38.70233 -37.44918 -37.07735 -34.73572 -32.07774 -30.96882 -27.01272 -26.92178 -26.14823 -24.22208 -22.26646 -20.64445 -20.51170 -19.04121 -18.71075 -18.09823 -17.65437 -16.97044 -16.45212 -16.25346 -16.14393 -15.71703 -15.54282 -15.24569 -14.76619 -14.37923 -14.16759 -14.04704 -13.90521 -13.71235 -13.61914 -13.50614 -13.20463 -12.70804 -12.58537 -12.28978 -12.17237 -11.95965 -11.68904 -11.39152 -10.95680 -10.63851 -10.19462 -10.05737 -9.54942 -5.24990 -0.41752 0.28684 0.63754 0.86579 1.14198 1.52298 1.77535 1.82245 1.83353 1.99793 2.30199 2.86092 3.24986 3.29011 3.40378 3.52479 3.64295 3.67361 3.78410 3.90378 4.04706 4.22447 4.31158 4.36509 4.40281 4.53447 4.55100 4.65554 4.70765 4.85422 4.87633 4.95866 5.02553 5.17599 5.46789 6.37691 6.43380 6.59533 7.15682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.202 3.798 3 C -0.017 4.017 4 C -0.111 4.111 5 H 0.096 0.904 6 C -0.136 4.136 7 C 0.120 3.880 8 H 0.109 0.891 9 N -0.710 5.710 10 C 0.581 3.419 11 O -0.528 6.528 12 C -0.156 4.156 13 C -0.206 4.206 14 S 0.197 5.803 15 C -0.244 4.244 16 C -0.026 4.026 17 O -0.533 6.533 18 Si 0.656 3.344 19 C -0.053 4.053 20 C -0.150 4.150 21 H 0.113 0.887 22 H 0.112 0.888 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.399 0.601 26 H 0.171 0.829 27 H 0.125 0.875 28 H 0.381 0.619 29 H -0.237 1.237 30 H -0.232 1.232 31 H 0.157 0.843 32 H 0.099 0.901 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 3.904 4.796 7.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.116 4.116 3 C -0.057 4.057 4 C -0.130 4.130 5 H 0.115 0.885 6 C -0.174 4.174 7 C 0.015 3.985 8 H 0.127 0.873 9 N -0.362 5.362 10 C 0.367 3.633 11 O -0.405 6.405 12 C -0.175 4.175 13 C -0.344 4.344 14 S 0.464 5.536 15 C -0.360 4.360 16 C -0.139 4.139 17 O -0.339 6.339 18 Si 0.555 3.445 19 C -0.082 4.082 20 C -0.189 4.189 21 H 0.131 0.869 22 H 0.130 0.870 23 H 0.098 0.902 24 H 0.123 0.877 25 H 0.234 0.766 26 H 0.188 0.812 27 H 0.142 0.858 28 H 0.228 0.772 29 H -0.162 1.162 30 H -0.155 1.155 31 H 0.174 0.826 32 H 0.117 0.883 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.777 2.566 5.600 6.208 hybrid contribution 0.537 0.499 -1.716 1.866 sum 1.313 3.065 3.884 5.119 Atomic orbital electron populations 1.81298 1.13159 1.08318 1.08393 1.29230 0.95352 0.93465 0.93529 1.19343 0.81660 1.00757 1.03948 1.22630 0.96732 0.94044 0.99631 0.88541 1.23387 0.94967 0.95274 1.03805 1.21824 0.98897 0.90798 0.87026 0.87277 1.45502 1.62883 1.11354 1.16451 1.17599 0.77694 0.81216 0.86754 1.90832 1.42750 1.71448 1.35477 1.20231 1.07009 0.95482 0.94744 1.25788 1.04854 1.05273 0.98472 1.83062 1.56347 0.99408 1.14814 1.24798 1.10651 1.01561 0.99006 1.24448 0.87003 0.91495 1.10961 1.86549 1.16555 1.64111 1.66646 0.95152 0.82343 0.87596 0.79437 1.21053 0.97789 0.92187 0.97160 1.23600 0.98353 0.97222 0.99741 0.86895 0.86984 0.90175 0.87683 0.76578 0.81175 0.85834 0.77161 1.16152 1.15533 0.82593 0.88292 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -1.75 18.54 42.16 0.78 -0.97 16 2 C 0.20 -0.04 15.42 -20.76 -0.32 -0.36 16 3 C -0.02 0.09 5.54 -29.52 -0.16 -0.08 16 4 C -0.11 0.53 3.49 -89.81 -0.31 0.22 16 5 H 0.10 -0.45 8.12 -51.93 -0.42 -0.87 16 6 C -0.14 0.72 7.39 -25.91 -0.19 0.53 16 7 C 0.12 -0.28 4.33 -67.11 -0.29 -0.57 16 8 H 0.11 -0.05 7.46 -51.93 -0.39 -0.44 16 9 N -0.71 1.19 5.23 -54.16 -0.28 0.90 16 10 C 0.58 1.08 7.79 -12.63 -0.10 0.98 16 11 O -0.53 -3.12 16.40 5.24 0.09 -3.04 16 12 C -0.16 -0.09 5.98 -104.63 -0.63 -0.71 16 13 C -0.21 0.43 10.38 29.93 0.31 0.74 16 14 S 0.20 -0.45 20.20 -107.50 -2.17 -2.62 16 15 C -0.24 0.11 5.65 -36.18 -0.20 -0.09 16 16 C -0.03 0.02 2.94 36.01 0.11 0.13 16 17 O -0.53 0.12 12.88 -35.23 -0.45 -0.34 16 18 Si 0.66 -1.17 30.92 -169.99 -5.26 -6.43 16 19 C -0.05 -0.07 9.95 -39.02 -0.39 -0.45 16 20 C -0.15 0.44 7.43 -25.92 -0.19 0.24 16 21 H 0.11 -0.80 8.14 -51.93 -0.42 -1.22 16 22 H 0.11 -0.75 7.84 -51.93 -0.41 -1.15 16 23 H 0.08 -0.45 8.14 -51.93 -0.42 -0.88 16 24 H 0.10 -0.68 8.10 -51.93 -0.42 -1.10 16 25 H 0.40 -1.72 7.20 -40.82 -0.29 -2.02 16 26 H 0.17 -0.87 7.01 -52.49 -0.37 -1.24 16 27 H 0.12 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.38 -1.60 8.70 45.56 0.40 -1.20 16 29 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 30 H -0.23 -0.25 7.11 56.52 0.40 0.15 16 31 H 0.16 0.36 8.06 -52.48 -0.42 -0.07 16 32 H 0.10 -0.37 7.90 -51.93 -0.41 -0.78 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 LS Contribution 307.44 15.07 4.63 4.63 Total: 0.00 -10.04 307.44 -8.65 -18.69 By element: Atomic # 1 Polarization: -7.80 SS G_CDS: -3.61 Total: -11.42 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.37 Total: 0.58 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: 0.50 Total: -0.07 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.37 Total: -3.37 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -5.26 Total: -6.43 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -2.17 Total: -2.62 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -10.04 -8.65 -18.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_6894386.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.493 kcal (2) G-P(sol) polarization free energy of solvation -10.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds