Wall clock time and date at job start Tue Mar 9 2021 13:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47125 * 116.63204 * 3 2 1 5 5 H 1.09000 * 112.90908 * 43.75238 * 4 3 2 6 6 C 1.54049 * 113.70090 * 272.42291 * 4 3 2 7 7 C 1.53781 * 87.08031 * 220.05426 * 6 4 3 8 8 H 1.08998 * 113.61680 * 139.97346 * 7 6 4 9 9 N 1.46505 * 113.61146 * 270.88055 * 7 6 4 10 10 C 1.34776 * 119.99597 * 252.49455 * 9 7 6 11 11 O 1.21275 * 120.00338 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99715 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.46962 * 179.97438 * 12 10 9 14 14 C 1.36827 * 125.06370 * 264.69348 * 13 12 10 15 15 C 1.34238 * 109.93777 * 179.81465 * 14 13 12 16 16 C 1.50703 * 126.49700 * 180.16736 * 15 14 13 17 17 O 1.42900 * 109.46984 * 105.32231 * 16 15 14 18 18 Si 1.86292 * 109.47488 * 345.31794 * 16 15 14 19 19 C 1.46489 * 106.99988 * 0.43657 * 15 14 13 20 20 C 1.39591 * 134.03506 * 179.76098 * 19 15 14 21 21 C 1.36665 * 119.76410 * 179.97438 * 20 19 15 22 22 C 1.38784 * 120.52617 * 359.97438 * 21 20 19 23 23 C 1.37796 * 120.66735 * 0.02562 * 22 21 20 24 24 C 1.37697 * 125.06003 * 84.99642 * 13 12 10 25 25 C 1.53781 * 87.08070 * 25.42738 * 7 6 4 26 26 H 1.09007 * 109.46719 * 356.63554 * 3 2 1 27 27 H 1.08994 * 109.46928 * 236.63836 * 3 2 1 28 28 H 1.09005 * 113.62125 * 105.50470 * 6 4 3 29 29 H 1.09003 * 113.61268 * 334.60257 * 6 4 3 30 30 H 0.96995 * 120.00170 * 72.49954 * 9 7 6 31 31 H 1.09000 * 109.46532 * 299.99611 * 12 10 9 32 32 H 1.08993 * 109.47264 * 60.00029 * 12 10 9 33 33 H 1.08003 * 125.03055 * 359.96390 * 14 13 12 34 34 H 1.09005 * 109.47108 * 225.31776 * 16 15 14 35 35 H 0.96701 * 113.99993 * 299.99610 * 17 16 15 36 36 H 1.48500 * 110.00307 * 180.02562 * 18 16 15 37 37 H 1.48507 * 109.99982 * 301.32030 * 18 16 15 38 38 H 1.08005 * 120.11589 * 359.97438 * 20 19 15 39 39 H 1.07999 * 119.73410 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.66838 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.10720 * 179.97438 * 23 22 21 42 42 H 1.09002 * 113.61445 * 89.11830 * 25 7 6 43 43 H 1.09002 * 113.61408 * 219.93560 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6475 -1.2894 5 1 2.5750 1.5556 -1.5518 6 6 3.2683 -0.3416 -2.4607 7 6 4.5690 0.3983 -2.8153 8 1 5.3767 -0.2636 -3.1277 9 7 4.3717 1.5274 -3.7277 10 6 4.7739 1.4352 -5.0107 11 8 5.2986 0.4174 -5.4101 12 6 4.5715 2.5969 -5.9492 13 7 5.0895 2.2497 -7.2748 14 6 6.3393 2.5610 -7.7366 15 6 6.4949 2.0947 -8.9858 16 6 7.7263 2.2261 -9.8447 17 8 8.4027 0.9687 -9.9030 18 14 8.8612 3.5084 -9.1111 19 6 5.2386 1.4397 -9.3581 20 6 4.7899 0.7822 -10.5048 21 6 3.5255 0.2646 -10.5391 22 6 2.6837 0.3869 -9.4425 23 6 3.1064 1.0320 -8.3006 24 6 4.3890 1.5667 -8.2438 25 6 4.6464 0.8086 -1.3352 26 1 2.9718 -1.0252 0.0603 27 1 2.9711 0.5659 0.8583 28 1 2.4901 -0.2439 -3.2177 29 1 3.4250 -1.3728 -2.1441 30 1 3.9517 2.3414 -3.4084 31 1 3.5078 2.8237 -6.0222 32 1 5.1036 3.4685 -5.5684 33 1 7.0903 3.0997 -7.1779 34 1 7.4368 2.5300 -10.8507 35 1 8.6898 0.6362 -9.0416 36 1 10.0792 3.6479 -9.9492 37 1 8.1588 4.8134 -9.0155 38 1 5.4396 0.6829 -11.3618 39 1 3.1790 -0.2444 -11.4263 40 1 1.6874 -0.0277 -9.4845 41 1 2.4436 1.1224 -7.4526 42 1 5.1799 0.0919 -0.7108 43 1 4.9821 1.8344 -1.1835 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534922_9818708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:59 Heat of formation + Delta-G solvation = 54.467780 kcal Electronic energy + Delta-G solvation = -26702.918230 eV Core-core repulsion = 22909.331315 eV Total energy + Delta-G solvation = -3793.586914 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53183 -41.17904 -39.54472 -38.09944 -37.62541 -37.42674 -34.68666 -33.98076 -31.64748 -30.93016 -30.23930 -28.82625 -26.57252 -25.89676 -24.36302 -23.68906 -22.75272 -21.80770 -20.66500 -20.21317 -18.87703 -18.47906 -18.18647 -17.70352 -17.27591 -16.76119 -16.43196 -16.30881 -16.06921 -15.85994 -15.72769 -15.36949 -15.25924 -14.90334 -14.71463 -14.56778 -14.29864 -14.06287 -14.00853 -13.77720 -13.62102 -13.35299 -13.16457 -13.01425 -12.73202 -12.58083 -12.32661 -12.22892 -12.11407 -11.84955 -11.81302 -11.42218 -11.10277 -11.07277 -10.55809 -10.29048 -10.04352 -9.16878 -8.62976 -4.98207 0.12846 0.61729 1.38424 1.42388 1.50548 1.70263 1.72134 1.84372 1.89155 2.02263 2.25785 2.92760 3.10398 3.57457 3.58960 3.68412 3.68969 3.73834 3.76087 3.89143 3.96010 4.01149 4.05330 4.17143 4.20195 4.29082 4.44816 4.48000 4.54974 4.70759 4.70886 4.77643 4.80032 4.86824 4.89888 4.96532 4.99319 5.11745 5.14188 5.22694 5.31574 5.48548 5.63966 5.68356 5.71873 5.74516 6.19952 6.24164 6.53199 6.68970 6.84051 7.20682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.233 3.767 3 C -0.016 4.016 4 C -0.100 4.100 5 H 0.100 0.900 6 C -0.158 4.158 7 C 0.109 3.891 8 H 0.082 0.918 9 N -0.696 5.696 10 C 0.494 3.506 11 O -0.569 6.569 12 C 0.086 3.914 13 N -0.466 5.466 14 C 0.082 3.918 15 C -0.226 4.226 16 C -0.048 4.048 17 O -0.564 6.564 18 Si 0.798 3.202 19 C -0.118 4.118 20 C -0.091 4.091 21 C -0.154 4.154 22 C -0.110 4.110 23 C -0.134 4.134 24 C 0.091 3.909 25 C -0.114 4.114 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.419 0.581 31 H 0.137 0.863 32 H 0.168 0.832 33 H 0.211 0.789 34 H 0.090 0.910 35 H 0.391 0.609 36 H -0.302 1.302 37 H -0.274 1.274 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 5.058 9.236 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C -0.083 4.083 3 C -0.055 4.055 4 C -0.119 4.119 5 H 0.118 0.882 6 C -0.196 4.196 7 C 0.003 3.997 8 H 0.101 0.899 9 N -0.349 5.349 10 C 0.280 3.720 11 O -0.446 6.446 12 C -0.039 4.039 13 N -0.149 5.149 14 C -0.044 4.044 15 C -0.233 4.233 16 C -0.157 4.157 17 O -0.372 6.372 18 Si 0.702 3.298 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.173 4.173 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.014 4.014 25 C -0.152 4.152 26 H 0.151 0.849 27 H 0.163 0.837 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.257 0.743 31 H 0.155 0.845 32 H 0.185 0.815 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.240 0.760 36 H -0.230 1.230 37 H -0.201 1.201 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.560 5.252 8.533 10.342 hybrid contribution -0.708 -0.319 -0.860 1.159 sum 1.852 4.932 7.673 9.308 Atomic orbital electron populations 1.81325 1.15926 1.11391 1.11142 1.30161 0.96184 0.90982 0.90973 1.19733 0.78192 1.06404 1.01212 1.22599 0.97489 0.99020 0.92820 0.88171 1.23698 0.97513 1.00114 0.98312 1.21889 0.98092 0.88876 0.90843 0.89942 1.45517 1.61653 1.18702 1.09017 1.21348 0.77776 0.89356 0.83538 1.90805 1.44158 1.32892 1.76782 1.22000 1.05097 0.97321 0.79439 1.43449 1.12023 1.47783 1.11625 1.22104 0.87199 1.00698 0.94356 1.20803 0.96174 1.09193 0.97139 1.24725 0.94628 0.94870 1.01478 1.86442 1.76685 1.37683 1.36381 0.93974 0.74887 0.74172 0.86755 1.19394 0.94848 1.03170 0.94806 1.20449 0.96260 0.97415 0.96843 1.20899 0.94111 1.02452 0.99865 1.21110 1.00508 0.98771 0.92498 1.20227 0.93364 1.02008 0.99821 1.18364 0.94498 0.99165 0.89417 1.23312 0.94162 1.04770 0.92971 0.84923 0.83737 0.93199 0.88109 0.74276 0.84512 0.81475 0.77229 0.89203 0.75999 1.23008 1.20057 0.86582 0.84722 0.83895 0.85144 0.86270 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -4.09 18.54 20.01 0.37 -3.72 16 2 C 0.23 -0.51 15.42 89.44 1.38 0.87 16 3 C -0.02 0.23 5.54 28.79 0.16 0.39 16 4 C -0.10 1.39 3.50 -10.18 -0.04 1.35 16 5 H 0.10 -1.40 8.12 -2.39 -0.02 -1.42 16 6 C -0.16 1.33 7.44 31.21 0.23 1.56 16 7 C 0.11 -0.95 4.32 45.52 0.20 -0.75 16 8 H 0.08 -0.25 7.47 -2.39 -0.02 -0.27 16 9 N -0.70 7.02 5.26 -440.03 -2.32 4.71 16 10 C 0.49 -1.68 7.90 87.66 0.69 -0.99 16 11 O -0.57 -4.74 16.02 -3.01 -0.05 -4.78 16 12 C 0.09 -0.74 6.48 85.63 0.56 -0.18 16 13 N -0.47 -0.37 2.27 -520.00 -1.18 -1.55 16 14 C 0.08 -0.03 9.89 83.00 0.82 0.79 16 15 C -0.23 -1.22 5.58 -18.62 -0.10 -1.33 16 16 C -0.05 -0.19 3.06 71.24 0.22 0.02 16 17 O -0.56 -3.45 12.88 -148.98 -1.92 -5.37 16 18 Si 0.80 -1.57 30.75 68.60 2.11 0.54 16 19 C -0.12 -1.23 6.35 -20.20 -0.13 -1.36 16 20 C -0.09 -0.98 10.05 22.23 0.22 -0.75 16 21 C -0.15 -1.22 9.97 22.03 0.22 -1.00 16 22 C -0.11 -0.67 10.01 22.30 0.22 -0.45 16 23 C -0.13 -0.81 10.00 22.37 0.22 -0.59 16 24 C 0.09 0.68 6.80 39.03 0.27 0.94 16 25 C -0.11 1.83 7.38 31.12 0.23 2.06 16 26 H 0.13 -2.33 7.85 -2.38 -0.02 -2.34 16 27 H 0.14 -2.82 8.14 -2.39 -0.02 -2.84 16 28 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 29 H 0.10 -0.92 7.90 -2.39 -0.02 -0.94 16 30 H 0.42 -7.12 8.70 -92.71 -0.81 -7.93 16 31 H 0.14 -1.69 8.14 -2.39 -0.02 -1.71 16 32 H 0.17 -2.92 8.11 -2.39 -0.02 -2.94 16 33 H 0.21 -2.05 6.34 -2.91 -0.02 -2.07 16 34 H 0.09 0.60 7.96 -2.38 -0.02 0.58 16 35 H 0.39 -0.61 8.70 -74.06 -0.64 -1.25 16 36 H -0.30 -1.77 7.11 99.48 0.71 -1.07 16 37 H -0.27 -0.31 7.11 99.48 0.71 0.40 16 38 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.13 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.14 0.17 8.06 -2.91 -0.02 0.15 16 41 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.12 -2.17 8.10 -2.39 -0.02 -2.19 16 43 H 0.10 -1.75 8.14 -2.39 -0.02 -1.77 16 Total: 0.00 -37.60 373.69 2.03 -35.57 By element: Atomic # 1 Polarization: -25.63 SS G_CDS: -0.36 Total: -25.99 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.37 Total: 0.58 kcal Atomic # 7 Polarization: 2.57 SS G_CDS: -3.12 Total: -0.56 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.97 Total: -10.15 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.11 Total: 0.54 kcal Total: -37.60 2.03 -35.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534922_9818708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.041 kcal (2) G-P(sol) polarization free energy of solvation -37.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds