Wall clock time and date at job start Tue Mar 9 2021 13:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81407 * 102.99910 * 2 1 4 4 C 1.53004 * 109.46878 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.90365 * 43.74949 * 4 3 2 6 6 C 1.53777 * 113.61051 * 174.99770 * 4 3 2 7 7 C 1.53784 * 87.08100 * 139.98647 * 6 4 3 8 8 H 1.08996 * 113.61576 * 219.94231 * 7 6 4 9 9 N 1.46492 * 113.61822 * 89.11418 * 7 6 4 10 10 C 1.34779 * 120.00462 * 155.00536 * 9 7 6 11 11 O 1.21696 * 119.99388 * 359.97438 * 10 9 7 12 12 C 1.46674 * 120.00361 * 180.02562 * 10 9 7 13 13 C 1.37877 * 126.23342 * 180.32852 * 12 10 9 14 14 C 1.50703 * 126.45699 * 359.95445 * 13 12 10 15 15 C 1.39834 * 107.08208 * 180.12037 * 13 12 10 16 16 C 1.50706 * 126.06357 * 179.83835 * 15 13 12 17 17 O 1.42896 * 109.47323 * 308.82254 * 16 15 13 18 18 Si 1.86299 * 109.46959 * 68.82326 * 16 15 13 19 19 C 1.35445 * 107.86828 * 359.57866 * 15 13 12 20 20 C 1.50699 * 125.56746 * 180.28720 * 19 15 13 21 21 N 1.35541 * 108.87241 * 0.26271 * 19 15 13 22 22 C 1.53777 * 113.61759 * 272.49827 * 4 3 2 23 23 H 1.08994 * 109.47623 * 300.00400 * 1 2 3 24 24 H 1.09008 * 109.46844 * 60.00503 * 1 2 3 25 25 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47048 * 59.99672 * 3 2 1 27 27 H 1.08994 * 109.46836 * 299.99782 * 3 2 1 28 28 H 1.08995 * 113.61650 * 25.43606 * 6 4 3 29 29 H 1.08997 * 113.61365 * 254.53092 * 6 4 3 30 30 H 0.97006 * 120.00009 * 335.00063 * 9 7 6 31 31 H 1.08997 * 109.47085 * 270.19445 * 14 13 12 32 32 H 1.09000 * 109.46973 * 30.19433 * 14 13 12 33 33 H 1.08990 * 109.47025 * 150.19461 * 14 13 12 34 34 H 1.08997 * 109.46662 * 188.81718 * 16 15 13 35 35 H 0.96700 * 114.00030 * 179.97438 * 17 16 15 36 36 H 1.48503 * 110.00157 * 293.90868 * 18 16 15 37 37 H 1.48501 * 110.00395 * 55.22545 * 18 16 15 38 38 H 1.09006 * 109.47300 * 92.90573 * 20 19 15 39 39 H 1.08999 * 109.47412 * 212.90849 * 20 19 15 40 40 H 1.09007 * 109.46704 * 332.91109 * 20 19 15 41 41 H 0.96999 * 125.68037 * 180.02562 * 21 19 15 42 42 H 1.09000 * 113.61617 * 105.47173 * 22 4 3 43 43 H 1.09004 * 113.61114 * 334.56950 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2458 1.2670 -0.6934 6 6 4.1962 3.4041 -0.1222 7 6 5.2868 3.0703 0.9094 8 1 5.4515 3.8605 1.6419 9 7 6.5310 2.5812 0.3106 10 6 7.6977 2.7227 0.9705 11 8 7.7174 3.2573 2.0636 12 6 8.9436 2.2335 0.3707 13 6 10.2011 2.3050 0.9316 14 6 10.5516 2.8996 2.2713 15 6 11.0904 1.7253 0.0214 16 6 12.5794 1.5819 0.2046 17 8 13.1391 2.8466 0.5640 18 14 12.9227 0.3446 1.5544 19 6 10.3753 1.3104 -1.0515 20 6 10.9394 0.6235 -2.2684 21 7 9.0694 1.6133 -0.8517 22 6 4.3608 1.9485 1.4085 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8030 2.2372 0.8899 27 1 1.8031 2.2371 -0.8900 28 1 3.4590 4.1215 0.2384 29 1 4.5894 3.6582 -1.1065 30 1 6.5153 2.1554 -0.5608 31 1 10.7789 3.9588 2.1504 32 1 9.7080 2.7844 2.9518 33 1 11.4214 2.3858 2.6804 34 1 13.0284 1.2373 -0.7269 35 1 14.0965 2.8290 0.6986 36 1 12.4445 0.8699 2.8585 37 1 12.2484 -0.9424 1.2473 38 1 10.8843 -0.4569 -2.1342 39 1 10.3625 0.9103 -3.1477 40 1 11.9796 0.9202 -2.4036 41 1 8.3441 1.4241 -1.4674 42 1 4.8868 1.0276 1.6600 43 1 3.6685 2.2680 2.1876 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_12297754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:18 Heat of formation + Delta-G solvation = -6.679865 kcal Electronic energy + Delta-G solvation = -23693.987355 eV Core-core repulsion = 20254.156361 eV Total energy + Delta-G solvation = -3439.830994 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.80678 -41.17208 -39.38240 -37.61243 -35.05161 -33.89259 -33.04793 -30.73104 -29.71136 -29.32838 -27.60239 -26.80837 -26.44598 -24.00434 -22.76529 -20.92531 -20.53624 -19.93621 -19.47260 -18.20424 -17.52267 -17.05853 -16.98724 -16.56738 -16.27125 -15.83673 -15.57624 -15.19500 -15.13294 -15.10567 -14.78508 -14.44807 -14.35726 -14.22684 -13.98253 -13.92092 -13.67435 -13.63177 -13.41213 -13.29261 -13.24466 -12.92424 -12.69685 -12.44822 -12.18837 -11.80206 -11.60826 -11.33044 -11.19230 -10.95117 -10.55781 -10.32689 -9.60485 -9.12103 -8.75661 -4.93327 0.20420 0.68463 1.14284 1.57423 1.62287 1.71888 1.79136 1.97438 2.07357 2.16808 3.33659 3.46238 3.54899 3.61714 3.66719 3.74354 3.78414 3.96359 4.15743 4.20434 4.25783 4.28061 4.30963 4.34460 4.42838 4.45304 4.49126 4.64099 4.68065 4.69038 4.71213 4.73153 4.82397 4.85106 4.92215 4.93826 4.98168 5.05551 5.08226 5.16772 5.43717 5.55149 5.71554 6.23306 6.39839 6.95677 7.05830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.326 6.326 3 C -0.062 4.062 4 C -0.087 4.087 5 H 0.097 0.903 6 C -0.117 4.117 7 C 0.112 3.888 8 H 0.089 0.911 9 N -0.699 5.699 10 C 0.591 3.409 11 O -0.564 6.564 12 C -0.084 4.084 13 C -0.075 4.075 14 C -0.087 4.087 15 C -0.202 4.202 16 C -0.024 4.024 17 O -0.563 6.563 18 Si 0.750 3.250 19 C 0.092 3.908 20 C -0.097 4.097 21 N -0.519 5.519 22 C -0.143 4.143 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.408 0.592 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.400 0.600 36 H -0.301 1.301 37 H -0.304 1.304 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.433 0.567 42 H 0.055 0.945 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.373 -1.602 -7.825 7.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.100 6.100 3 C -0.209 4.209 4 C -0.106 4.106 5 H 0.115 0.885 6 C -0.156 4.156 7 C 0.006 3.994 8 H 0.107 0.893 9 N -0.350 5.350 10 C 0.380 3.620 11 O -0.443 6.443 12 C -0.195 4.195 13 C -0.084 4.084 14 C -0.143 4.143 15 C -0.207 4.207 16 C -0.135 4.135 17 O -0.373 6.373 18 Si 0.658 3.342 19 C -0.028 4.028 20 C -0.154 4.154 21 N -0.118 5.118 22 C -0.182 4.182 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.245 0.755 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.251 0.749 36 H -0.230 1.230 37 H -0.232 1.232 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.274 0.726 42 H 0.074 0.926 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.120 -2.433 -6.566 7.003 hybrid contribution -1.922 0.845 -0.378 2.133 sum -2.041 -1.588 -6.944 7.410 Atomic orbital electron populations 1.23403 0.91600 1.07179 1.05786 1.87225 1.10427 1.14175 1.98197 1.23421 0.99146 0.92405 1.05969 1.22309 0.92623 0.97954 0.97707 0.88501 1.23342 0.96624 0.95914 0.99752 1.21909 0.82755 0.97288 0.97397 0.89271 1.45380 1.05769 1.61470 1.22399 1.17133 0.82508 0.78078 0.84293 1.90813 1.86576 1.45312 1.21606 1.19938 0.94716 1.13956 0.90907 1.20026 0.91311 0.99917 0.97159 1.20347 1.01087 1.00352 0.92553 1.18909 0.95358 1.10383 0.96091 1.23932 0.89433 0.92863 1.07269 1.86486 1.28439 1.30071 1.92265 0.96042 0.89258 0.73456 0.75483 1.20847 0.82780 1.01087 0.98114 1.20725 1.02982 1.00378 0.91340 1.41734 1.08930 1.45566 1.15597 1.23504 0.98503 0.98667 0.97500 0.89735 0.89442 0.87787 0.89161 0.88524 0.86850 0.89115 0.75532 0.91522 0.92402 0.91628 0.88065 0.74941 1.22951 1.23216 0.88916 0.88897 0.87932 0.72564 0.92588 0.88354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.32 10.76 113.37 1.22 1.54 16 2 S -0.33 -0.62 22.37 -56.49 -1.26 -1.89 16 3 C -0.06 0.22 5.78 71.98 0.42 0.63 16 4 C -0.09 0.33 3.53 -10.27 -0.04 0.30 16 5 H 0.10 -0.35 8.13 -2.39 -0.02 -0.37 16 6 C -0.12 0.67 7.39 31.12 0.23 0.90 16 7 C 0.11 0.08 4.32 45.52 0.20 0.27 16 8 H 0.09 0.46 7.46 -2.39 -0.02 0.45 16 9 N -0.70 -0.97 5.26 -444.00 -2.33 -3.31 16 10 C 0.59 5.85 7.79 86.45 0.67 6.52 16 11 O -0.56 -10.19 14.41 -4.33 -0.06 -10.25 16 12 C -0.08 -0.71 7.06 40.35 0.28 -0.42 16 13 C -0.08 -0.90 5.88 -19.56 -0.12 -1.01 16 14 C -0.09 -1.23 9.14 71.24 0.65 -0.58 16 15 C -0.20 -1.29 4.43 -20.12 -0.09 -1.38 16 16 C -0.02 -0.02 2.78 71.24 0.20 0.18 16 17 O -0.56 -1.05 12.35 -148.98 -1.84 -2.89 16 18 Si 0.75 1.22 31.49 68.60 2.16 3.38 16 19 C 0.09 0.07 7.13 41.34 0.29 0.37 16 20 C -0.10 0.75 10.17 71.24 0.72 1.48 16 21 N -0.52 -0.05 5.99 -171.93 -1.03 -1.08 16 22 C -0.14 -0.03 7.43 31.12 0.23 0.20 16 23 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 25 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.09 -0.40 7.84 -2.39 -0.02 -0.42 16 27 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.11 -0.87 8.10 -2.39 -0.02 -0.89 16 29 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 30 H 0.41 -2.07 7.83 -92.70 -0.73 -2.80 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.01 6.50 -2.39 -0.02 0.99 16 33 H 0.07 0.88 4.99 -2.39 -0.01 0.87 16 34 H 0.10 -0.60 6.47 -2.39 -0.02 -0.61 16 35 H 0.40 -3.54 8.74 -74.06 -0.65 -4.19 16 36 H -0.30 -3.17 5.75 99.48 0.57 -2.60 16 37 H -0.30 -2.47 7.11 99.48 0.71 -1.76 16 38 H 0.09 -0.85 8.14 -2.38 -0.02 -0.87 16 39 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 40 H 0.10 -0.98 6.86 -2.38 -0.02 -0.99 16 41 H 0.43 -3.35 8.19 -92.71 -0.76 -4.11 16 42 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.10 -0.04 7.90 -2.38 -0.02 -0.06 16 Total: 0.00 -26.10 360.59 -0.67 -26.77 By element: Atomic # 1 Polarization: -18.53 SS G_CDS: -1.18 Total: -19.71 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.88 Total: 8.98 kcal Atomic # 7 Polarization: -1.03 SS G_CDS: -3.37 Total: -4.39 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -1.90 Total: -13.14 kcal Atomic # 14 Polarization: 1.22 SS G_CDS: 2.16 Total: 3.38 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -1.26 Total: -1.89 kcal Total: -26.10 -0.67 -26.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12297754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.092 kcal (2) G-P(sol) polarization free energy of solvation -26.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds