Wall clock time and date at job start Tue Mar 9 2021 13:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35664 * 116.99752 * 2 1 4 4 C 1.38403 * 120.12106 * 359.97438 * 3 2 1 5 5 C 1.38723 * 120.03097 * 179.97438 * 4 3 2 6 6 O 1.35722 * 119.86371 * 180.02562 * 5 4 3 7 7 C 1.42898 * 116.99591 * 359.97438 * 6 5 4 8 8 C 1.39143 * 120.27302 * 0.02562 * 5 4 3 9 9 C 1.50703 * 119.87917 * 179.97438 * 8 5 4 10 10 O 1.42905 * 109.47264 * 284.99843 * 9 8 5 11 11 Si 1.86299 * 109.47187 * 164.99986 * 9 8 5 12 12 C 1.37578 * 120.24432 * 0.27335 * 8 5 4 13 13 C 1.39823 * 119.96268 * 359.47298 * 12 8 5 14 14 C 1.47302 * 120.13851 * 180.27296 * 13 12 8 15 15 O 1.21620 * 119.99736 * 180.22926 * 14 13 12 16 16 N 1.34770 * 119.99801 * 0.23538 * 14 13 12 17 17 C 1.46503 * 119.99887 * 179.97438 * 16 14 13 18 18 H 1.09001 * 112.84999 * 23.80215 * 17 16 14 19 19 C 1.53780 * 113.61456 * 154.99321 * 17 16 14 20 20 C 1.53790 * 87.07973 * 89.11805 * 19 17 16 21 21 H 1.09002 * 113.61146 * 270.88124 * 20 19 17 22 22 C 1.52996 * 113.61579 * 140.06346 * 20 19 17 23 23 S 1.81397 * 109.47101 * 175.00055 * 22 20 19 24 24 C 1.81397 * 102.99933 * 180.02562 * 23 22 20 25 25 C 1.53773 * 113.61525 * 252.49402 * 17 16 14 26 26 H 1.09000 * 109.47007 * 300.00470 * 1 2 3 27 27 H 1.09006 * 109.46964 * 60.00192 * 1 2 3 28 28 H 1.09000 * 109.47149 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.98441 * 359.97438 * 4 3 2 30 30 H 1.08990 * 109.47256 * 59.99691 * 7 6 5 31 31 H 1.09005 * 109.46735 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.46708 * 299.99249 * 7 6 5 33 33 H 1.09004 * 109.47113 * 44.99842 * 9 8 5 34 34 H 0.96702 * 113.99404 * 300.00033 * 10 9 8 35 35 H 1.48504 * 109.99873 * 180.02562 * 11 9 8 36 36 H 1.48505 * 109.99870 * 301.31580 * 11 9 8 37 37 H 1.07998 * 120.02585 * 179.72787 * 12 8 5 38 38 H 0.97001 * 120.00090 * 359.97438 * 16 14 13 39 39 H 1.09004 * 113.61693 * 203.66107 * 19 17 16 40 40 H 1.09001 * 113.61841 * 334.57545 * 19 17 16 41 41 H 1.08997 * 109.47393 * 295.00094 * 22 20 19 42 42 H 1.09007 * 109.47229 * 54.99813 * 22 20 19 43 43 H 1.09002 * 109.47613 * 180.02562 * 24 23 22 44 44 H 1.09004 * 109.47343 * 300.00205 * 24 23 22 45 45 H 1.09002 * 109.47831 * 59.99925 * 24 23 22 46 46 H 1.08998 * 113.61707 * 25.43188 * 25 17 16 47 47 H 1.08999 * 113.61863 * 156.33400 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2935 2.3711 -0.0005 5 6 1.9251 3.6062 0.0000 6 8 1.1850 4.7438 0.0000 7 6 -0.2360 4.5931 -0.0011 8 6 3.3144 3.6835 0.0005 9 6 3.9914 5.0299 0.0005 10 8 3.8944 5.6119 -1.3010 11 14 5.7860 4.8227 0.4559 12 6 4.0724 2.5353 -0.0051 13 6 3.4462 1.2852 -0.0003 14 6 4.2539 0.0534 -0.0003 15 8 3.7066 -1.0327 -0.0003 16 7 5.5995 0.1300 -0.0001 17 6 6.4029 -1.0951 0.0005 18 1 5.8665 -1.9532 -0.4046 19 6 7.8086 -0.9102 -0.5950 20 6 8.2749 -0.5403 0.8231 21 1 8.1890 0.5229 1.0474 22 6 9.6450 -1.1155 1.1873 23 16 10.1490 -0.4929 2.8148 24 6 11.7679 -1.2716 3.0662 25 6 7.0949 -1.3773 1.3444 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2149 2.3165 -0.0014 30 1 -0.5438 4.0434 0.8882 31 1 -0.7057 5.5768 -0.0006 32 1 -0.5424 4.0444 -0.8917 33 1 3.5051 5.6811 0.7269 34 1 4.3070 5.0850 -1.9991 35 1 6.4647 6.1435 0.4600 36 1 5.9005 4.1892 1.7942 37 1 5.1504 2.5995 -0.0091 38 1 6.0360 0.9962 -0.0004 39 1 8.2480 -1.8337 -0.9720 40 1 7.8769 -0.0867 -1.3057 41 1 9.5862 -2.2035 1.2168 42 1 10.3773 -0.8115 0.4392 43 1 12.1733 -0.9641 4.0301 44 1 11.6564 -2.3558 3.0485 45 1 12.4469 -0.9633 2.2711 46 1 6.5870 -0.9309 2.1993 47 1 7.3392 -2.4285 1.4976 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_12297780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:21 Heat of formation + Delta-G solvation = -79.783158 kcal Electronic energy + Delta-G solvation = -29806.943599 eV Core-core repulsion = 25663.777995 eV Total energy + Delta-G solvation = -4143.165604 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13577 -41.05160 -40.11630 -39.19070 -38.43227 -36.97743 -34.63545 -32.25293 -31.88882 -30.37693 -29.57321 -28.99536 -28.14259 -26.62445 -26.14152 -24.98651 -23.72343 -22.70040 -21.69408 -20.28509 -19.95788 -18.89535 -18.11214 -17.93942 -17.37174 -17.23677 -17.00260 -16.61636 -16.44074 -16.31878 -16.01227 -15.82838 -15.80011 -15.60802 -15.31131 -15.25444 -14.94769 -14.70700 -14.25752 -14.19969 -14.02844 -13.82472 -13.64057 -13.42662 -13.31470 -13.18884 -12.75406 -12.67654 -12.54531 -12.52913 -12.28132 -12.05185 -11.96454 -11.65897 -11.43060 -11.14561 -10.92600 -10.83353 -10.39382 -10.06943 -9.92212 -9.20165 -8.65864 -5.07259 -0.27326 0.07017 0.78991 1.29521 1.63773 1.72622 1.74291 1.99361 2.09338 2.10563 2.17488 2.59917 3.42985 3.49960 3.53835 3.62515 3.64401 3.73049 3.79844 3.84518 3.92494 4.10839 4.16062 4.22394 4.25490 4.26497 4.28131 4.32136 4.33257 4.39477 4.47602 4.51116 4.60324 4.62684 4.65319 4.74035 4.80495 4.85396 4.88353 4.89644 4.97381 5.01329 5.10320 5.15219 5.25828 5.29390 5.66999 6.02042 6.27730 6.55974 6.84718 7.27026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.217 3.783 4 C -0.311 4.311 5 C 0.213 3.787 6 O -0.314 6.314 7 C 0.012 3.988 8 C -0.204 4.204 9 C -0.059 4.059 10 O -0.553 6.553 11 Si 0.770 3.230 12 C 0.010 3.990 13 C -0.226 4.226 14 C 0.566 3.434 15 O -0.563 6.563 16 N -0.701 5.701 17 C 0.115 3.885 18 H 0.087 0.913 19 C -0.117 4.117 20 C -0.091 4.091 21 H 0.101 0.899 22 C -0.060 4.060 23 S -0.328 6.328 24 C -0.112 4.112 25 C -0.146 4.146 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.163 0.837 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.393 0.607 35 H -0.293 1.293 36 H -0.278 1.278 37 H 0.167 0.833 38 H 0.411 0.589 39 H 0.110 0.890 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 0.084 -3.443 3.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.330 4.330 5 C 0.165 3.835 6 O -0.225 6.225 7 C -0.082 4.082 8 C -0.205 4.205 9 C -0.168 4.168 10 O -0.360 6.360 11 Si 0.675 3.325 12 C -0.008 4.008 13 C -0.230 4.230 14 C 0.355 3.645 15 O -0.443 6.443 16 N -0.354 5.354 17 C 0.009 3.991 18 H 0.105 0.895 19 C -0.156 4.156 20 C -0.110 4.110 21 H 0.119 0.881 22 C -0.208 4.208 23 S -0.102 6.102 24 C -0.280 4.280 25 C -0.185 4.185 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.132 0.868 29 H 0.180 0.820 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.243 0.757 35 H -0.221 1.221 36 H -0.204 1.204 37 H 0.184 0.816 38 H 0.249 0.751 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.159 0.643 -1.860 2.284 hybrid contribution -0.552 -0.326 -0.154 0.659 sum 0.607 0.317 -2.013 2.127 Atomic orbital electron populations 1.23472 0.76556 1.05771 1.02603 1.86368 1.23168 1.25848 1.86019 1.18987 0.91149 0.84676 0.88384 1.21413 1.02007 0.90758 1.18870 1.18948 0.90993 0.84905 0.88698 1.86145 1.21089 1.28779 1.86529 1.23461 0.76283 1.05826 1.02620 1.19604 0.90906 0.96773 1.13247 1.25020 1.11074 0.91618 0.89072 1.86510 1.82630 1.50182 1.16714 0.94371 0.73743 0.81495 0.82923 1.20845 0.99671 0.88720 0.91589 1.19149 0.90774 0.93856 1.19252 1.18012 0.82523 0.88288 0.75651 1.90818 1.72333 1.30276 1.50859 1.45440 1.04861 1.09945 1.75114 1.21836 0.91874 0.87817 0.97562 0.89494 1.23353 0.92217 1.04501 0.95574 1.22375 0.91143 1.00383 0.97136 0.88057 1.23434 1.00311 1.03123 0.93945 1.87253 1.26387 1.67604 1.28959 1.23389 0.94683 1.03412 1.06515 1.23513 0.96662 1.01152 0.97166 0.91210 0.90953 0.86846 0.82011 0.91309 0.86337 0.91157 0.88409 0.75715 1.22096 1.20397 0.81606 0.75063 0.87166 0.88316 0.89362 0.88405 0.87995 0.89833 0.89449 0.92593 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.61 8.56 -68.84 -0.59 -3.20 16 3 C 0.22 1.39 6.70 22.82 0.15 1.54 16 4 C -0.31 -0.70 8.01 22.43 0.18 -0.52 16 5 C 0.21 0.69 6.67 22.60 0.15 0.84 16 6 O -0.31 -1.02 9.80 -90.44 -0.89 -1.91 16 7 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 8 C -0.20 -0.27 5.27 -19.80 -0.10 -0.37 16 9 C -0.06 -0.03 2.37 71.24 0.17 0.13 16 10 O -0.55 -0.62 12.88 -148.98 -1.92 -2.54 16 11 Si 0.77 -2.39 29.91 68.60 2.05 -0.34 16 12 C 0.01 -0.01 8.14 22.50 0.18 0.17 16 13 C -0.23 -1.13 5.89 -20.00 -0.12 -1.24 16 14 C 0.57 4.31 7.76 86.63 0.67 4.98 16 15 O -0.56 -9.23 14.75 16.87 0.25 -8.98 16 16 N -0.70 0.11 5.21 -443.43 -2.31 -2.20 16 17 C 0.11 -0.08 4.32 45.51 0.20 0.12 16 18 H 0.09 0.34 7.46 -2.39 -0.02 0.32 16 19 C -0.12 0.85 7.39 31.12 0.23 1.08 16 20 C -0.09 0.43 3.53 -10.27 -0.04 0.39 16 21 H 0.10 -0.49 8.13 -2.39 -0.02 -0.50 16 22 C -0.06 0.25 5.78 71.98 0.42 0.66 16 23 S -0.33 -0.58 22.37 -56.49 -1.26 -1.84 16 24 C -0.11 0.32 10.76 113.37 1.22 1.54 16 25 C -0.15 0.08 7.43 31.12 0.23 0.31 16 26 H 0.07 -0.27 7.66 -2.39 -0.02 -0.28 16 27 H 0.07 -0.31 7.66 -2.38 -0.02 -0.32 16 28 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H 0.16 -0.43 4.50 -2.91 -0.01 -0.44 16 30 H 0.07 -0.43 7.65 -2.39 -0.02 -0.45 16 31 H 0.12 -0.82 8.14 -2.38 -0.02 -0.84 16 32 H 0.07 -0.44 7.65 -2.39 -0.02 -0.46 16 33 H 0.10 0.36 7.82 -2.38 -0.02 0.34 16 34 H 0.39 -3.07 8.70 -74.06 -0.64 -3.71 16 35 H -0.29 -1.29 7.11 99.48 0.71 -0.59 16 36 H -0.28 -0.42 7.11 99.48 0.71 0.29 16 37 H 0.17 -1.36 3.44 -2.91 -0.01 -1.37 16 38 H 0.41 -2.78 6.72 -92.71 -0.62 -3.40 16 39 H 0.11 -0.99 8.10 -2.39 -0.02 -1.01 16 40 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H 0.09 -0.43 7.85 -2.39 -0.02 -0.45 16 42 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.09 -0.09 7.90 -2.39 -0.02 -0.11 16 Total: 0.00 -26.08 393.67 0.88 -25.20 By element: Atomic # 1 Polarization: -15.78 SS G_CDS: -0.22 Total: -15.99 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 5.77 Total: 11.81 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -2.31 Total: -2.20 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -3.15 Total: -16.63 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.05 Total: -0.34 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -1.26 Total: -1.84 kcal Total: -26.08 0.88 -25.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12297780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.586 kcal (2) G-P(sol) polarization free energy of solvation -26.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds