Wall clock time and date at job start Tue Mar 9 2021 13:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81405 * 103.00038 * 2 1 4 4 C 1.53002 * 109.46794 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.85337 * 316.19285 * 4 3 2 6 6 C 1.53787 * 113.61615 * 87.50566 * 4 3 2 7 7 C 1.53780 * 87.08224 * 139.97648 * 6 4 3 8 8 H 1.08993 * 113.68786 * 220.00718 * 7 6 4 9 9 N 1.46501 * 113.61282 * 89.11647 * 7 6 4 10 10 C 1.34773 * 119.99919 * 107.50038 * 9 7 6 11 11 O 1.21285 * 120.00027 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99946 * 179.97438 * 10 9 7 13 13 C 1.50700 * 109.47156 * 180.02562 * 12 10 9 14 14 C 1.38237 * 119.99800 * 90.00176 * 13 12 10 15 15 C 1.38233 * 119.99771 * 179.97438 * 14 13 12 16 16 C 1.38234 * 120.00423 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00438 * 179.97438 * 16 15 14 18 18 O 1.42905 * 109.46996 * 64.99275 * 17 16 15 19 19 Si 1.86301 * 109.47403 * 184.99539 * 17 16 15 20 20 C 1.38238 * 119.99500 * 0.24645 * 16 15 14 21 21 C 1.38230 * 120.00297 * 359.47433 * 20 16 15 22 22 C 1.53780 * 113.61062 * 185.00085 * 4 3 2 23 23 H 1.09002 * 109.46681 * 299.99722 * 1 2 3 24 24 H 1.08993 * 109.46986 * 59.99838 * 1 2 3 25 25 H 1.08995 * 109.47068 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46979 * 60.00261 * 3 2 1 27 27 H 1.08996 * 109.47130 * 300.00102 * 3 2 1 28 28 H 1.09004 * 113.61222 * 25.42729 * 6 4 3 29 29 H 1.08999 * 113.60854 * 254.52873 * 6 4 3 30 30 H 0.96996 * 120.00021 * 287.50000 * 9 7 6 31 31 H 1.09006 * 109.46639 * 60.00636 * 12 10 9 32 32 H 1.08996 * 109.47351 * 300.00742 * 12 10 9 33 33 H 1.07992 * 119.99739 * 359.97438 * 14 13 12 34 34 H 1.08004 * 119.99864 * 179.97438 * 15 14 13 35 35 H 1.09001 * 109.46613 * 304.99687 * 17 16 15 36 36 H 0.96696 * 114.00036 * 60.00342 * 18 17 16 37 37 H 1.48497 * 109.99842 * 179.97438 * 19 17 16 38 38 H 1.48498 * 109.99736 * 301.31722 * 19 17 16 39 39 H 1.08000 * 119.99674 * 179.73054 * 20 16 15 40 40 H 1.07996 * 120.00213 * 180.27381 * 21 20 16 41 41 H 1.08997 * 113.61744 * 105.47249 * 22 4 3 42 42 H 1.09002 * 113.61696 * 334.56409 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2449 1.2672 0.6944 6 6 4.3608 1.9485 -1.4087 7 6 5.2868 3.0702 -0.9096 8 1 5.4515 3.8604 -1.6420 9 7 6.5311 2.5811 -0.3108 10 6 7.6977 2.7226 -0.9707 11 8 7.7174 3.2554 -2.0601 12 6 8.9778 2.2200 -0.3545 13 6 10.1279 2.4989 -1.2876 14 6 10.8215 3.6909 -1.1926 15 6 11.8767 3.9465 -2.0482 16 6 12.2381 3.0105 -2.9990 17 6 13.3881 3.2894 -3.9321 18 8 14.6013 3.3719 -3.1814 19 14 13.5227 1.9133 -5.1806 20 6 11.5409 1.8209 -3.0976 21 6 10.4893 1.5628 -2.2383 22 6 4.1963 3.4040 0.1221 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8032 2.2371 0.8900 27 1 1.8031 2.2371 -0.8899 28 1 3.6685 2.2680 -2.1877 29 1 4.8868 1.0275 -1.6600 30 1 6.5155 2.1554 0.5606 31 1 8.9011 1.1463 -0.1826 32 1 9.1486 2.7285 0.5943 33 1 10.5389 4.4223 -0.4501 34 1 12.4184 4.8780 -1.9742 35 1 13.2158 4.2335 -4.4489 36 1 14.8182 2.5651 -2.6945 37 1 14.6529 2.1769 -6.1071 38 1 13.7260 0.6162 -4.4869 39 1 11.8204 1.0914 -3.8434 40 1 9.9475 0.6315 -2.3125 41 1 4.5896 3.6582 1.1064 42 1 3.4591 4.1215 -0.2384 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:27 Heat of formation + Delta-G solvation = -21.396533 kcal Electronic energy + Delta-G solvation = -22172.779389 eV Core-core repulsion = 18825.047622 eV Total energy + Delta-G solvation = -3347.731767 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45230 -40.55509 -39.31884 -37.65635 -34.63421 -33.97560 -31.89593 -30.91999 -29.90907 -29.35280 -26.83246 -25.85812 -23.93742 -23.77209 -22.40693 -21.38690 -20.32815 -18.49295 -18.22248 -17.38953 -17.23720 -16.94639 -16.53719 -16.27964 -16.11367 -15.97617 -15.76444 -15.29601 -15.12313 -14.85765 -14.71772 -14.45531 -14.41699 -14.05853 -13.84565 -13.74073 -13.42605 -13.24870 -13.20305 -12.89146 -12.76984 -12.21022 -12.19596 -11.94009 -11.60184 -11.52094 -11.31405 -10.95215 -10.88288 -10.52160 -10.07331 -9.81232 -9.58820 -8.68003 -4.89511 0.28487 0.51877 0.65340 1.34272 1.58299 1.63726 1.64332 1.99969 2.07125 2.80946 3.33005 3.43132 3.43423 3.58581 3.61724 3.70218 3.80382 3.85747 3.95829 4.06740 4.13125 4.13799 4.18858 4.25036 4.28352 4.39434 4.41694 4.50861 4.60239 4.61273 4.63109 4.72066 4.73228 4.77101 4.94167 4.97060 5.03103 5.09147 5.11938 5.42647 5.54495 5.59432 5.62738 6.04778 6.44868 6.45301 7.23168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.075 4.075 4 C -0.095 4.095 5 H 0.098 0.902 6 C -0.142 4.142 7 C 0.120 3.880 8 H 0.105 0.895 9 N -0.716 5.716 10 C 0.517 3.483 11 O -0.524 6.524 12 C -0.104 4.104 13 C -0.063 4.063 14 C -0.104 4.104 15 C -0.090 4.090 16 C -0.117 4.117 17 C -0.075 4.075 18 O -0.530 6.530 19 Si 0.686 3.314 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.136 4.136 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.401 0.599 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.375 0.625 37 H -0.258 1.258 38 H -0.260 1.260 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.077 0.923 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.314 -0.836 3.317 5.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.224 4.224 4 C -0.115 4.115 5 H 0.117 0.883 6 C -0.181 4.181 7 C 0.014 3.986 8 H 0.123 0.877 9 N -0.368 5.368 10 C 0.303 3.697 11 O -0.399 6.399 12 C -0.144 4.144 13 C -0.063 4.063 14 C -0.122 4.122 15 C -0.109 4.109 16 C -0.117 4.117 17 C -0.185 4.185 18 O -0.336 6.336 19 Si 0.588 3.412 20 C -0.134 4.134 21 C -0.118 4.118 22 C -0.176 4.176 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.236 0.764 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.223 0.777 37 H -0.183 1.183 38 H -0.185 1.185 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.096 0.904 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.132 -1.365 1.924 3.921 hybrid contribution -0.492 0.605 1.557 1.741 sum -3.624 -0.760 3.481 5.082 Atomic orbital electron populations 1.23393 0.94012 1.06736 1.04954 1.87017 1.07561 1.11274 1.98050 1.23433 0.99374 0.94532 1.05018 1.22383 0.92557 0.97507 0.99014 0.88338 1.23497 0.98534 0.99809 0.96249 1.21794 0.82951 0.97412 0.96398 0.87659 1.45694 1.06346 1.62165 1.22625 1.20573 0.84668 0.78833 0.85586 1.90762 1.86633 1.42131 1.20326 1.20695 0.90618 1.03831 0.99206 1.19266 0.95536 0.94796 0.96719 1.21012 0.95606 0.96166 0.99408 1.20963 0.96349 0.99015 0.94524 1.20250 0.98069 0.95027 0.98355 1.25025 0.83109 1.11699 0.98689 1.86602 1.40183 1.41195 1.65644 0.94835 0.88655 0.76184 0.81550 1.20982 0.96578 0.96636 0.99173 1.20908 0.96808 0.99258 0.94801 1.23399 0.97905 0.96221 1.00059 0.90469 0.90428 0.87971 0.89870 0.89831 0.88879 0.90621 0.76420 0.87645 0.87694 0.85999 0.85663 0.86455 0.77738 1.18267 1.18542 0.85612 0.85804 0.90389 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.18 10.76 101.05 1.09 1.27 16 2 S -0.26 -0.13 22.37 -107.50 -2.40 -2.53 16 3 C -0.08 0.13 5.78 37.16 0.21 0.35 16 4 C -0.10 0.22 3.53 -89.80 -0.32 -0.10 16 5 H 0.10 -0.21 8.13 -51.93 -0.42 -0.63 16 6 C -0.14 0.17 7.43 -25.92 -0.19 -0.02 16 7 C 0.12 -0.14 4.32 -67.12 -0.29 -0.43 16 8 H 0.11 0.08 7.46 -51.93 -0.39 -0.31 16 9 N -0.72 1.23 5.26 -53.02 -0.28 0.96 16 10 C 0.52 0.35 7.82 -10.99 -0.09 0.27 16 11 O -0.52 -2.71 15.63 5.55 0.09 -2.62 16 12 C -0.10 0.18 5.83 -29.03 -0.17 0.01 16 13 C -0.06 -0.06 4.37 -104.62 -0.46 -0.51 16 14 C -0.10 -0.14 9.70 -39.58 -0.38 -0.53 16 15 C -0.09 -0.17 9.69 -39.58 -0.38 -0.55 16 16 C -0.12 -0.18 5.35 -104.63 -0.56 -0.74 16 17 C -0.08 -0.07 2.80 36.00 0.10 0.03 16 18 O -0.53 -1.11 12.83 -35.23 -0.45 -1.56 16 19 Si 0.69 0.06 29.88 -169.99 -5.08 -5.02 16 20 C -0.12 -0.12 8.67 -39.58 -0.34 -0.47 16 21 C -0.10 -0.10 9.70 -39.58 -0.38 -0.49 16 22 C -0.14 0.41 7.39 -25.92 -0.19 0.22 16 23 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 24 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 26 H 0.08 -0.19 8.14 -51.92 -0.42 -0.61 16 27 H 0.08 -0.17 7.84 -51.93 -0.41 -0.58 16 28 H 0.09 -0.12 7.90 -51.93 -0.41 -0.53 16 29 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.40 -1.72 8.70 -40.82 -0.36 -2.08 16 31 H 0.11 -0.39 8.09 -51.93 -0.42 -0.81 16 32 H 0.10 -0.39 8.08 -51.93 -0.42 -0.81 16 33 H 0.12 -0.02 8.06 -52.49 -0.42 -0.44 16 34 H 0.13 0.15 8.06 -52.48 -0.42 -0.27 16 35 H 0.12 0.05 7.96 -51.93 -0.41 -0.36 16 36 H 0.38 -0.31 8.70 45.56 0.40 0.09 16 37 H -0.26 -0.83 7.11 56.52 0.40 -0.43 16 38 H -0.26 -0.45 7.01 56.52 0.40 -0.05 16 39 H 0.13 -0.06 4.85 -52.49 -0.25 -0.32 16 40 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 41 H 0.08 -0.27 8.14 -51.93 -0.42 -0.69 16 42 H 0.10 -0.34 8.10 -51.93 -0.42 -0.76 16 LS Contribution 362.08 15.07 5.46 5.46 Total: 0.00 -7.76 362.08 -11.55 -19.30 By element: Atomic # 1 Polarization: -5.77 SS G_CDS: -6.52 Total: -12.29 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.36 Total: -1.69 kcal Atomic # 7 Polarization: 1.23 SS G_CDS: -0.28 Total: 0.96 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.37 Total: -4.18 kcal Atomic # 14 Polarization: 0.06 SS G_CDS: -5.08 Total: -5.02 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.40 Total: -2.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -7.76 -11.55 -19.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.092 kcal (2) G-P(sol) polarization free energy of solvation -7.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds