Wall clock time and date at job start Tue Mar 9 2021 13:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81406 * 102.99738 * 2 1 4 4 C 1.53003 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.85216 * 316.19671 * 4 3 2 6 6 C 1.53777 * 113.69093 * 87.46415 * 4 3 2 7 7 C 1.53774 * 87.08381 * 139.99070 * 6 4 3 8 8 H 1.08997 * 113.69521 * 220.00978 * 7 6 4 9 9 N 1.46505 * 113.61385 * 89.11575 * 7 6 4 10 10 C 1.34777 * 119.99724 * 107.50723 * 9 7 6 11 11 O 1.21693 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.46425 * 119.99668 * 179.97438 * 10 9 7 13 13 C 1.34808 * 119.99920 * 179.97438 * 12 10 9 14 14 C 1.47207 * 120.00030 * 179.72181 * 13 12 10 15 15 C 1.39838 * 120.16801 * 0.02562 * 14 13 12 16 16 C 1.37891 * 119.82419 * 179.78322 * 15 14 13 17 17 C 1.38401 * 120.17304 * 0.47020 * 16 15 14 18 18 C 1.50696 * 119.83283 * 179.75847 * 17 16 15 19 19 O 1.42897 * 109.47763 * 245.02548 * 18 17 16 20 20 Si 1.86301 * 109.46839 * 5.02561 * 18 17 16 21 21 C 1.38401 * 120.34512 * 359.78431 * 17 16 15 22 22 C 1.37895 * 120.17104 * 359.97438 * 21 17 16 23 23 C 1.53783 * 113.61410 * 185.00117 * 4 3 2 24 24 H 1.08998 * 109.47178 * 299.99498 * 1 2 3 25 25 H 1.08991 * 109.47187 * 60.00554 * 1 2 3 26 26 H 1.09000 * 109.46426 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47252 * 60.00367 * 3 2 1 28 28 H 1.08998 * 109.46964 * 299.99963 * 3 2 1 29 29 H 1.09001 * 113.61290 * 25.44330 * 6 4 3 30 30 H 1.09000 * 113.61684 * 254.54352 * 6 4 3 31 31 H 0.97000 * 119.99792 * 287.50291 * 9 7 6 32 32 H 1.08001 * 120.00362 * 0.02562 * 12 10 9 33 33 H 1.08002 * 120.00248 * 0.02562 * 13 12 10 34 34 H 1.07992 * 120.08796 * 0.02562 * 15 14 13 35 35 H 1.08006 * 119.91926 * 180.22743 * 16 15 14 36 36 H 1.09005 * 109.47250 * 125.02193 * 18 17 16 37 37 H 0.96696 * 114.00073 * 59.99295 * 19 18 17 38 38 H 1.48502 * 110.00141 * 58.67676 * 20 18 17 39 39 H 1.48507 * 110.00224 * 179.97438 * 20 18 17 40 40 H 1.07997 * 119.92055 * 179.97438 * 21 17 16 41 41 H 1.07999 * 120.08848 * 179.97438 * 22 21 17 42 42 H 1.08989 * 113.61450 * 105.38610 * 23 4 3 43 43 H 1.09002 * 113.69000 * 334.48924 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9401 0.0006 5 1 4.2443 1.2675 0.6962 6 6 4.3638 1.9477 -1.4059 7 6 5.2888 3.0696 -0.9055 8 1 5.4553 3.8594 -1.6380 9 7 6.5318 2.5808 -0.3036 10 6 7.6999 2.7220 -0.9610 11 8 7.7220 3.2550 -2.0548 12 6 8.9423 2.2339 -0.3592 13 6 10.1105 2.3746 -1.0169 14 6 11.3605 1.8894 -0.4092 15 6 11.3399 1.2816 0.8500 16 6 12.5143 0.8257 1.4107 17 6 13.7125 0.9771 0.7349 18 6 14.9922 0.4810 1.3572 19 8 15.8502 1.5903 1.6311 20 14 14.6047 -0.4115 2.9459 21 6 13.7418 1.5824 -0.5094 22 6 12.5752 2.0391 -1.0856 23 6 4.1961 3.4043 0.1235 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.8031 2.2372 0.8900 28 1 1.8030 2.2371 -0.8900 29 1 3.6734 2.2667 -2.1867 30 1 4.8903 1.0265 -1.6556 31 1 6.5141 2.1556 0.5681 32 1 8.9226 1.7604 0.6114 33 1 10.1302 2.8476 -1.9876 34 1 10.4062 1.1660 1.3803 35 1 12.4997 0.3527 2.3816 36 1 15.4900 -0.2021 0.6689 37 1 15.4709 2.2403 2.2383 38 1 13.6874 -1.5485 2.6791 39 1 15.8584 -0.9064 3.5694 40 1 14.6807 1.6974 -1.0306 41 1 12.5996 2.5116 -2.0564 42 1 4.5871 3.6590 1.1085 43 1 3.4606 4.1226 -0.2387 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:54 Heat of formation + Delta-G solvation = 0.797670 kcal Electronic energy + Delta-G solvation = -22836.917486 eV Core-core repulsion = 19361.921991 eV Total energy + Delta-G solvation = -3474.995495 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.123 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34608 -40.60340 -39.48631 -37.76338 -35.06973 -34.64839 -32.21388 -31.40425 -30.48535 -29.62675 -27.19532 -26.70644 -24.71345 -23.99777 -23.34304 -22.12930 -20.55506 -20.18721 -18.87611 -18.15627 -17.36512 -17.24021 -16.79435 -16.53672 -16.25755 -16.12618 -15.99072 -15.53761 -15.36773 -15.09972 -15.04608 -14.81796 -14.53128 -14.29978 -14.17814 -13.88957 -13.81781 -13.57072 -13.32781 -13.28366 -13.03457 -12.83471 -12.25736 -12.08813 -12.06236 -11.72344 -11.50539 -11.35570 -11.22564 -11.10156 -10.88410 -10.43682 -10.11650 -9.98706 -9.25223 -8.69524 -5.00316 -0.56080 0.39090 0.74562 0.87823 1.30800 1.64272 1.68228 1.97565 2.13016 2.21282 2.81064 3.44874 3.47696 3.56878 3.58267 3.68030 3.74582 3.81099 3.84535 3.94548 4.16102 4.20395 4.28299 4.30365 4.34025 4.35433 4.42391 4.43978 4.51917 4.54355 4.74993 4.77677 4.83230 4.85060 4.86926 4.96930 5.01975 5.06101 5.09008 5.16838 5.19965 5.37949 5.47610 5.59049 5.60609 5.89680 6.52327 6.75832 7.20029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.324 6.324 3 C -0.062 4.062 4 C -0.087 4.087 5 H 0.099 0.901 6 C -0.144 4.144 7 C 0.111 3.889 8 H 0.084 0.916 9 N -0.695 5.695 10 C 0.544 3.456 11 O -0.592 6.592 12 C -0.208 4.208 13 C -0.020 4.020 14 C -0.081 4.081 15 C -0.094 4.094 16 C -0.120 4.120 17 C -0.113 4.113 18 C -0.079 4.079 19 O -0.556 6.556 20 Si 0.781 3.219 21 C -0.108 4.108 22 C -0.103 4.103 23 C -0.118 4.118 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.417 0.583 32 H 0.165 0.835 33 H 0.121 0.879 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.105 0.895 37 H 0.396 0.604 38 H -0.284 1.284 39 H -0.303 1.303 40 H 0.128 0.872 41 H 0.135 0.865 42 H 0.092 0.908 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 1.557 6.436 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.098 6.098 3 C -0.210 4.210 4 C -0.106 4.106 5 H 0.118 0.882 6 C -0.183 4.183 7 C 0.005 3.995 8 H 0.103 0.897 9 N -0.346 5.346 10 C 0.334 3.666 11 O -0.474 6.474 12 C -0.228 4.228 13 C -0.040 4.040 14 C -0.081 4.081 15 C -0.112 4.112 16 C -0.137 4.137 17 C -0.113 4.113 18 C -0.189 4.189 19 O -0.364 6.364 20 Si 0.687 3.313 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.158 4.158 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.255 0.745 32 H 0.182 0.818 33 H 0.139 0.861 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.122 0.878 37 H 0.246 0.754 38 H -0.210 1.210 39 H -0.231 1.231 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.110 0.890 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.042 -0.015 5.718 6.476 hybrid contribution -0.613 0.599 -0.789 1.165 sum -3.655 0.584 4.928 6.163 Atomic orbital electron populations 1.23399 0.91795 1.07130 1.05724 1.87220 1.10220 1.14220 1.98187 1.23432 0.99426 0.92335 1.05811 1.22319 0.92376 0.98071 0.97861 0.88237 1.23490 0.98562 0.98879 0.97326 1.21846 0.83418 0.97063 0.97152 0.89738 1.45460 1.05627 1.60716 1.22760 1.18772 0.85185 0.78125 0.84483 1.90814 1.87808 1.46060 1.22766 1.23000 0.90921 1.05850 1.03058 1.22364 0.91128 0.92293 0.98247 1.19119 0.92622 1.00801 0.95608 1.21671 0.99554 0.95965 0.93993 1.21181 0.91752 1.00371 1.00394 1.20619 0.95622 0.99415 0.95676 1.25267 0.90377 0.94247 1.08993 1.86479 1.43748 1.35894 1.70305 0.93741 0.78149 0.80947 0.78496 1.21077 0.98471 0.97902 0.95177 1.21610 0.91743 0.98536 1.00239 1.23332 0.96732 0.95767 0.99974 0.89502 0.89793 0.87830 0.88647 0.89335 0.88802 0.92340 0.74499 0.81752 0.86066 0.82384 0.83047 0.87788 0.75424 1.21043 1.23127 0.85436 0.84667 0.88967 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.36 10.76 113.37 1.22 1.58 16 2 S -0.32 -0.47 22.37 -56.49 -1.26 -1.74 16 3 C -0.06 0.25 5.78 71.98 0.42 0.66 16 4 C -0.09 0.40 3.53 -10.27 -0.04 0.37 16 5 H 0.10 -0.44 8.13 -2.39 -0.02 -0.46 16 6 C -0.14 0.13 7.43 31.12 0.23 0.37 16 7 C 0.11 -0.11 4.32 45.52 0.20 0.09 16 8 H 0.08 0.33 7.46 -2.39 -0.02 0.31 16 9 N -0.70 1.22 5.26 -444.26 -2.34 -1.11 16 10 C 0.54 2.36 7.74 86.37 0.67 3.03 16 11 O -0.59 -8.28 15.83 -4.33 -0.07 -8.34 16 12 C -0.21 0.26 9.41 23.62 0.22 0.48 16 13 C -0.02 -0.02 9.46 23.84 0.23 0.20 16 14 C -0.08 0.02 5.87 -20.15 -0.12 -0.10 16 15 C -0.09 0.36 9.41 22.57 0.21 0.57 16 16 C -0.12 0.47 8.65 22.23 0.19 0.66 16 17 C -0.11 0.11 5.36 -19.79 -0.11 0.00 16 18 C -0.08 0.10 2.80 71.23 0.20 0.29 16 19 O -0.56 0.08 12.83 -148.98 -1.91 -1.83 16 20 Si 0.78 -2.68 29.78 68.60 2.04 -0.64 16 21 C -0.11 -0.10 9.66 22.23 0.21 0.12 16 22 C -0.10 -0.08 9.80 22.58 0.22 0.14 16 23 C -0.12 0.79 7.39 31.12 0.23 1.02 16 24 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.08 -0.37 8.14 -2.40 -0.02 -0.39 16 26 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 27 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.09 -0.42 7.85 -2.39 -0.02 -0.43 16 29 H 0.09 -0.11 7.90 -2.39 -0.02 -0.13 16 30 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.42 -3.39 8.68 -92.71 -0.80 -4.20 16 32 H 0.17 -1.47 6.07 -2.91 -0.02 -1.48 16 33 H 0.12 0.50 7.52 -2.91 -0.02 0.48 16 34 H 0.16 -1.55 6.17 -2.91 -0.02 -1.57 16 35 H 0.15 -1.34 4.88 -2.91 -0.01 -1.36 16 36 H 0.10 0.05 7.96 -2.38 -0.02 0.03 16 37 H 0.40 -3.33 8.70 -74.06 -0.64 -3.97 16 38 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 39 H -0.30 -1.43 7.11 99.48 0.71 -0.73 16 40 H 0.13 0.07 8.06 -2.91 -0.02 0.04 16 41 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 42 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.11 -0.89 8.10 -2.39 -0.02 -0.91 16 Total: 0.00 -21.12 372.05 0.27 -20.85 By element: Atomic # 1 Polarization: -16.29 SS G_CDS: -0.38 Total: -16.67 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 4.19 Total: 9.48 kcal Atomic # 7 Polarization: 1.22 SS G_CDS: -2.34 Total: -1.11 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -1.98 Total: -10.17 kcal Atomic # 14 Polarization: -2.68 SS G_CDS: 2.04 Total: -0.64 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -1.26 Total: -1.74 kcal Total: -21.12 0.27 -20.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.647 kcal (2) G-P(sol) polarization free energy of solvation -21.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds