Wall clock time and date at job start Tue Mar 9 2021 13:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81396 * 103.00138 * 2 1 4 4 C 1.53004 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.90900 * 316.25297 * 4 3 2 6 6 C 1.54049 * 113.61716 * 87.50713 * 4 3 2 7 7 C 1.53780 * 86.98461 * 139.97686 * 6 4 3 8 8 H 1.09008 * 113.61334 * 219.97399 * 7 6 4 9 9 N 1.46498 * 113.61534 * 89.16456 * 7 6 4 10 10 C 1.34779 * 120.00686 * 105.85845 * 9 7 6 11 11 O 1.21626 * 119.99284 * 0.02562 * 10 9 7 12 12 C 1.47290 * 120.00122 * 180.02562 * 10 9 7 13 13 C 1.40372 * 120.04196 * 180.02562 * 12 10 9 14 14 O 1.35679 * 120.13897 * 0.03573 * 13 12 10 15 15 C 1.38317 * 119.72402 * 180.02562 * 13 12 10 16 16 C 1.39574 * 119.81356 * 359.97438 * 15 13 12 17 17 C 1.47564 * 119.95358 * 180.02562 * 16 15 13 18 18 C 1.36105 * 125.93937 * 180.02562 * 17 16 15 19 19 C 1.40800 * 106.73149 * 180.02562 * 18 17 16 20 20 C 1.34828 * 107.04950 * 0.02562 * 19 18 17 21 21 C 1.50704 * 125.65392 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.47055 * 64.94671 * 21 20 19 23 23 Si 1.86298 * 109.47325 * 184.94819 * 21 20 19 24 24 O 1.34228 * 108.69468 * 359.97438 * 20 19 18 25 25 C 1.39967 * 120.08547 * 0.28144 * 16 15 13 26 26 C 1.36387 * 120.27960 * 359.43640 * 25 16 15 27 27 C 1.53781 * 87.17469 * 334.56982 * 7 6 4 28 28 H 1.09000 * 109.47606 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47144 * 299.99977 * 1 2 3 30 30 H 1.08996 * 109.47124 * 59.99721 * 1 2 3 31 31 H 1.09002 * 109.46918 * 60.00135 * 3 2 1 32 32 H 1.09002 * 109.47240 * 299.99891 * 3 2 1 33 33 H 1.08999 * 113.61350 * 25.47550 * 6 4 3 34 34 H 1.08999 * 113.69623 * 254.49181 * 6 4 3 35 35 H 0.96999 * 119.99857 * 285.86638 * 9 7 6 36 36 H 0.96698 * 114.00227 * 269.97874 * 14 13 12 37 37 H 1.08002 * 120.09528 * 180.02562 * 15 13 12 38 38 H 1.08000 * 126.63644 * 359.75947 * 18 17 16 39 39 H 1.08003 * 126.47630 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.47084 * 304.94960 * 21 20 19 41 41 H 0.96703 * 113.99513 * 60.00256 * 22 21 20 42 42 H 1.48497 * 110.00134 * 179.97438 * 23 21 20 43 43 H 1.48496 * 110.00300 * 301.32196 * 23 21 20 44 44 H 1.07997 * 119.85853 * 179.72649 * 25 16 15 45 45 H 1.07997 * 119.90994 * 180.27269 * 26 25 16 46 46 H 1.08998 * 113.61070 * 140.02137 * 27 7 6 47 47 H 1.09003 * 113.61040 * 270.92518 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2453 1.2671 0.6952 6 6 4.3631 1.9483 -1.4092 7 6 5.2874 3.0700 -0.9071 8 1 5.4529 3.8601 -1.6397 9 7 6.5313 2.5811 -0.3073 10 6 7.6940 2.6946 -0.9795 11 8 7.7105 3.2036 -2.0840 12 6 8.9444 2.2025 -0.3765 13 6 10.1559 2.3208 -1.0756 14 8 10.1788 2.8890 -2.3075 15 6 11.3262 1.8559 -0.5034 16 6 11.2949 1.2732 0.7645 17 6 12.5417 0.7768 1.3782 18 6 12.6515 0.1902 2.6014 19 6 14.0125 -0.1230 2.7800 20 6 14.6607 0.2834 1.6698 21 6 16.1405 0.1495 1.4180 22 8 16.4870 -1.2346 1.3394 23 14 16.5761 0.9908 -0.1862 24 8 13.7694 0.8260 0.8256 25 6 10.0817 1.1544 1.4523 26 6 8.9264 1.6167 0.8940 27 6 4.1961 3.4041 0.1235 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8031 2.2370 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 3.6717 2.2684 -2.1888 34 1 4.8902 1.0281 -1.6612 35 1 6.5182 2.1754 0.5737 36 1 10.0509 2.2619 -3.0324 37 1 12.2617 1.9443 -1.0358 38 1 11.8504 0.0052 3.3017 39 1 14.4541 -0.5982 3.6436 40 1 16.6917 0.6163 2.2344 41 1 16.0328 -1.7142 0.6332 42 1 18.0329 0.8664 -0.4457 43 1 15.8072 0.3847 -1.3027 44 1 10.0611 0.6989 2.4314 45 1 7.9944 1.5259 1.4319 46 1 4.5886 3.6584 1.1081 47 1 3.4592 4.1214 -0.2378 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:15 Heat of formation + Delta-G solvation = -33.169991 kcal Electronic energy + Delta-G solvation = -30549.060632 eV Core-core repulsion = 26178.775524 eV Total energy + Delta-G solvation = -4370.285108 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.122 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.75985 -41.71423 -40.58244 -38.94943 -38.20032 -37.83347 -34.81407 -34.21579 -33.31615 -31.37432 -30.88742 -30.27052 -29.69619 -27.10794 -26.83601 -24.83757 -24.14170 -23.72574 -22.49993 -22.09279 -21.39814 -20.36537 -19.69605 -18.87307 -18.58718 -17.72688 -17.50431 -17.40989 -17.18995 -16.63751 -16.49648 -16.34218 -16.06678 -15.89873 -15.81851 -15.51955 -15.17070 -15.06078 -14.86728 -14.48932 -14.37882 -14.21307 -14.04770 -14.00261 -13.79594 -13.74244 -13.61298 -13.52165 -13.41194 -12.96612 -12.88935 -12.76045 -12.19960 -12.07196 -11.84856 -11.60997 -11.31200 -11.15353 -10.95160 -10.85969 -10.79895 -10.64155 -10.08800 -9.97865 -9.04058 -8.67907 -5.00861 -0.80557 0.09193 0.63541 0.65492 1.08686 1.41044 1.43559 1.58422 1.68232 1.89623 1.96242 2.00489 2.61634 2.99541 3.12265 3.30888 3.32237 3.43230 3.50661 3.59349 3.62878 3.74249 3.82459 3.88616 3.92360 4.12770 4.13473 4.14052 4.18766 4.28037 4.28946 4.35650 4.41619 4.54472 4.60227 4.63108 4.64772 4.71432 4.72433 4.76862 4.82960 4.93098 4.96988 4.98285 5.05505 5.08156 5.15783 5.36026 5.43681 5.53536 5.92800 6.19883 6.42550 6.67382 7.20546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.098 0.902 6 C -0.142 4.142 7 C 0.121 3.879 8 H 0.107 0.893 9 N -0.711 5.711 10 C 0.562 3.438 11 O -0.515 6.515 12 C -0.165 4.165 13 C 0.179 3.821 14 O -0.474 6.474 15 C -0.141 4.141 16 C 0.031 3.969 17 C 0.023 3.977 18 C -0.177 4.177 19 C -0.173 4.173 20 C -0.044 4.044 21 C -0.034 4.034 22 O -0.520 6.520 23 Si 0.698 3.302 24 O -0.162 6.162 25 C -0.116 4.116 26 C -0.064 4.064 27 C -0.135 4.135 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.399 0.601 36 H 0.399 0.601 37 H 0.144 0.856 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.138 0.862 41 H 0.381 0.619 42 H -0.247 1.247 43 H -0.255 1.255 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.078 0.922 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 0.034 3.649 4.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.223 4.223 4 C -0.115 4.115 5 H 0.116 0.884 6 C -0.181 4.181 7 C 0.016 3.984 8 H 0.125 0.875 9 N -0.364 5.364 10 C 0.349 3.651 11 O -0.391 6.391 12 C -0.169 4.169 13 C 0.133 3.867 14 O -0.285 6.285 15 C -0.159 4.159 16 C 0.030 3.970 17 C -0.026 4.026 18 C -0.196 4.196 19 C -0.192 4.192 20 C -0.094 4.094 21 C -0.144 4.144 22 O -0.327 6.327 23 Si 0.597 3.403 24 O -0.059 6.059 25 C -0.134 4.134 26 C -0.083 4.083 27 C -0.175 4.175 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.258 0.742 37 H 0.162 0.838 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.156 0.844 41 H 0.229 0.771 42 H -0.172 1.172 43 H -0.179 1.179 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.097 0.903 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.429 0.226 2.529 2.914 hybrid contribution -1.473 -0.922 0.466 1.799 sum -2.902 -0.696 2.995 4.228 Atomic orbital electron populations 1.23393 0.94017 1.06731 1.04956 1.87019 1.07550 1.11273 1.98051 1.23429 0.99319 0.94538 1.05052 1.22438 0.92588 0.97489 0.99006 0.88361 1.23550 0.98490 0.99784 0.96259 1.21806 0.82703 0.97462 0.96467 0.87526 1.45578 1.06525 1.62967 1.21322 1.17961 0.82965 0.78864 0.85276 1.90850 1.86327 1.42670 1.19225 1.20467 0.93662 1.05628 0.97128 1.18280 0.90205 0.90904 0.87352 1.84774 1.94355 1.36509 1.12890 1.21594 0.99096 0.99486 0.95737 1.17758 0.89062 0.96941 0.93236 1.20320 0.83307 1.05149 0.93867 1.21915 0.97789 1.03156 0.96754 1.21585 0.93315 1.04621 0.99680 1.22939 0.92822 1.02700 0.90927 1.24357 0.87305 0.88082 1.14663 1.86669 1.68908 1.19535 1.57598 0.94406 0.80899 0.90485 0.74503 1.83946 1.15710 1.63562 1.42659 1.20703 0.90504 1.01433 1.00753 1.20810 0.98641 0.95429 0.93383 1.23396 0.97825 0.96244 1.00056 0.87980 0.90459 0.90436 0.89840 0.89794 0.88774 0.90593 0.76509 0.74235 0.83828 0.82604 0.82666 0.84408 0.77108 1.17157 1.17925 0.84329 0.84640 0.90326 0.88234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.18 10.76 101.05 1.09 1.27 16 2 S -0.26 -0.13 22.37 -107.50 -2.40 -2.54 16 3 C -0.08 0.13 5.78 37.16 0.21 0.34 16 4 C -0.10 0.21 3.55 -89.66 -0.32 -0.11 16 5 H 0.10 -0.20 8.13 -51.93 -0.42 -0.62 16 6 C -0.14 0.15 7.45 -25.78 -0.19 -0.04 16 7 C 0.12 -0.10 4.30 -67.12 -0.29 -0.39 16 8 H 0.11 0.10 7.50 -51.92 -0.39 -0.28 16 9 N -0.71 0.53 5.21 -54.13 -0.28 0.25 16 10 C 0.56 1.26 7.75 -12.58 -0.10 1.17 16 11 O -0.52 -3.03 14.76 -16.70 -0.25 -3.28 16 12 C -0.17 -0.16 5.89 -104.79 -0.62 -0.78 16 13 C 0.18 0.32 6.71 -38.75 -0.26 0.06 16 14 O -0.47 -1.20 11.56 -40.70 -0.47 -1.67 16 15 C -0.14 -0.13 9.65 -39.05 -0.38 -0.51 16 16 C 0.03 0.01 5.87 -104.95 -0.62 -0.61 16 17 C 0.02 0.02 7.02 -36.55 -0.26 -0.24 16 18 C -0.18 0.01 10.26 -39.38 -0.40 -0.40 16 19 C -0.17 -0.06 10.78 -39.82 -0.43 -0.49 16 20 C -0.04 -0.02 6.21 -35.52 -0.22 -0.24 16 21 C -0.03 0.02 2.98 36.01 0.11 0.13 16 22 O -0.52 -0.20 12.88 -35.23 -0.45 -0.66 16 23 Si 0.70 -0.58 32.11 -169.99 -5.46 -6.04 16 24 O -0.16 -0.22 8.79 4.75 0.04 -0.18 16 25 C -0.12 0.17 9.48 -39.60 -0.38 -0.20 16 26 C -0.06 0.11 9.47 -39.62 -0.38 -0.27 16 27 C -0.14 0.39 7.38 -25.92 -0.19 0.19 16 28 H 0.10 -0.18 8.14 -51.92 -0.42 -0.61 16 29 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 30 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 31 H 0.08 -0.19 8.14 -51.92 -0.42 -0.61 16 32 H 0.08 -0.17 7.85 -51.92 -0.41 -0.58 16 33 H 0.09 -0.12 7.90 -51.93 -0.41 -0.53 16 34 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 35 H 0.40 -1.31 6.71 -40.82 -0.27 -1.59 16 36 H 0.40 -0.46 9.06 45.56 0.41 -0.05 16 37 H 0.14 0.05 7.90 -52.49 -0.41 -0.37 16 38 H 0.16 -0.37 7.24 -52.49 -0.38 -0.75 16 39 H 0.16 -0.13 8.06 -52.48 -0.42 -0.55 16 40 H 0.14 -0.31 7.96 -51.93 -0.41 -0.72 16 41 H 0.38 -0.87 8.70 45.56 0.40 -0.47 16 42 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 43 H -0.26 -0.45 7.11 56.52 0.40 -0.05 16 44 H 0.14 -0.52 6.95 -52.49 -0.37 -0.89 16 45 H 0.14 -0.63 6.38 -52.49 -0.33 -0.97 16 46 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 47 H 0.10 -0.34 8.10 -51.93 -0.42 -0.76 16 LS Contribution 410.46 15.07 6.19 6.19 Total: 0.00 -9.41 410.46 -12.28 -21.69 By element: Atomic # 1 Polarization: -7.08 SS G_CDS: -5.58 Total: -12.66 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.61 Total: -1.10 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -0.28 Total: 0.25 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -1.13 Total: -5.78 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: -5.46 Total: -6.04 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.40 Total: -2.54 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -9.41 -12.28 -21.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.479 kcal (2) G-P(sol) polarization free energy of solvation -9.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds