Wall clock time and date at job start Tue Mar 9 2021 13:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.81396 * 103.00138 * 2 1 4 4 C 1.53004 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.90900 * 316.25297 * 4 3 2 6 6 C 1.54049 * 113.61716 * 87.50713 * 4 3 2 7 7 C 1.53780 * 86.98461 * 139.97686 * 6 4 3 8 8 H 1.09008 * 113.61334 * 219.97399 * 7 6 4 9 9 N 1.46498 * 113.61534 * 89.16456 * 7 6 4 10 10 C 1.34779 * 120.00686 * 105.85845 * 9 7 6 11 11 O 1.21626 * 119.99284 * 0.02562 * 10 9 7 12 12 C 1.47290 * 120.00122 * 180.02562 * 10 9 7 13 13 C 1.40372 * 120.04196 * 180.02562 * 12 10 9 14 14 O 1.35679 * 120.13897 * 0.03573 * 13 12 10 15 15 C 1.38317 * 119.72402 * 180.02562 * 13 12 10 16 16 C 1.39574 * 119.81356 * 359.97438 * 15 13 12 17 17 C 1.47564 * 119.95358 * 180.02562 * 16 15 13 18 18 C 1.36105 * 125.93937 * 180.02562 * 17 16 15 19 19 C 1.40800 * 106.73149 * 180.02562 * 18 17 16 20 20 C 1.34828 * 107.04950 * 0.02562 * 19 18 17 21 21 C 1.50704 * 125.65392 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.47055 * 64.94671 * 21 20 19 23 23 Si 1.86298 * 109.47325 * 184.94819 * 21 20 19 24 24 O 1.34228 * 108.69468 * 359.97438 * 20 19 18 25 25 C 1.39967 * 120.08547 * 0.28144 * 16 15 13 26 26 C 1.36387 * 120.27960 * 359.43640 * 25 16 15 27 27 C 1.53781 * 87.17469 * 334.56982 * 7 6 4 28 28 H 1.09000 * 109.47606 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47144 * 299.99977 * 1 2 3 30 30 H 1.08996 * 109.47124 * 59.99721 * 1 2 3 31 31 H 1.09002 * 109.46918 * 60.00135 * 3 2 1 32 32 H 1.09002 * 109.47240 * 299.99891 * 3 2 1 33 33 H 1.08999 * 113.61350 * 25.47550 * 6 4 3 34 34 H 1.08999 * 113.69623 * 254.49181 * 6 4 3 35 35 H 0.96999 * 119.99857 * 285.86638 * 9 7 6 36 36 H 0.96698 * 114.00227 * 269.97874 * 14 13 12 37 37 H 1.08002 * 120.09528 * 180.02562 * 15 13 12 38 38 H 1.08000 * 126.63644 * 359.75947 * 18 17 16 39 39 H 1.08003 * 126.47630 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.47084 * 304.94960 * 21 20 19 41 41 H 0.96703 * 113.99513 * 60.00256 * 22 21 20 42 42 H 1.48497 * 110.00134 * 179.97438 * 23 21 20 43 43 H 1.48496 * 110.00300 * 301.32196 * 23 21 20 44 44 H 1.07997 * 119.85853 * 179.72649 * 25 16 15 45 45 H 1.07997 * 119.90994 * 180.27269 * 26 25 16 46 46 H 1.08998 * 113.61070 * 140.02137 * 27 7 6 47 47 H 1.09003 * 113.61040 * 270.92518 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.2453 1.2671 0.6952 6 6 4.3631 1.9483 -1.4092 7 6 5.2874 3.0700 -0.9071 8 1 5.4529 3.8601 -1.6397 9 7 6.5313 2.5811 -0.3073 10 6 7.6940 2.6946 -0.9795 11 8 7.7105 3.2036 -2.0840 12 6 8.9444 2.2025 -0.3765 13 6 10.1559 2.3208 -1.0756 14 8 10.1788 2.8890 -2.3075 15 6 11.3262 1.8559 -0.5034 16 6 11.2949 1.2732 0.7645 17 6 12.5417 0.7768 1.3782 18 6 12.6515 0.1902 2.6014 19 6 14.0125 -0.1230 2.7800 20 6 14.6607 0.2834 1.6698 21 6 16.1405 0.1495 1.4180 22 8 16.4870 -1.2346 1.3394 23 14 16.5761 0.9908 -0.1862 24 8 13.7694 0.8260 0.8256 25 6 10.0817 1.1544 1.4523 26 6 8.9264 1.6167 0.8940 27 6 4.1961 3.4041 0.1235 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8031 2.2370 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 3.6717 2.2684 -2.1888 34 1 4.8902 1.0281 -1.6612 35 1 6.5182 2.1754 0.5737 36 1 10.0509 2.2619 -3.0324 37 1 12.2617 1.9443 -1.0358 38 1 11.8504 0.0052 3.3017 39 1 14.4541 -0.5982 3.6436 40 1 16.6917 0.6163 2.2344 41 1 16.0328 -1.7142 0.6332 42 1 18.0329 0.8664 -0.4457 43 1 15.8072 0.3847 -1.3027 44 1 10.0611 0.6989 2.4314 45 1 7.9944 1.5259 1.4319 46 1 4.5886 3.6584 1.1081 47 1 3.4592 4.1214 -0.2378 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:13 Heat of formation + Delta-G solvation = -31.246534 kcal Electronic energy + Delta-G solvation = -30548.977224 eV Core-core repulsion = 26178.775524 eV Total energy + Delta-G solvation = -4370.201701 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.122 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.74851 -41.74740 -40.53471 -39.02595 -38.20128 -37.87309 -34.88922 -34.20268 -33.28112 -31.35810 -30.82864 -30.20166 -29.57777 -27.09207 -26.70273 -24.82235 -24.10049 -23.65915 -22.48822 -22.11013 -21.39050 -20.32030 -19.69241 -18.88239 -18.60334 -17.73215 -17.50438 -17.38119 -17.19922 -16.66219 -16.46147 -16.31891 -16.12561 -15.86823 -15.77471 -15.46463 -15.22361 -14.97379 -14.76284 -14.44772 -14.35858 -14.21117 -13.98285 -13.88762 -13.80007 -13.65989 -13.58666 -13.47243 -13.30800 -12.96298 -12.81073 -12.71924 -12.19636 -12.08789 -11.90266 -11.50514 -11.21906 -11.13934 -10.95714 -10.87536 -10.85193 -10.63412 -10.11050 -9.96293 -9.02370 -8.68310 -4.98912 -0.80549 0.13503 0.63471 0.75491 1.12155 1.42337 1.44512 1.68780 1.69024 1.87364 1.90722 2.00553 2.62589 3.00749 3.20862 3.35264 3.43775 3.56843 3.59372 3.64509 3.75169 3.84341 3.86368 3.98431 4.00093 4.21145 4.28788 4.30914 4.34467 4.36007 4.42070 4.44856 4.53826 4.63243 4.69325 4.74143 4.78053 4.79932 4.84479 4.87597 4.90333 5.02375 5.05058 5.07519 5.10203 5.18076 5.21125 5.42780 5.51939 5.58397 5.95564 6.31049 6.45125 6.67938 7.14980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.322 6.322 3 C -0.063 4.063 4 C -0.087 4.087 5 H 0.101 0.899 6 C -0.142 4.142 7 C 0.113 3.887 8 H 0.085 0.915 9 N -0.696 5.696 10 C 0.558 3.442 11 O -0.562 6.562 12 C -0.179 4.179 13 C 0.161 3.839 14 O -0.495 6.495 15 C -0.153 4.153 16 C 0.026 3.974 17 C 0.005 3.995 18 C -0.172 4.172 19 C -0.181 4.181 20 C -0.051 4.051 21 C -0.032 4.032 22 O -0.534 6.534 23 Si 0.761 3.239 24 O -0.176 6.176 25 C -0.109 4.109 26 C -0.051 4.051 27 C -0.119 4.119 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.414 0.586 36 H 0.408 0.592 37 H 0.138 0.862 38 H 0.182 0.818 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.390 0.610 42 H -0.280 1.280 43 H -0.295 1.295 44 H 0.170 0.830 45 H 0.171 0.829 46 H 0.092 0.908 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 -0.130 6.333 7.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.097 6.097 3 C -0.210 4.210 4 C -0.107 4.107 5 H 0.119 0.881 6 C -0.181 4.181 7 C 0.007 3.993 8 H 0.103 0.897 9 N -0.349 5.349 10 C 0.347 3.653 11 O -0.442 6.442 12 C -0.183 4.183 13 C 0.114 3.886 14 O -0.308 6.308 15 C -0.171 4.171 16 C 0.025 3.975 17 C -0.044 4.044 18 C -0.190 4.190 19 C -0.200 4.200 20 C -0.101 4.101 21 C -0.142 4.142 22 O -0.342 6.342 23 Si 0.665 3.335 24 O -0.074 6.074 25 C -0.127 4.127 26 C -0.070 4.070 27 C -0.158 4.158 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.252 0.748 36 H 0.268 0.732 37 H 0.156 0.844 38 H 0.199 0.801 39 H 0.185 0.815 40 H 0.175 0.825 41 H 0.239 0.761 42 H -0.206 1.206 43 H -0.222 1.222 44 H 0.187 0.813 45 H 0.188 0.812 46 H 0.111 0.889 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.655 0.051 5.255 5.888 hybrid contribution -1.094 -0.922 -0.413 1.489 sum -3.749 -0.872 4.842 6.186 Atomic orbital electron populations 1.23399 0.91890 1.07109 1.05701 1.87199 1.10116 1.14163 1.98184 1.23433 0.99421 0.92373 1.05816 1.22380 0.92384 0.98003 0.97885 0.88117 1.23532 0.98476 0.98826 0.97281 1.21855 0.83079 0.97129 0.97213 0.89712 1.45461 1.05788 1.62023 1.21581 1.18234 0.83977 0.78297 0.84836 1.90821 1.87034 1.45036 1.21282 1.20513 0.92707 1.06735 0.98351 1.18489 0.91017 0.91801 0.87255 1.84727 1.94518 1.37700 1.13819 1.21573 0.98677 1.00394 0.96464 1.17954 0.89828 0.96684 0.93001 1.20566 0.83254 1.06079 0.94545 1.22250 0.98319 1.01950 0.96520 1.21841 0.93676 1.04591 0.99912 1.23163 0.93121 1.02770 0.91073 1.24454 0.87060 0.87666 1.15026 1.86641 1.69315 1.20079 1.58210 0.93617 0.77334 0.89658 0.72893 1.83933 1.16238 1.63980 1.43277 1.21051 0.89483 1.00551 1.01623 1.21154 1.00130 0.93582 0.92102 1.23340 0.96692 0.95875 0.99939 0.87850 0.89525 0.89831 0.88658 0.89345 0.88741 0.92229 0.74782 0.73220 0.84378 0.80056 0.81518 0.82534 0.76052 1.20648 1.22213 0.81277 0.81211 0.88920 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.40 10.76 113.37 1.22 1.62 16 2 S -0.32 -0.27 22.37 -56.49 -1.26 -1.53 16 3 C -0.06 0.28 5.78 71.98 0.42 0.70 16 4 C -0.09 0.47 3.55 -10.17 -0.04 0.43 16 5 H 0.10 -0.55 8.13 -2.39 -0.02 -0.56 16 6 C -0.14 0.24 7.45 31.21 0.23 0.47 16 7 C 0.11 -0.15 4.30 45.52 0.20 0.05 16 8 H 0.08 0.30 7.50 -2.38 -0.02 0.28 16 9 N -0.70 1.10 5.21 -443.42 -2.31 -1.22 16 10 C 0.56 3.16 7.75 86.62 0.67 3.83 16 11 O -0.56 -8.04 14.76 16.88 0.25 -7.79 16 12 C -0.18 -0.46 5.89 -19.97 -0.12 -0.58 16 13 C 0.16 0.88 6.71 22.81 0.15 1.03 16 14 O -0.49 -3.97 11.56 -68.98 -0.80 -4.77 16 15 C -0.15 -0.53 9.65 22.61 0.22 -0.31 16 16 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 17 C 0.00 0.01 7.02 24.24 0.17 0.18 16 18 C -0.17 0.28 10.26 22.40 0.23 0.51 16 19 C -0.18 0.07 10.78 22.11 0.24 0.31 16 20 C -0.05 -0.04 6.21 24.90 0.15 0.11 16 21 C -0.03 0.05 2.98 71.24 0.21 0.26 16 22 O -0.53 -0.38 12.88 -148.98 -1.92 -2.30 16 23 Si 0.76 -0.40 32.11 68.60 2.20 1.81 16 24 O -0.18 -0.58 8.79 -5.92 -0.05 -0.63 16 25 C -0.11 0.52 9.48 22.26 0.21 0.73 16 26 C -0.05 0.25 9.47 22.24 0.21 0.46 16 27 C -0.12 0.84 7.38 31.12 0.23 1.07 16 28 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.09 -0.46 7.85 -2.39 -0.02 -0.48 16 33 H 0.09 -0.17 7.90 -2.39 -0.02 -0.19 16 34 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.41 -3.34 6.71 -92.71 -0.62 -3.97 16 36 H 0.41 0.48 9.06 -74.06 -0.67 -0.19 16 37 H 0.14 0.47 7.90 -2.91 -0.02 0.45 16 38 H 0.18 -1.41 7.24 -2.91 -0.02 -1.43 16 39 H 0.17 -0.54 8.06 -2.91 -0.02 -0.56 16 40 H 0.16 -0.86 7.96 -2.39 -0.02 -0.88 16 41 H 0.39 -1.60 8.70 -74.06 -0.64 -2.25 16 42 H -0.28 -1.34 7.11 99.48 0.71 -0.63 16 43 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 44 H 0.17 -1.88 6.95 -2.91 -0.02 -1.90 16 45 H 0.17 -2.11 6.38 -2.91 -0.02 -2.13 16 46 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 47 H 0.11 -0.94 8.10 -2.39 -0.02 -0.96 16 Total: 0.00 -24.64 410.46 -0.26 -24.90 By element: Atomic # 1 Polarization: -18.37 SS G_CDS: -0.86 Total: -19.22 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.49 Total: 10.77 kcal Atomic # 7 Polarization: 1.10 SS G_CDS: -2.31 Total: -1.22 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -2.52 Total: -15.50 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.20 Total: 1.81 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -1.26 Total: -1.53 kcal Total: -24.64 -0.26 -24.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.351 kcal (2) G-P(sol) polarization free energy of solvation -24.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds