Wall clock time and date at job start Tue Mar 9 2021 13:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81409 * 102.99875 * 2 1 4 4 C 1.53000 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.85038 * 43.80803 * 4 3 2 6 6 C 1.53787 * 113.60890 * 174.99992 * 4 3 2 7 7 C 1.53784 * 87.07923 * 139.98364 * 6 4 3 8 8 H 1.09004 * 113.61162 * 220.01809 * 7 6 4 9 9 N 1.46499 * 113.61434 * 89.11404 * 7 6 4 10 10 C 1.34778 * 119.99940 * 155.00095 * 9 7 6 11 11 O 1.21624 * 120.00077 * 359.97438 * 10 9 7 12 12 C 1.47261 * 119.99999 * 179.97438 * 10 9 7 13 13 C 1.36768 * 126.94354 * 359.68511 * 12 10 9 14 14 N 1.34658 * 108.39618 * 179.86618 * 13 12 10 15 15 C 1.46502 * 124.84953 * 180.13300 * 14 13 12 16 16 C 1.36448 * 110.29896 * 0.41215 * 14 13 12 17 17 C 1.50697 * 125.57038 * 179.76483 * 16 14 13 18 18 O 1.42903 * 109.47177 * 30.00382 * 17 16 14 19 19 Si 1.86298 * 109.47054 * 149.99870 * 17 16 14 20 20 C 1.34484 * 108.85482 * 359.74540 * 16 14 13 21 21 C 1.53779 * 87.08045 * 334.56667 * 7 6 4 22 22 H 1.08997 * 109.47050 * 59.99849 * 1 2 3 23 23 H 1.09000 * 109.47057 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46886 * 300.00105 * 1 2 3 25 25 H 1.09003 * 109.46795 * 59.99862 * 3 2 1 26 26 H 1.08993 * 109.47307 * 299.99955 * 3 2 1 27 27 H 1.09004 * 113.61202 * 254.53117 * 6 4 3 28 28 H 1.08994 * 113.61447 * 25.43549 * 6 4 3 29 29 H 0.97000 * 120.00274 * 334.99936 * 9 7 6 30 30 H 1.07997 * 125.79978 * 359.97438 * 13 12 10 31 31 H 1.08999 * 109.47637 * 270.31704 * 15 14 13 32 32 H 1.09003 * 109.46928 * 30.31604 * 15 14 13 33 33 H 1.09000 * 109.46941 * 150.31499 * 15 14 13 34 34 H 1.08996 * 109.47667 * 269.99979 * 17 16 14 35 35 H 0.96698 * 114.00233 * 59.99247 * 18 17 16 36 36 H 1.48504 * 109.99878 * 58.68198 * 19 17 16 37 37 H 1.48501 * 110.00154 * 180.02562 * 19 17 16 38 38 H 1.07998 * 126.83216 * 180.02562 * 20 16 14 39 39 H 1.09006 * 113.61307 * 270.88660 * 21 7 6 40 40 H 1.08999 * 113.69146 * 139.99146 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2449 1.2674 -0.6944 6 6 4.1962 3.4042 -0.1221 7 6 5.2867 3.0704 0.9095 8 1 5.4505 3.8601 1.6428 9 7 6.5311 2.5813 0.3107 10 6 7.6977 2.7229 0.9706 11 8 7.7175 3.2571 2.0630 12 6 8.9484 2.2307 0.3688 13 6 9.0892 1.6072 -0.8402 14 7 10.3923 1.3199 -1.0210 15 6 10.9463 0.6514 -2.2011 16 6 11.1222 1.7348 0.0546 17 6 12.6126 1.5801 0.2150 18 8 13.2355 1.6081 -1.0709 19 14 13.2734 2.9770 1.2555 20 6 10.2941 2.3046 0.9480 21 6 4.3608 1.9486 1.4086 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8031 2.2372 0.8900 26 1 1.8032 2.2372 -0.8899 27 1 4.5894 3.6584 -1.1065 28 1 3.4590 4.1215 0.2384 29 1 6.5154 2.1555 -0.5608 30 1 8.2912 1.3848 -1.5331 31 1 10.9400 -0.4272 -2.0442 32 1 10.3411 0.8950 -3.0743 33 1 11.9700 0.9891 -2.3628 34 1 12.8289 0.6298 0.7029 35 1 13.0848 2.4266 -1.5632 36 1 12.6103 2.9783 2.5842 37 1 14.7425 2.8364 1.4206 38 1 10.5659 2.7320 1.9019 39 1 3.6685 2.2681 2.1876 40 1 4.8856 1.0271 1.6605 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13287730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:39 Heat of formation + Delta-G solvation = 12.586039 kcal Electronic energy + Delta-G solvation = -21473.037289 eV Core-core repulsion = 18189.579346 eV Total energy + Delta-G solvation = -3283.457943 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.48931 -41.04918 -39.20011 -37.80015 -34.66939 -33.70243 -31.58782 -30.42309 -29.61367 -27.52817 -26.68707 -26.34574 -24.37959 -23.26163 -21.13118 -20.73128 -20.17243 -19.01265 -17.48800 -17.32101 -17.02184 -16.78239 -16.71890 -16.03394 -15.86699 -15.63172 -15.44955 -15.21986 -15.06781 -14.88143 -14.69355 -14.28029 -14.07447 -13.89578 -13.57267 -13.45453 -13.30700 -13.25500 -13.02393 -12.77965 -12.16636 -12.09408 -12.06415 -11.48715 -11.20353 -11.06082 -10.87969 -10.69939 -10.10956 -9.58423 -9.23425 -8.69447 -4.99688 0.71269 0.75068 1.01891 1.37330 1.63239 1.68573 1.88762 2.04579 2.24014 2.51325 3.29009 3.46878 3.53679 3.58525 3.75404 3.84673 3.88886 3.96079 4.28460 4.30414 4.31946 4.35449 4.39466 4.42244 4.44855 4.51034 4.55703 4.74611 4.78622 4.81504 4.86828 4.88616 4.94689 4.99958 5.04443 5.09275 5.22882 5.58275 5.66261 5.95009 6.23086 6.58779 6.62477 7.32197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.325 6.325 3 C -0.062 4.062 4 C -0.086 4.086 5 H 0.099 0.901 6 C -0.116 4.116 7 C 0.113 3.887 8 H 0.083 0.917 9 N -0.697 5.697 10 C 0.589 3.411 11 O -0.597 6.597 12 C -0.261 4.261 13 C 0.076 3.924 14 N -0.421 5.421 15 C 0.045 3.955 16 C -0.014 4.014 17 C -0.034 4.034 18 O -0.544 6.544 19 Si 0.788 3.212 20 C -0.168 4.168 21 C -0.145 4.145 22 H 0.087 0.913 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.413 0.587 30 H 0.209 0.791 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.398 0.602 36 H -0.300 1.300 37 H -0.284 1.284 38 H 0.131 0.869 39 H 0.093 0.907 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 1.103 -9.125 9.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.100 6.100 3 C -0.209 4.209 4 C -0.105 4.105 5 H 0.118 0.882 6 C -0.156 4.156 7 C 0.007 3.993 8 H 0.101 0.899 9 N -0.348 5.348 10 C 0.380 3.620 11 O -0.479 6.479 12 C -0.271 4.271 13 C -0.062 4.062 14 N -0.094 5.094 15 C -0.095 4.095 16 C -0.124 4.124 17 C -0.145 4.145 18 O -0.352 6.352 19 Si 0.693 3.307 20 C -0.192 4.192 21 C -0.184 4.184 22 H 0.105 0.895 23 H 0.122 0.878 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.128 0.872 29 H 0.250 0.750 30 H 0.226 0.774 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.249 0.751 36 H -0.227 1.227 37 H -0.211 1.211 38 H 0.149 0.851 39 H 0.112 0.888 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.443 0.063 -7.768 7.781 hybrid contribution -1.263 -0.011 0.256 1.289 sum -1.706 0.051 -7.512 7.703 Atomic orbital electron populations 1.23400 0.91773 1.07116 1.05734 1.87224 1.10238 1.14315 1.98190 1.23435 0.99392 0.92266 1.05849 1.22308 0.92360 0.98106 0.97717 0.88240 1.23329 0.96641 0.95716 0.99927 1.21824 0.83270 0.96988 0.97213 0.89903 1.45326 1.05376 1.61504 1.22637 1.17718 0.83454 0.77093 0.83758 1.90747 1.87579 1.46575 1.22972 1.20264 0.92966 1.14905 0.98965 1.22404 0.87042 0.99311 0.97411 1.43733 1.05956 1.43539 1.16180 1.22809 1.03635 0.98078 0.84950 1.20754 0.94846 1.06352 0.90433 1.24688 0.86563 1.10422 0.92840 1.86427 1.75026 1.44981 1.28774 0.93220 0.75677 0.83919 0.77876 1.21726 0.91730 1.05700 1.00054 1.23502 0.98615 0.98876 0.97402 0.89452 0.87843 0.89822 0.89365 0.88527 0.88856 0.87250 0.75004 0.77430 0.90846 0.87337 0.86249 0.86837 0.75094 1.22747 1.21062 0.85083 0.88830 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.31 10.76 113.37 1.22 1.53 16 2 S -0.33 -0.64 22.37 -56.49 -1.26 -1.91 16 3 C -0.06 0.21 5.78 71.98 0.42 0.63 16 4 C -0.09 0.32 3.53 -10.27 -0.04 0.29 16 5 H 0.10 -0.38 8.13 -2.39 -0.02 -0.40 16 6 C -0.12 0.66 7.39 31.12 0.23 0.89 16 7 C 0.11 0.11 4.32 45.52 0.20 0.31 16 8 H 0.08 0.51 7.47 -2.39 -0.02 0.49 16 9 N -0.70 -0.75 5.25 -443.45 -2.33 -3.08 16 10 C 0.59 5.57 7.81 86.62 0.68 6.25 16 11 O -0.60 -11.63 16.57 -4.11 -0.07 -11.70 16 12 C -0.26 -1.48 6.29 -19.04 -0.12 -1.60 16 13 C 0.08 -0.20 10.83 83.92 0.91 0.71 16 14 N -0.42 1.19 3.09 -533.24 -1.65 -0.45 16 15 C 0.04 -0.41 10.71 127.77 1.37 0.96 16 16 C -0.01 -0.02 6.14 40.98 0.25 0.23 16 17 C -0.03 0.05 2.98 71.24 0.21 0.27 16 18 O -0.54 2.77 9.95 -148.98 -1.48 1.29 16 19 Si 0.79 -0.46 31.29 68.60 2.15 1.68 16 20 C -0.17 -1.20 9.49 23.62 0.22 -0.98 16 21 C -0.15 -0.10 7.43 31.12 0.23 0.13 16 22 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 23 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H 0.09 -0.36 7.84 -2.39 -0.02 -0.37 16 26 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 28 H 0.11 -0.81 8.10 -2.39 -0.02 -0.83 16 29 H 0.41 -2.43 7.64 -92.71 -0.71 -3.14 16 30 H 0.21 -2.36 7.45 -2.91 -0.02 -2.38 16 31 H 0.07 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.11 -1.51 8.13 -2.39 -0.02 -1.53 16 33 H 0.12 -1.18 4.94 -2.39 -0.01 -1.19 16 34 H 0.11 -0.05 7.96 -2.39 -0.02 -0.07 16 35 H 0.40 -5.05 8.38 -74.06 -0.62 -5.67 16 36 H -0.30 -2.25 6.77 99.48 0.67 -1.58 16 37 H -0.28 -1.32 7.11 99.48 0.71 -0.61 16 38 H 0.13 1.36 6.67 -2.91 -0.02 1.34 16 39 H 0.09 0.03 7.90 -2.38 -0.02 0.01 16 40 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 Total: 0.00 -24.22 343.47 0.87 -23.35 By element: Atomic # 1 Polarization: -18.54 SS G_CDS: -0.27 Total: -18.81 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.78 Total: 9.62 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -3.97 Total: -3.53 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.55 Total: -10.41 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.15 Total: 1.68 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -1.26 Total: -1.91 kcal Total: -24.22 0.87 -23.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13287730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.938 kcal (2) G-P(sol) polarization free energy of solvation -24.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds