Wall clock time and date at job start Tue Mar 9 2021 13:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81406 * 103.00270 * 2 1 4 4 C 1.52997 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.08992 * 112.85102 * 316.19383 * 4 3 2 6 6 C 1.53783 * 113.61594 * 87.50395 * 4 3 2 7 7 C 1.53782 * 87.08179 * 139.97760 * 6 4 3 8 8 H 1.09003 * 113.69142 * 220.00831 * 7 6 4 9 9 N 1.46500 * 113.61456 * 89.11506 * 7 6 4 10 10 C 1.34777 * 119.99632 * 107.50306 * 9 7 6 11 11 O 1.21584 * 120.00427 * 359.97438 * 10 9 7 12 12 C 1.47603 * 119.99499 * 180.02562 * 10 9 7 13 13 C 1.39713 * 120.09216 * 0.27065 * 12 10 9 14 14 C 1.37718 * 119.91270 * 180.27012 * 13 12 10 15 15 C 1.50703 * 119.95692 * 179.73211 * 14 13 12 16 16 C 1.38979 * 120.08727 * 359.45610 * 14 13 12 17 17 O 1.35707 * 119.91070 * 180.24917 * 16 14 13 18 18 C 1.39015 * 120.17755 * 0.27873 * 16 14 13 19 19 C 1.50695 * 119.95893 * 180.02562 * 18 16 14 20 20 O 1.42903 * 109.47099 * 74.99403 * 19 18 16 21 21 Si 1.86300 * 109.47507 * 194.99615 * 19 18 16 22 22 C 1.37688 * 120.08592 * 359.97438 * 18 16 14 23 23 C 1.53784 * 113.60854 * 185.00002 * 4 3 2 24 24 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46657 * 299.99910 * 1 2 3 26 26 H 1.08997 * 109.46725 * 59.99719 * 1 2 3 27 27 H 1.09001 * 109.46884 * 59.99861 * 3 2 1 28 28 H 1.09005 * 109.46598 * 299.99960 * 3 2 1 29 29 H 1.08997 * 113.61059 * 25.42974 * 6 4 3 30 30 H 1.08994 * 113.61201 * 254.52604 * 6 4 3 31 31 H 0.96993 * 119.99931 * 287.49923 * 9 7 6 32 32 H 1.08000 * 120.04470 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.47152 * 269.72587 * 15 14 13 34 34 H 1.09001 * 109.46980 * 149.72687 * 15 14 13 35 35 H 1.09004 * 109.47113 * 29.72668 * 15 14 13 36 36 H 0.96706 * 113.99973 * 90.00439 * 17 16 14 37 37 H 1.09003 * 109.46747 * 314.99637 * 19 18 16 38 38 H 0.96703 * 113.99456 * 180.02562 * 20 19 18 39 39 H 1.48496 * 109.99652 * 300.00165 * 21 19 18 40 40 H 1.48498 * 109.99621 * 61.31303 * 21 19 18 41 41 H 1.08000 * 120.04298 * 180.02562 * 22 18 16 42 42 H 1.09000 * 113.61725 * 105.47345 * 23 4 3 43 43 H 1.08997 * 113.62034 * 334.56207 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.2449 1.2673 0.6943 6 6 4.3608 1.9484 -1.4086 7 6 5.2868 3.0702 -0.9095 8 1 5.4516 3.8605 -1.6420 9 7 6.5312 2.5811 -0.3107 10 6 7.6978 2.7227 -0.9707 11 8 7.7174 3.2559 -2.0632 12 6 8.9514 2.2294 -0.3675 13 6 8.9301 1.6103 0.8848 14 6 10.1027 1.1564 1.4465 15 6 10.0816 0.4939 2.8000 16 6 11.3046 1.3033 0.7644 17 8 12.4573 0.8502 1.3191 18 6 11.3293 1.9138 -0.4843 19 6 12.6353 2.0700 -1.2198 20 8 13.0331 0.8072 -1.7576 21 14 12.4245 3.2967 -2.6060 22 6 10.1620 2.3749 -1.0504 23 6 4.1963 3.4041 0.1221 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2371 -0.8901 29 1 3.6686 2.2679 -2.1876 30 1 4.8868 1.0275 -1.6600 31 1 6.5155 2.1554 0.5607 32 1 7.9959 1.4922 1.4137 33 1 10.2199 1.2474 3.5755 34 1 10.8862 -0.2392 2.8582 35 1 9.1237 -0.0055 2.9452 36 1 12.6684 -0.0663 1.0940 37 1 13.3998 2.4284 -0.5305 38 1 13.8679 0.8327 -2.2451 39 1 11.3847 2.8195 -3.5527 40 1 12.0417 4.6223 -2.0572 41 1 10.1820 2.8487 -2.0207 42 1 4.5896 3.6583 1.1064 43 1 3.4592 4.1215 -0.2385 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:43 Heat of formation + Delta-G solvation = -59.318210 kcal Electronic energy + Delta-G solvation = -24989.949277 eV Core-core repulsion = 21321.890910 eV Total energy + Delta-G solvation = -3668.058366 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.82585 -40.95479 -39.44378 -37.76572 -37.50270 -34.86677 -34.09632 -32.03157 -30.53033 -29.72509 -28.12814 -26.86001 -26.84465 -25.25482 -23.63372 -22.01935 -21.61982 -20.39608 -19.53574 -18.67006 -18.42190 -17.74904 -17.40008 -16.76086 -16.66196 -16.30376 -16.07027 -15.79364 -15.44900 -15.34455 -15.13014 -15.07944 -14.87057 -14.41772 -14.39566 -14.05446 -13.91926 -13.72162 -13.67215 -13.54782 -13.41430 -13.02788 -13.01760 -12.83647 -12.61982 -12.21285 -11.91370 -11.62205 -11.52017 -11.33280 -11.02344 -10.95264 -10.33969 -10.18148 -10.01689 -9.68681 -8.68164 -4.97360 -0.40915 0.03130 0.64965 1.27890 1.58070 1.60001 1.71192 1.95187 2.03180 2.53276 3.06020 3.22829 3.31173 3.41356 3.48596 3.58176 3.61300 3.70818 3.76346 3.91081 4.12351 4.12899 4.13649 4.18369 4.25383 4.27877 4.37163 4.41009 4.51162 4.58712 4.59903 4.61049 4.62494 4.71788 4.73592 4.91373 4.96065 4.96664 5.02897 5.04968 5.07951 5.23591 5.45285 5.52210 6.36909 6.54062 6.56076 7.11905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.265 6.265 3 C -0.075 4.075 4 C -0.096 4.096 5 H 0.098 0.902 6 C -0.142 4.142 7 C 0.119 3.881 8 H 0.108 0.892 9 N -0.708 5.708 10 C 0.565 3.435 11 O -0.531 6.531 12 C -0.139 4.139 13 C -0.065 4.065 14 C -0.116 4.116 15 C -0.109 4.109 16 C 0.162 3.838 17 O -0.487 6.487 18 C -0.105 4.105 19 C -0.065 4.065 20 O -0.547 6.547 21 Si 0.679 3.321 22 C -0.053 4.053 23 C -0.135 4.135 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.401 0.599 32 H 0.133 0.867 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.081 0.919 38 H 0.385 0.615 39 H -0.245 1.245 40 H -0.252 1.252 41 H 0.139 0.861 42 H 0.078 0.922 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -0.629 2.787 2.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.223 4.223 4 C -0.115 4.115 5 H 0.116 0.884 6 C -0.181 4.181 7 C 0.013 3.987 8 H 0.126 0.874 9 N -0.360 5.360 10 C 0.353 3.647 11 O -0.408 6.408 12 C -0.142 4.142 13 C -0.084 4.084 14 C -0.117 4.117 15 C -0.166 4.166 16 C 0.117 3.883 17 O -0.299 6.299 18 C -0.106 4.106 19 C -0.175 4.175 20 O -0.354 6.354 21 Si 0.580 3.420 22 C -0.071 4.071 23 C -0.175 4.175 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.237 0.763 32 H 0.151 0.849 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.258 0.742 37 H 0.099 0.901 38 H 0.233 0.767 39 H -0.170 1.170 40 H -0.177 1.177 41 H 0.157 0.843 42 H 0.097 0.903 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.100 -0.210 2.107 2.120 hybrid contribution -1.173 0.080 0.819 1.433 sum -1.273 -0.130 2.926 3.194 Atomic orbital electron populations 1.23394 0.93994 1.06744 1.04955 1.87035 1.07569 1.11223 1.98051 1.23427 0.99253 0.94583 1.05064 1.22387 0.92673 0.97473 0.98981 0.88356 1.23507 0.98463 0.99783 0.96346 1.21851 0.82648 0.97601 0.96570 0.87416 1.45542 1.06220 1.61690 1.22515 1.18115 0.83265 0.78556 0.84798 1.90811 1.86724 1.43111 1.20170 1.19754 0.93488 1.04611 0.96329 1.21086 0.98041 0.95654 0.93609 1.20202 0.91888 1.01190 0.98403 1.20701 1.03185 1.00462 0.92249 1.18262 0.85325 0.94963 0.89795 1.84674 1.38172 1.34184 1.72876 1.19612 0.94108 1.02315 0.94533 1.24535 0.95255 0.93922 1.03812 1.86431 1.44919 1.29618 1.74410 0.95442 0.88040 0.77418 0.81142 1.20985 0.90538 0.96406 0.99204 1.23405 0.97771 0.96293 1.00021 0.87960 0.90460 0.90426 0.89814 0.89784 0.88669 0.90519 0.76323 0.84879 0.90479 0.90878 0.91101 0.74231 0.90127 0.76746 1.16980 1.17695 0.84346 0.90313 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.14 10.76 101.05 1.09 1.23 16 2 S -0.26 -0.24 22.37 -107.50 -2.40 -2.65 16 3 C -0.08 0.10 5.78 37.16 0.21 0.31 16 4 C -0.10 0.15 3.53 -89.81 -0.32 -0.16 16 5 H 0.10 -0.14 8.13 -51.93 -0.42 -0.56 16 6 C -0.14 0.05 7.43 -25.92 -0.19 -0.15 16 7 C 0.12 0.00 4.32 -67.11 -0.29 -0.29 16 8 H 0.11 0.18 7.46 -51.93 -0.39 -0.21 16 9 N -0.71 -0.29 5.21 -54.03 -0.28 -0.57 16 10 C 0.56 2.18 7.76 -12.44 -0.10 2.08 16 11 O -0.53 -4.08 15.94 5.29 0.08 -3.99 16 12 C -0.14 -0.42 5.87 -104.96 -0.62 -1.04 16 13 C -0.07 -0.03 9.18 -39.22 -0.36 -0.39 16 14 C -0.12 -0.09 5.89 -104.54 -0.62 -0.70 16 15 C -0.11 0.16 9.79 36.01 0.35 0.51 16 16 C 0.16 0.31 6.66 -39.02 -0.26 0.05 16 17 O -0.49 -0.29 11.84 -18.83 -0.22 -0.51 16 18 C -0.10 -0.31 5.30 -104.54 -0.55 -0.86 16 19 C -0.06 -0.05 2.36 36.00 0.09 0.04 16 20 O -0.55 -0.01 12.86 -35.23 -0.45 -0.46 16 21 Si 0.68 0.32 30.20 -169.99 -5.13 -4.82 16 22 C -0.05 -0.22 8.20 -39.22 -0.32 -0.54 16 23 C -0.14 0.31 7.39 -25.91 -0.19 0.12 16 24 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.08 -0.14 8.14 -51.92 -0.42 -0.57 16 26 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 27 H 0.08 -0.16 8.14 -51.92 -0.42 -0.58 16 28 H 0.08 -0.14 7.84 -51.92 -0.41 -0.55 16 29 H 0.09 -0.07 7.89 -51.93 -0.41 -0.48 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.40 -0.88 6.72 -40.82 -0.27 -1.15 16 32 H 0.13 -0.36 6.39 -52.49 -0.34 -0.69 16 33 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 34 H 0.07 -0.13 7.52 -51.93 -0.39 -0.52 16 35 H 0.07 -0.19 8.08 -51.93 -0.42 -0.61 16 36 H 0.40 -1.14 9.06 45.56 0.41 -0.72 16 37 H 0.08 -0.02 7.82 -51.93 -0.41 -0.42 16 38 H 0.38 -1.85 8.74 45.56 0.40 -1.45 16 39 H -0.25 -0.97 6.75 56.52 0.38 -0.59 16 40 H -0.25 -0.87 7.11 56.52 0.40 -0.46 16 41 H 0.14 0.75 4.47 -52.49 -0.23 0.51 16 42 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 43 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 LS Contribution 367.73 15.07 5.54 5.54 Total: 0.00 -9.26 367.73 -10.42 -19.68 By element: Atomic # 1 Polarization: -6.96 SS G_CDS: -5.47 Total: -12.44 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.08 Total: 0.21 kcal Atomic # 7 Polarization: -0.29 SS G_CDS: -0.28 Total: -0.57 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.59 Total: -4.97 kcal Atomic # 14 Polarization: 0.32 SS G_CDS: -5.13 Total: -4.82 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.40 Total: -2.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -9.26 -10.42 -19.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.635 kcal (2) G-P(sol) polarization free energy of solvation -9.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds