Wall clock time and date at job start Tue Mar 9 2021 13:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81406 * 103.00270 * 2 1 4 4 C 1.52997 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.08992 * 112.85102 * 316.19383 * 4 3 2 6 6 C 1.53783 * 113.61594 * 87.50395 * 4 3 2 7 7 C 1.53782 * 87.08179 * 139.97760 * 6 4 3 8 8 H 1.09003 * 113.69142 * 220.00831 * 7 6 4 9 9 N 1.46500 * 113.61456 * 89.11506 * 7 6 4 10 10 C 1.34777 * 119.99632 * 107.50306 * 9 7 6 11 11 O 1.21584 * 120.00427 * 359.97438 * 10 9 7 12 12 C 1.47603 * 119.99499 * 180.02562 * 10 9 7 13 13 C 1.39713 * 120.09216 * 0.27065 * 12 10 9 14 14 C 1.37718 * 119.91270 * 180.27012 * 13 12 10 15 15 C 1.50703 * 119.95692 * 179.73211 * 14 13 12 16 16 C 1.38979 * 120.08727 * 359.45610 * 14 13 12 17 17 O 1.35707 * 119.91070 * 180.24917 * 16 14 13 18 18 C 1.39015 * 120.17755 * 0.27873 * 16 14 13 19 19 C 1.50695 * 119.95893 * 180.02562 * 18 16 14 20 20 O 1.42903 * 109.47099 * 74.99403 * 19 18 16 21 21 Si 1.86300 * 109.47507 * 194.99615 * 19 18 16 22 22 C 1.37688 * 120.08592 * 359.97438 * 18 16 14 23 23 C 1.53784 * 113.60854 * 185.00002 * 4 3 2 24 24 H 1.08995 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46657 * 299.99910 * 1 2 3 26 26 H 1.08997 * 109.46725 * 59.99719 * 1 2 3 27 27 H 1.09001 * 109.46884 * 59.99861 * 3 2 1 28 28 H 1.09005 * 109.46598 * 299.99960 * 3 2 1 29 29 H 1.08997 * 113.61059 * 25.42974 * 6 4 3 30 30 H 1.08994 * 113.61201 * 254.52604 * 6 4 3 31 31 H 0.96993 * 119.99931 * 287.49923 * 9 7 6 32 32 H 1.08000 * 120.04470 * 359.97438 * 13 12 10 33 33 H 1.09002 * 109.47152 * 269.72587 * 15 14 13 34 34 H 1.09001 * 109.46980 * 149.72687 * 15 14 13 35 35 H 1.09004 * 109.47113 * 29.72668 * 15 14 13 36 36 H 0.96706 * 113.99973 * 90.00439 * 17 16 14 37 37 H 1.09003 * 109.46747 * 314.99637 * 19 18 16 38 38 H 0.96703 * 113.99456 * 180.02562 * 20 19 18 39 39 H 1.48496 * 109.99652 * 300.00165 * 21 19 18 40 40 H 1.48498 * 109.99621 * 61.31303 * 21 19 18 41 41 H 1.08000 * 120.04298 * 180.02562 * 22 18 16 42 42 H 1.09000 * 113.61725 * 105.47345 * 23 4 3 43 43 H 1.08997 * 113.62034 * 334.56207 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.2449 1.2673 0.6943 6 6 4.3608 1.9484 -1.4086 7 6 5.2868 3.0702 -0.9095 8 1 5.4516 3.8605 -1.6420 9 7 6.5312 2.5811 -0.3107 10 6 7.6978 2.7227 -0.9707 11 8 7.7174 3.2559 -2.0632 12 6 8.9514 2.2294 -0.3675 13 6 8.9301 1.6103 0.8848 14 6 10.1027 1.1564 1.4465 15 6 10.0816 0.4939 2.8000 16 6 11.3046 1.3033 0.7644 17 8 12.4573 0.8502 1.3191 18 6 11.3293 1.9138 -0.4843 19 6 12.6353 2.0700 -1.2198 20 8 13.0331 0.8072 -1.7576 21 14 12.4245 3.2967 -2.6060 22 6 10.1620 2.3749 -1.0504 23 6 4.1963 3.4041 0.1221 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8032 2.2371 0.8900 28 1 1.8032 2.2371 -0.8901 29 1 3.6686 2.2679 -2.1876 30 1 4.8868 1.0275 -1.6600 31 1 6.5155 2.1554 0.5607 32 1 7.9959 1.4922 1.4137 33 1 10.2199 1.2474 3.5755 34 1 10.8862 -0.2392 2.8582 35 1 9.1237 -0.0055 2.9452 36 1 12.6684 -0.0663 1.0940 37 1 13.3998 2.4284 -0.5305 38 1 13.8679 0.8327 -2.2451 39 1 11.3847 2.8195 -3.5527 40 1 12.0417 4.6223 -2.0572 41 1 10.1820 2.8487 -2.0207 42 1 4.5896 3.6583 1.1064 43 1 3.4592 4.1215 -0.2385 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13287732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:42 Heat of formation + Delta-G solvation = -60.725941 kcal Electronic energy + Delta-G solvation = -24990.010321 eV Core-core repulsion = 21321.890910 eV Total energy + Delta-G solvation = -3668.119410 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96830 -41.01304 -39.58307 -37.78021 -37.59773 -35.03049 -34.15394 -32.10460 -30.49053 -29.63652 -28.10861 -26.92957 -26.78332 -25.37755 -23.65334 -22.08437 -21.77211 -20.41524 -19.59491 -18.81742 -18.42981 -17.85460 -17.41296 -16.83195 -16.73916 -16.39892 -16.22231 -15.81586 -15.52501 -15.46381 -15.13802 -15.10796 -14.92669 -14.33995 -14.32366 -14.02106 -13.96414 -13.77894 -13.67066 -13.56701 -13.36868 -13.03576 -12.94581 -12.89342 -12.70999 -12.20732 -12.16033 -11.58103 -11.56508 -11.34053 -11.28973 -10.91713 -10.38927 -10.34188 -10.11167 -9.78980 -8.72100 -5.10256 -0.55967 -0.09553 0.71568 1.19189 1.41501 1.53573 1.65389 1.82649 1.90365 2.37617 3.01482 3.20644 3.36177 3.39961 3.49144 3.49308 3.67352 3.74008 3.76935 3.83370 4.05806 4.23937 4.27850 4.28280 4.30375 4.32060 4.38016 4.46702 4.51339 4.61078 4.66973 4.71086 4.76049 4.77337 4.84883 4.88796 4.93830 4.96107 4.99187 5.07474 5.10972 5.20433 5.44490 5.49306 6.26213 6.63018 6.83185 6.93072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.324 6.324 3 C -0.062 4.062 4 C -0.087 4.087 5 H 0.100 0.900 6 C -0.143 4.143 7 C 0.107 3.893 8 H 0.086 0.914 9 N -0.690 5.690 10 C 0.560 3.440 11 O -0.583 6.583 12 C -0.154 4.154 13 C -0.054 4.054 14 C -0.116 4.116 15 C -0.108 4.108 16 C 0.161 3.839 17 O -0.489 6.489 18 C -0.124 4.124 19 C -0.059 4.059 20 O -0.557 6.557 21 Si 0.765 3.235 22 C -0.081 4.081 23 C -0.117 4.117 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.416 0.584 32 H 0.167 0.833 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.414 0.586 37 H 0.098 0.902 38 H 0.406 0.594 39 H -0.302 1.302 40 H -0.298 1.298 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 -1.315 5.160 5.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.098 6.098 3 C -0.210 4.210 4 C -0.106 4.106 5 H 0.118 0.882 6 C -0.182 4.182 7 C 0.002 3.998 8 H 0.104 0.896 9 N -0.341 5.341 10 C 0.349 3.651 11 O -0.464 6.464 12 C -0.157 4.157 13 C -0.073 4.073 14 C -0.116 4.116 15 C -0.164 4.164 16 C 0.115 3.885 17 O -0.303 6.303 18 C -0.125 4.125 19 C -0.170 4.170 20 O -0.367 6.367 21 Si 0.674 3.326 22 C -0.100 4.100 23 C -0.156 4.156 24 H 0.122 0.878 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.254 0.746 32 H 0.185 0.815 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.276 0.724 37 H 0.115 0.885 38 H 0.258 0.742 39 H -0.231 1.231 40 H -0.226 1.226 41 H 0.131 0.869 42 H 0.111 0.889 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.371 -0.935 4.514 4.625 hybrid contribution -1.139 0.278 0.056 1.174 sum -1.511 -0.657 4.570 4.858 Atomic orbital electron populations 1.23402 0.91725 1.07158 1.05742 1.87225 1.10283 1.14107 1.98191 1.23423 0.99180 0.92450 1.05934 1.22322 0.92625 0.97963 0.97688 0.88166 1.23500 0.98432 0.98668 0.97566 1.21960 0.82923 0.97401 0.97522 0.89562 1.45423 1.05454 1.60581 1.22666 1.18379 0.84394 0.78010 0.84315 1.90778 1.87475 1.45687 1.22443 1.19799 0.92603 1.05755 0.97560 1.21389 0.99580 0.93995 0.92325 1.20535 0.91356 1.00508 0.99246 1.20778 1.04503 1.00581 0.90582 1.18375 0.86213 0.94600 0.89340 1.84634 1.37624 1.35488 1.72573 1.19873 0.94389 1.02680 0.95544 1.24440 0.94969 0.94066 1.03545 1.86388 1.46616 1.28920 1.74793 0.94773 0.85538 0.74123 0.78176 1.20972 0.92109 0.98057 0.98880 1.23348 0.96491 0.95997 0.99796 0.87797 0.89471 0.89789 0.88506 0.89246 0.88423 0.92330 0.74559 0.81544 0.90030 0.90321 0.89303 0.72438 0.88464 0.74250 1.23097 1.22550 0.86935 0.88877 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.33 10.76 113.37 1.22 1.55 16 2 S -0.32 -0.56 22.37 -56.49 -1.26 -1.82 16 3 C -0.06 0.23 5.78 71.98 0.42 0.64 16 4 C -0.09 0.34 3.53 -10.27 -0.04 0.31 16 5 H 0.10 -0.39 8.13 -2.39 -0.02 -0.41 16 6 C -0.14 -0.02 7.43 31.12 0.23 0.21 16 7 C 0.11 0.09 4.32 45.52 0.20 0.29 16 8 H 0.09 0.48 7.46 -2.39 -0.02 0.47 16 9 N -0.69 -1.06 5.21 -443.12 -2.31 -3.37 16 10 C 0.56 5.63 7.76 86.72 0.67 6.30 16 11 O -0.58 -11.28 15.94 -3.98 -0.06 -11.35 16 12 C -0.15 -1.19 5.87 -20.08 -0.12 -1.31 16 13 C -0.05 -0.02 9.18 22.50 0.21 0.19 16 14 C -0.12 -0.04 5.89 -19.81 -0.12 -0.16 16 15 C -0.11 0.57 9.79 71.24 0.70 1.26 16 16 C 0.16 0.56 6.66 22.63 0.15 0.71 16 17 O -0.49 0.04 11.84 -90.28 -1.07 -1.03 16 18 C -0.12 -0.88 5.30 -19.81 -0.11 -0.98 16 19 C -0.06 -0.13 2.36 71.23 0.17 0.04 16 20 O -0.56 0.07 12.86 -148.98 -1.92 -1.85 16 21 Si 0.77 2.63 30.20 68.60 2.07 4.70 16 22 C -0.08 -0.92 8.20 22.51 0.18 -0.73 16 23 C -0.12 0.67 7.39 31.12 0.23 0.90 16 24 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 26 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.09 -0.40 7.84 -2.39 -0.02 -0.42 16 29 H 0.10 -0.05 7.89 -2.39 -0.02 -0.06 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.42 -2.14 6.72 -92.71 -0.62 -2.76 16 32 H 0.17 -1.25 6.39 -2.91 -0.02 -1.27 16 33 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.08 -0.47 7.52 -2.39 -0.02 -0.48 16 35 H 0.09 -0.76 8.08 -2.38 -0.02 -0.78 16 36 H 0.41 -2.97 9.06 -74.05 -0.67 -3.64 16 37 H 0.10 -0.10 7.82 -2.39 -0.02 -0.12 16 38 H 0.41 -4.22 8.74 -74.06 -0.65 -4.87 16 39 H -0.30 -3.85 6.75 99.48 0.67 -3.17 16 40 H -0.30 -3.14 7.11 99.48 0.71 -2.43 16 41 H 0.11 1.76 4.47 -2.91 -0.01 1.75 16 42 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H 0.11 -0.86 8.10 -2.39 -0.02 -0.88 16 Total: 0.00 -25.94 367.73 -1.43 -27.37 By element: Atomic # 1 Polarization: -20.99 SS G_CDS: -0.88 Total: -21.87 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 4.00 Total: 9.21 kcal Atomic # 7 Polarization: -1.06 SS G_CDS: -2.31 Total: -3.37 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -3.05 Total: -14.23 kcal Atomic # 14 Polarization: 2.63 SS G_CDS: 2.07 Total: 4.70 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.26 Total: -1.82 kcal Total: -25.94 -1.43 -27.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13287732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.355 kcal (2) G-P(sol) polarization free energy of solvation -25.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds