Wall clock time and date at job start Tue Mar 9 2021 13:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 103.00143 * 2 1 4 4 C 1.53000 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.08990 * 112.85361 * 45.33479 * 4 3 2 6 6 C 1.53787 * 113.61270 * 176.53257 * 4 3 2 7 7 C 1.53778 * 87.08069 * 139.97924 * 6 4 3 8 8 H 1.09006 * 113.60963 * 220.01741 * 7 6 4 9 9 N 1.46498 * 113.61444 * 89.19909 * 7 6 4 10 10 C 1.34783 * 119.99720 * 154.99832 * 9 7 6 11 11 O 1.21592 * 120.00208 * 0.02562 * 10 9 7 12 12 C 1.47560 * 119.99998 * 179.97438 * 10 9 7 13 13 C 1.39836 * 119.99655 * 359.72359 * 12 10 9 14 14 C 1.36561 * 119.99594 * 179.74108 * 13 12 10 15 15 C 1.39827 * 120.00130 * 0.53776 * 14 13 12 16 16 C 1.47557 * 119.99994 * 179.71887 * 15 14 13 17 17 C 1.34981 * 125.27583 * 359.74014 * 16 15 14 18 18 C 1.37809 * 114.69714 * 179.79415 * 17 16 15 19 19 C 1.33740 * 115.07966 * 0.49488 * 18 17 16 20 20 C 1.50704 * 125.11699 * 179.74941 * 19 18 17 21 21 O 1.42895 * 109.47161 * 300.00817 * 20 19 18 22 22 Si 1.86293 * 109.47120 * 180.02562 * 20 19 18 23 23 S 1.75855 * 109.76478 * 359.73533 * 19 18 17 24 24 C 1.39824 * 120.00004 * 359.73317 * 15 14 13 25 25 C 1.36563 * 120.00250 * 359.97438 * 24 15 14 26 26 C 1.53783 * 113.61182 * 274.13530 * 4 3 2 27 27 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46846 * 299.99983 * 1 2 3 29 29 H 1.09007 * 109.47453 * 59.99610 * 1 2 3 30 30 H 1.09002 * 109.47124 * 60.00087 * 3 2 1 31 31 H 1.09001 * 109.46975 * 300.00209 * 3 2 1 32 32 H 1.09000 * 113.61079 * 254.52465 * 6 4 3 33 33 H 1.09002 * 113.61333 * 25.42742 * 6 4 3 34 34 H 0.96997 * 120.00249 * 334.99374 * 9 7 6 35 35 H 1.07998 * 120.00354 * 359.97438 * 13 12 10 36 36 H 1.07994 * 120.00301 * 180.25007 * 14 13 12 37 37 H 1.07996 * 122.64687 * 0.02562 * 17 16 15 38 38 H 1.08002 * 122.45228 * 180.23191 * 18 17 16 39 39 H 1.08998 * 109.46947 * 60.00717 * 20 19 18 40 40 H 0.96705 * 114.00112 * 299.99901 * 21 20 19 41 41 H 1.48499 * 110.00245 * 58.67951 * 22 20 19 42 42 H 1.48500 * 109.99920 * 180.02562 * 22 20 19 43 43 H 1.08005 * 119.99806 * 180.02562 * 24 15 14 44 44 H 1.07996 * 120.00389 * 179.97438 * 25 24 15 45 45 H 1.09003 * 113.61584 * 334.56887 * 26 4 3 46 46 H 1.09000 * 113.61286 * 105.47141 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2422 1.2861 -0.7152 6 6 4.1959 3.4069 -0.0859 7 6 5.2903 3.0456 0.9322 8 1 5.4569 3.8154 1.6857 9 7 6.5330 2.5745 0.3157 10 6 7.7018 2.6989 0.9753 11 8 7.7248 3.2017 2.0821 12 6 8.9534 2.2240 0.3546 13 6 8.9260 1.6396 -0.9155 14 6 10.0850 1.2048 -1.4922 15 6 11.2976 1.3338 -0.8079 16 6 12.5491 0.8584 -1.4284 17 6 12.6457 0.2804 -2.6444 18 6 13.9249 -0.0770 -3.0120 19 6 14.8713 0.1931 -2.1065 20 6 16.3392 -0.1062 -2.2711 21 8 16.5214 -1.5119 -2.4516 22 14 17.2604 0.4486 -0.7498 23 16 14.1453 0.9502 -0.6951 24 6 11.3242 1.9130 0.4644 25 6 10.1660 2.3532 1.0387 26 6 4.3664 1.9082 1.4045 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 1.8032 2.2372 0.8900 31 1 1.8031 2.2371 -0.8900 32 1 4.5855 3.6872 -1.0646 33 1 3.4601 4.1143 0.2965 34 1 6.5146 2.1731 -0.5671 35 1 7.9888 1.5354 -1.4420 36 1 10.0645 0.7571 -2.4747 37 1 11.7888 0.1147 -3.2805 38 1 14.1461 -0.5448 -3.9600 39 1 16.7228 0.4247 -3.1423 40 1 16.2020 -2.0481 -1.7129 41 1 16.7251 -0.2448 0.4493 42 1 18.7092 0.1596 -0.8998 43 1 12.2609 2.0130 0.9928 44 1 10.1865 2.8002 2.0216 45 1 3.6774 2.2052 2.1952 46 1 4.8934 0.9804 1.6273 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13308390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:54 Heat of formation + Delta-G solvation = 23.263976 kcal Electronic energy + Delta-G solvation = -27402.804046 eV Core-core repulsion = 23477.718969 eV Total energy + Delta-G solvation = -3925.085077 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.095 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.64646 -40.41770 -39.46104 -38.89149 -37.47402 -34.93420 -33.42826 -32.27124 -30.85816 -30.21458 -29.58970 -27.26247 -26.71263 -24.99051 -24.08166 -23.78392 -23.23359 -21.88730 -20.32710 -20.27603 -19.22911 -18.67856 -17.70141 -17.42721 -17.07530 -16.65210 -16.35884 -16.28453 -16.24351 -16.17242 -15.72427 -15.58836 -15.34593 -15.05447 -14.94693 -14.54653 -14.45443 -14.35818 -14.21574 -13.88919 -13.80213 -13.62861 -13.60678 -13.33946 -13.29424 -13.09063 -12.82715 -12.54949 -12.42296 -12.09716 -12.08732 -11.52449 -11.51860 -11.23636 -11.15244 -10.88045 -10.87441 -10.65559 -10.19573 -10.14485 -9.54886 -9.03330 -8.68956 -5.08726 -0.89572 0.24698 0.33436 0.39235 0.74891 0.76632 1.20304 1.52424 1.55333 1.68724 1.84357 1.94566 2.00415 2.81824 3.30352 3.40361 3.44078 3.56230 3.64277 3.68719 3.72367 3.75755 3.83383 3.84400 4.19403 4.28027 4.30557 4.31057 4.33941 4.41330 4.42582 4.52186 4.52866 4.56428 4.62254 4.73932 4.77694 4.83699 4.87227 4.91714 5.01098 5.02426 5.05865 5.10490 5.16583 5.22687 5.28716 5.31977 5.48359 5.55597 5.72887 6.37007 6.42066 7.09757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.324 6.324 3 C -0.062 4.062 4 C -0.088 4.088 5 H 0.100 0.900 6 C -0.118 4.118 7 C 0.111 3.889 8 H 0.087 0.913 9 N -0.694 5.694 10 C 0.559 3.441 11 O -0.579 6.579 12 C -0.151 4.151 13 C -0.068 4.068 14 C -0.109 4.109 15 C 0.007 3.993 16 C -0.160 4.160 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.218 4.218 20 C -0.033 4.033 21 O -0.539 6.539 22 Si 0.709 3.291 23 S 0.123 5.877 24 C -0.128 4.128 25 C -0.063 4.063 26 C -0.143 4.143 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.414 0.586 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.140 0.860 40 H 0.388 0.612 41 H -0.267 1.267 42 H -0.271 1.271 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.095 0.905 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 1.803 -5.381 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.098 6.098 3 C -0.210 4.210 4 C -0.107 4.107 5 H 0.118 0.882 6 C -0.158 4.158 7 C 0.005 3.995 8 H 0.106 0.894 9 N -0.346 5.346 10 C 0.348 3.652 11 O -0.460 6.460 12 C -0.154 4.154 13 C -0.086 4.086 14 C -0.128 4.128 15 C 0.005 3.995 16 C -0.277 4.277 17 C -0.146 4.146 18 C -0.140 4.140 19 C -0.336 4.336 20 C -0.146 4.146 21 O -0.347 6.347 22 Si 0.611 3.389 23 S 0.390 5.610 24 C -0.147 4.147 25 C -0.082 4.082 26 C -0.182 4.182 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.253 0.747 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.184 0.816 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.237 0.763 41 H -0.193 1.193 42 H -0.197 1.197 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.114 0.886 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.519 1.773 -3.104 3.884 hybrid contribution -1.602 -0.966 -1.191 2.217 sum -3.121 0.807 -4.295 5.370 Atomic orbital electron populations 1.23400 0.91827 1.07112 1.05718 1.87222 1.10174 1.14208 1.98188 1.23429 0.99362 0.92347 1.05856 1.22334 0.92442 0.98023 0.97941 0.88227 1.23340 0.96640 0.95762 1.00021 1.21931 0.83100 0.97253 0.97204 0.89440 1.45471 1.05566 1.62122 1.21439 1.18488 0.84377 0.77685 0.84621 1.90780 1.87472 1.46257 1.21525 1.20006 0.92979 1.05345 0.97116 1.21246 0.99974 0.94649 0.92764 1.21191 0.90311 1.00049 1.01285 1.18465 0.91334 0.96219 0.93468 1.23170 0.96083 1.08852 0.99607 1.20644 0.99095 0.99504 0.95399 1.20189 0.91461 1.01318 1.01073 1.25101 1.00745 1.09245 0.98507 1.24456 0.92409 0.84936 1.12759 1.86599 1.84565 1.16179 1.47384 0.94468 0.79020 0.90983 0.74403 1.84213 0.98678 1.59237 1.18840 1.21037 0.98780 0.99850 0.95031 1.20947 0.91274 0.96189 0.99812 1.23521 0.98489 0.98733 0.97453 0.87857 0.89792 0.89517 0.89271 0.88637 0.88935 0.87113 0.74703 0.82180 0.82195 0.81640 0.82792 0.84244 0.76286 1.19263 1.19687 0.84744 0.85267 0.88627 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.37 10.76 113.37 1.22 1.59 16 2 S -0.32 -0.40 22.38 -56.49 -1.26 -1.66 16 3 C -0.06 0.27 5.76 71.98 0.41 0.68 16 4 C -0.09 0.43 3.52 -10.26 -0.04 0.40 16 5 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 6 C -0.12 0.82 7.39 31.12 0.23 1.05 16 7 C 0.11 -0.11 4.33 45.58 0.20 0.08 16 8 H 0.09 0.30 7.46 -2.38 -0.02 0.29 16 9 N -0.69 0.73 5.21 -442.88 -2.31 -1.58 16 10 C 0.56 3.32 7.76 86.70 0.67 3.99 16 11 O -0.58 -8.54 15.93 -4.00 -0.06 -8.60 16 12 C -0.15 -0.41 5.88 -20.05 -0.12 -0.53 16 13 C -0.07 0.24 9.48 22.26 0.21 0.45 16 14 C -0.11 0.38 9.48 22.26 0.21 0.59 16 15 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 16 C -0.16 -0.01 6.37 23.98 0.15 0.14 16 17 C -0.12 0.26 9.64 21.42 0.21 0.46 16 18 C -0.11 0.16 10.00 21.15 0.21 0.37 16 19 C -0.22 0.17 5.73 24.66 0.14 0.32 16 20 C -0.03 0.05 2.96 71.24 0.21 0.26 16 21 O -0.54 -0.57 12.86 -148.98 -1.92 -2.49 16 22 Si 0.71 -0.85 30.96 68.60 2.12 1.28 16 23 S 0.12 -0.01 19.46 -56.49 -1.10 -1.11 16 24 C -0.13 -0.27 9.54 22.26 0.21 -0.06 16 25 C -0.06 -0.28 9.53 22.26 0.21 -0.06 16 26 C -0.14 0.17 7.44 31.18 0.23 0.40 16 27 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 28 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.09 -0.45 7.88 -2.39 -0.02 -0.47 16 31 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.11 -0.95 8.10 -2.39 -0.02 -0.97 16 34 H 0.41 -3.02 6.71 -92.71 -0.62 -3.64 16 35 H 0.16 -1.69 6.38 -2.91 -0.02 -1.71 16 36 H 0.16 -1.44 6.74 -2.91 -0.02 -1.46 16 37 H 0.17 -1.18 6.88 -2.91 -0.02 -1.20 16 38 H 0.15 -0.51 8.06 -2.91 -0.02 -0.54 16 39 H 0.14 -0.56 7.96 -2.39 -0.02 -0.57 16 40 H 0.39 -1.56 8.70 -74.05 -0.64 -2.20 16 41 H -0.27 -0.82 7.11 99.48 0.71 -0.12 16 42 H -0.27 -1.33 7.11 99.48 0.71 -0.62 16 43 H 0.13 0.03 7.26 -2.91 -0.02 0.01 16 44 H 0.13 0.77 7.64 -2.91 -0.02 0.75 16 45 H 0.10 -0.15 7.92 -2.39 -0.02 -0.16 16 46 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 Total: 0.00 -19.62 407.14 -0.27 -19.89 By element: Atomic # 1 Polarization: -15.53 SS G_CDS: -0.21 Total: -15.74 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 4.46 Total: 10.01 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -2.31 Total: -1.58 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.98 Total: -11.09 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: 2.12 Total: 1.28 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -2.36 Total: -2.77 kcal Total: -19.62 -0.27 -19.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13308390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.158 kcal (2) G-P(sol) polarization free energy of solvation -19.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds