Wall clock time and date at job start Tue Mar 9 2021 13:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81396 * 102.99931 * 2 1 4 4 C 1.53004 * 109.47273 * 180.02562 * 3 2 1 5 5 H 1.09000 * 112.84485 * 316.19155 * 4 3 2 6 6 C 1.53776 * 113.68938 * 87.46122 * 4 3 2 7 7 C 1.53782 * 87.08006 * 139.99475 * 6 4 3 8 8 H 1.09002 * 113.69482 * 220.00942 * 7 6 4 9 9 N 1.46496 * 113.61688 * 89.11498 * 7 6 4 10 10 C 1.34777 * 120.00344 * 107.50083 * 9 7 6 11 11 O 1.21588 * 119.99780 * 359.73119 * 10 9 7 12 12 C 1.47536 * 120.00185 * 180.02562 * 10 9 7 13 13 C 1.40141 * 120.19143 * 179.72930 * 12 10 9 14 14 O 1.35653 * 120.14644 * 359.95301 * 13 12 10 15 15 C 1.38704 * 119.69955 * 179.97438 * 13 12 10 16 16 C 1.38058 * 120.08263 * 359.97048 * 15 13 12 17 17 C 1.50699 * 119.80136 * 180.02562 * 16 15 13 18 18 O 1.42893 * 109.47381 * 65.00294 * 17 16 15 19 19 Si 1.86302 * 109.47013 * 185.00342 * 17 16 15 20 20 C 1.38549 * 120.39241 * 0.05028 * 16 15 13 21 21 C 1.37789 * 120.29800 * 359.69596 * 20 16 15 22 22 C 1.53784 * 87.08193 * 334.56420 * 7 6 4 23 23 H 1.09001 * 109.47102 * 60.00214 * 1 2 3 24 24 H 1.09001 * 109.47084 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47369 * 300.00275 * 1 2 3 26 26 H 1.09001 * 109.47463 * 59.99684 * 3 2 1 27 27 H 1.09002 * 109.47178 * 299.99878 * 3 2 1 28 28 H 1.08997 * 113.61707 * 25.44769 * 6 4 3 29 29 H 1.09002 * 113.61258 * 254.53968 * 6 4 3 30 30 H 0.97004 * 120.00009 * 287.50930 * 9 7 6 31 31 H 0.96700 * 114.00093 * 90.00585 * 14 13 12 32 32 H 1.07997 * 119.95882 * 179.97438 * 15 13 12 33 33 H 1.09000 * 109.47585 * 305.00167 * 17 16 15 34 34 H 0.96708 * 114.00417 * 180.02562 * 18 17 16 35 35 H 1.48501 * 110.00160 * 299.99726 * 19 17 16 36 36 H 1.48500 * 110.00353 * 61.31731 * 19 17 16 37 37 H 1.07998 * 119.84484 * 179.97438 * 20 16 15 38 38 H 1.08003 * 120.03908 * 180.30411 * 21 20 16 39 39 H 1.09005 * 113.61434 * 139.97185 * 22 7 6 40 40 H 1.08991 * 113.61914 * 270.88565 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.2449 1.2673 0.6944 6 6 4.3627 1.9478 -1.4077 7 6 5.2881 3.0697 -0.9079 8 1 5.4540 3.8596 -1.6404 9 7 6.5316 2.5808 -0.3071 10 6 7.6991 2.7219 -0.9654 11 8 7.7197 3.2506 -2.0601 12 6 8.9513 2.2290 -0.3606 13 6 10.1667 2.3685 -1.0441 14 8 10.1975 2.9569 -2.2660 15 6 11.3379 1.9020 -0.4657 16 6 11.3049 1.3036 0.7780 17 6 12.5812 0.7994 1.4007 18 8 13.4486 1.9028 1.6691 19 14 12.1885 -0.0835 2.9935 20 6 10.1052 1.1633 1.4567 21 6 8.9330 1.6258 0.8994 22 6 4.1962 3.4042 0.1221 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8031 2.2371 0.8899 27 1 1.8031 2.2371 -0.8900 28 1 3.6716 2.2670 -2.1878 29 1 4.8890 1.0267 -1.6580 30 1 6.5146 2.1553 0.5645 31 1 10.3310 3.9142 -2.2384 32 1 12.2768 2.0070 -0.9889 33 1 13.0726 0.1096 0.7146 34 1 14.2915 1.6519 2.0712 35 1 11.5183 0.8462 3.9378 36 1 11.3128 -1.2522 2.7240 37 1 10.0895 0.6935 2.4290 38 1 8.0009 1.5187 1.4343 39 1 4.5881 3.6586 1.1069 40 1 3.4596 4.1214 -0.2398 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:57 Heat of formation + Delta-G solvation = -51.666544 kcal Electronic energy + Delta-G solvation = -22929.427009 eV Core-core repulsion = 19417.238062 eV Total energy + Delta-G solvation = -3512.188946 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89965 -40.74451 -39.27467 -38.37632 -37.23657 -34.88438 -32.92042 -31.27578 -30.59455 -29.66643 -27.55592 -26.76541 -24.38495 -23.99178 -23.26549 -21.88687 -20.37608 -19.41570 -18.85174 -18.43248 -17.72822 -17.38985 -16.75140 -16.72648 -16.44249 -16.17011 -15.89986 -15.64025 -15.34523 -15.24752 -15.03156 -14.69759 -14.30529 -14.18782 -14.06726 -13.92759 -13.66402 -13.43410 -13.37199 -13.03766 -12.86764 -12.50842 -12.16834 -12.13129 -11.87293 -11.56372 -11.28607 -11.02830 -10.92298 -10.46317 -10.26049 -10.10143 -9.91963 -8.73474 -4.91561 -0.55880 -0.02283 0.70824 1.27305 1.54657 1.64743 1.69102 1.90795 1.95766 2.40761 3.01002 3.23831 3.37977 3.43902 3.50761 3.58692 3.67317 3.72125 3.78631 3.99902 4.10894 4.23320 4.23978 4.27531 4.30267 4.37623 4.47597 4.53137 4.61796 4.68345 4.72353 4.77499 4.81750 4.83977 4.95609 4.98421 5.02130 5.08907 5.11101 5.42433 5.50449 6.33800 6.61662 6.87039 7.03847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.326 6.326 3 C -0.061 4.061 4 C -0.089 4.089 5 H 0.096 0.904 6 C -0.143 4.143 7 C 0.112 3.888 8 H 0.090 0.910 9 N -0.698 5.698 10 C 0.560 3.440 11 O -0.558 6.558 12 C -0.181 4.181 13 C 0.160 3.840 14 O -0.493 6.493 15 C -0.135 4.135 16 C -0.040 4.040 17 C -0.089 4.089 18 O -0.562 6.562 19 Si 0.778 3.222 20 C -0.154 4.154 21 C -0.054 4.054 22 C -0.117 4.117 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.412 0.588 31 H 0.410 0.590 32 H 0.147 0.853 33 H 0.097 0.903 34 H 0.406 0.594 35 H -0.286 1.286 36 H -0.285 1.285 37 H 0.137 0.863 38 H 0.163 0.837 39 H 0.090 0.910 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -0.492 6.649 6.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.101 6.101 3 C -0.209 4.209 4 C -0.108 4.108 5 H 0.115 0.885 6 C -0.182 4.182 7 C 0.007 3.993 8 H 0.108 0.892 9 N -0.350 5.350 10 C 0.348 3.652 11 O -0.437 6.437 12 C -0.185 4.185 13 C 0.113 3.887 14 O -0.306 6.306 15 C -0.153 4.153 16 C -0.040 4.040 17 C -0.199 4.199 18 O -0.372 6.372 19 Si 0.682 3.318 20 C -0.171 4.171 21 C -0.072 4.072 22 C -0.157 4.157 23 H 0.103 0.897 24 H 0.122 0.878 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.250 0.750 31 H 0.270 0.730 32 H 0.165 0.835 33 H 0.115 0.885 34 H 0.258 0.742 35 H -0.214 1.214 36 H -0.212 1.212 37 H 0.154 0.846 38 H 0.180 0.820 39 H 0.109 0.891 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.163 -1.470 5.945 6.126 hybrid contribution -1.010 1.331 -0.331 1.703 sum -0.847 -0.139 5.613 5.678 Atomic orbital electron populations 1.23401 0.91630 1.07160 1.05768 1.87246 1.10387 1.14259 1.98195 1.23422 0.99201 0.92341 1.05937 1.22325 0.92581 0.98069 0.97825 0.88548 1.23499 0.98536 0.98778 0.97400 1.21892 0.82915 0.97217 0.97279 0.89220 1.45490 1.05678 1.61153 1.22674 1.18205 0.83928 0.78473 0.84568 1.90803 1.87130 1.44588 1.21153 1.20431 0.93631 1.07405 0.97025 1.18736 0.91231 0.94484 0.84225 1.84704 1.94928 1.27301 1.23690 1.21413 0.98104 1.00392 0.95389 1.19849 0.94788 0.95668 0.93730 1.24997 0.90673 0.94003 1.10182 1.86433 1.33038 1.32407 1.85370 0.94051 0.86105 0.76115 0.75485 1.21058 0.92680 1.02902 1.00483 1.21373 0.99544 0.93822 0.92503 1.23347 0.96680 0.95821 0.99855 0.89721 0.87806 0.89473 0.88575 0.89134 0.88401 0.92565 0.75048 0.73004 0.83493 0.88531 0.74211 1.21370 1.21194 0.84600 0.81984 0.89098 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.28 10.76 113.37 1.22 1.50 16 2 S -0.33 -0.78 22.37 -56.49 -1.26 -2.05 16 3 C -0.06 0.19 5.78 71.98 0.42 0.61 16 4 C -0.09 0.30 3.53 -10.27 -0.04 0.26 16 5 H 0.10 -0.26 8.13 -2.39 -0.02 -0.28 16 6 C -0.14 -0.06 7.43 31.12 0.23 0.17 16 7 C 0.11 0.06 4.32 45.52 0.20 0.25 16 8 H 0.09 0.41 7.47 -2.39 -0.02 0.39 16 9 N -0.70 -0.89 5.21 -443.20 -2.31 -3.20 16 10 C 0.56 4.70 7.76 86.70 0.67 5.38 16 11 O -0.56 -8.96 14.76 16.93 0.25 -8.71 16 12 C -0.18 -1.15 5.89 -20.01 -0.12 -1.27 16 13 C 0.16 1.28 6.72 22.84 0.15 1.43 16 14 O -0.49 -4.66 11.58 -68.77 -0.80 -5.46 16 15 C -0.13 -0.70 9.60 22.34 0.21 -0.49 16 16 C -0.04 -0.13 5.39 -19.83 -0.11 -0.24 16 17 C -0.09 0.22 2.78 71.24 0.20 0.42 16 18 O -0.56 1.25 12.80 -148.98 -1.91 -0.66 16 19 Si 0.78 -3.72 29.83 68.60 2.05 -1.68 16 20 C -0.15 -0.35 8.64 22.24 0.19 -0.16 16 21 C -0.05 -0.06 9.53 22.52 0.21 0.15 16 22 C -0.12 0.65 7.39 31.12 0.23 0.88 16 23 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H 0.09 -0.38 7.85 -2.39 -0.02 -0.40 16 28 H 0.10 -0.04 7.90 -2.39 -0.02 -0.05 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.41 -1.80 6.73 -92.71 -0.62 -2.42 16 31 H 0.41 0.90 9.06 -74.06 -0.67 0.23 16 32 H 0.15 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.10 -0.57 7.96 -2.39 -0.02 -0.59 16 34 H 0.41 -5.16 8.74 -74.05 -0.65 -5.81 16 35 H -0.29 -0.42 7.04 99.48 0.70 0.28 16 36 H -0.28 -0.16 7.11 99.48 0.71 0.55 16 37 H 0.14 0.00 4.83 -2.91 -0.01 -0.02 16 38 H 0.16 -0.96 6.41 -2.91 -0.02 -0.98 16 39 H 0.09 -0.67 8.14 -2.38 -0.02 -0.69 16 40 H 0.11 -0.87 8.10 -2.39 -0.02 -0.89 16 Total: 0.00 -23.35 346.33 -1.12 -24.47 By element: Atomic # 1 Polarization: -10.80 SS G_CDS: -0.82 Total: -11.62 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 3.68 Total: 8.90 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -2.31 Total: -3.20 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -2.45 Total: -14.83 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.05 Total: -1.68 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -1.26 Total: -2.05 kcal Total: -23.35 -1.12 -24.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.193 kcal (2) G-P(sol) polarization free energy of solvation -23.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds