Wall clock time and date at job start Tue Mar 9 2021 13:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81401 * 102.99821 * 2 1 4 4 C 1.52997 * 109.47503 * 179.97438 * 3 2 1 5 5 H 1.09003 * 112.84376 * 316.20184 * 4 3 2 6 6 C 1.53783 * 113.61314 * 87.49838 * 4 3 2 7 7 C 1.53783 * 87.07906 * 139.98325 * 6 4 3 8 8 H 1.08994 * 113.69301 * 220.00945 * 7 6 4 9 9 N 1.46504 * 113.61316 * 89.11585 * 7 6 4 10 10 C 1.34777 * 119.99854 * 107.50055 * 9 7 6 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 C 1.47537 * 120.00133 * 180.27865 * 10 9 7 13 13 C 1.40135 * 120.19628 * 179.72976 * 12 10 9 14 14 O 1.35657 * 120.14744 * 359.94872 * 13 12 10 15 15 C 1.38702 * 119.70142 * 179.97438 * 13 12 10 16 16 C 1.50705 * 119.95628 * 179.97438 * 15 13 12 17 17 O 1.42901 * 109.47500 * 285.00072 * 16 15 13 18 18 Si 1.86298 * 109.47051 * 164.99692 * 16 15 13 19 19 C 1.38055 * 120.08951 * 359.97438 * 15 13 12 20 20 C 1.38551 * 120.38488 * 0.02562 * 19 15 13 21 21 C 1.50702 * 119.84578 * 180.02562 * 20 19 15 22 22 C 1.37790 * 120.29825 * 359.73988 * 20 19 15 23 23 C 1.53774 * 113.61693 * 184.99853 * 4 3 2 24 24 H 1.09000 * 109.47412 * 299.99493 * 1 2 3 25 25 H 1.09004 * 109.47339 * 60.00401 * 1 2 3 26 26 H 1.09007 * 109.46970 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47095 * 59.99828 * 3 2 1 28 28 H 1.09000 * 109.47138 * 300.00329 * 3 2 1 29 29 H 1.08995 * 113.61226 * 25.44065 * 6 4 3 30 30 H 1.08996 * 113.61645 * 254.53406 * 6 4 3 31 31 H 0.97000 * 120.00410 * 287.50780 * 9 7 6 32 32 H 0.96705 * 113.99674 * 89.99935 * 14 13 12 33 33 H 1.09004 * 109.46783 * 45.00193 * 16 15 13 34 34 H 0.96701 * 113.99339 * 300.00396 * 17 16 15 35 35 H 1.48500 * 110.00033 * 179.97438 * 18 16 15 36 36 H 1.48500 * 110.00351 * 301.32234 * 18 16 15 37 37 H 1.07993 * 119.80975 * 179.97438 * 19 15 13 38 38 H 1.08993 * 109.47507 * 90.00384 * 21 20 19 39 39 H 1.09004 * 109.46236 * 209.99914 * 21 20 19 40 40 H 1.08994 * 109.46999 * 329.99382 * 21 20 19 41 41 H 1.08002 * 120.04123 * 180.25671 * 22 20 19 42 42 H 1.09004 * 113.61080 * 105.47048 * 23 4 3 43 43 H 1.08995 * 113.61678 * 334.56777 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9401 0.0006 5 1 4.2442 1.2675 0.6962 6 6 4.3618 1.9483 -1.4068 7 6 5.2873 3.0703 -0.9072 8 1 5.4527 3.8604 -1.6396 9 7 6.5312 2.5814 -0.3072 10 6 7.6983 2.7229 -0.9661 11 8 7.7190 3.2567 -2.0584 12 6 8.9502 2.2250 -0.3647 13 6 10.1652 2.3649 -1.0488 14 8 10.1960 2.9581 -2.2683 15 6 11.3360 1.8936 -0.4735 16 6 12.6457 2.0405 -1.2043 17 8 12.7079 1.0870 -2.2669 18 14 14.0538 1.7444 -0.0210 19 6 11.3031 1.2901 0.7677 20 6 10.1039 1.1499 1.4473 21 6 10.0822 0.4897 2.8018 22 6 8.9320 1.6166 0.8928 23 6 4.1960 3.4042 0.1235 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8030 2.2371 0.8900 28 1 1.8030 2.2371 -0.8899 29 1 3.6703 2.2676 -2.1864 30 1 4.8881 1.0274 -1.6576 31 1 6.5148 2.1557 0.5643 32 1 10.3313 3.9151 -2.2369 33 1 12.7218 3.0474 -1.6148 34 1 12.6460 0.1675 -1.9742 35 1 15.3511 1.8857 -0.7297 36 1 13.9821 2.7093 1.1056 37 1 12.2174 0.9244 1.2112 38 1 10.2237 1.2438 3.5759 39 1 9.1227 -0.0063 2.9488 40 1 10.8842 -0.2461 2.8603 41 1 8.0001 1.5089 1.4280 42 1 4.5884 3.6586 1.1081 43 1 3.4591 4.1215 -0.2378 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16535148_13422088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:00 Heat of formation + Delta-G solvation = -58.961131 kcal Electronic energy + Delta-G solvation = -25135.512410 eV Core-core repulsion = 21467.469528 eV Total energy + Delta-G solvation = -3668.042882 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.83330 -40.80743 -39.13878 -37.99698 -37.53911 -34.72196 -33.10999 -32.77805 -30.58176 -29.72150 -27.67369 -26.82984 -26.80527 -25.48853 -23.66355 -22.05918 -21.62483 -20.34386 -19.53681 -18.44860 -17.88697 -17.47578 -17.28476 -16.78033 -16.66487 -16.21559 -15.95561 -15.91605 -15.45690 -15.43578 -15.10527 -14.89768 -14.82629 -14.62385 -14.39680 -14.16701 -14.00982 -13.76000 -13.67066 -13.44082 -13.36309 -13.06041 -12.93171 -12.61328 -12.18696 -12.15880 -12.03928 -11.68855 -11.59200 -11.30361 -10.93813 -10.83309 -10.36887 -10.20998 -10.01702 -9.54645 -8.66641 -5.10420 -0.35861 0.03216 0.66491 1.21915 1.58239 1.59559 1.75866 1.91444 2.03633 2.56859 3.16037 3.32278 3.36610 3.43985 3.48756 3.55711 3.62433 3.66600 3.75823 4.02170 4.06898 4.14141 4.14877 4.19876 4.25082 4.29098 4.39374 4.42499 4.53108 4.55080 4.60558 4.64006 4.67593 4.73018 4.76497 4.88807 4.94457 4.95157 5.00369 5.07897 5.15766 5.27937 5.52716 5.56637 6.44371 6.60685 6.75105 7.22825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.264 6.264 3 C -0.075 4.075 4 C -0.095 4.095 5 H 0.098 0.902 6 C -0.143 4.143 7 C 0.121 3.879 8 H 0.107 0.893 9 N -0.712 5.712 10 C 0.562 3.438 11 O -0.515 6.515 12 C -0.164 4.164 13 C 0.190 3.810 14 O -0.467 6.467 15 C -0.154 4.154 16 C -0.058 4.058 17 O -0.530 6.530 18 Si 0.683 3.317 19 C -0.073 4.073 20 C -0.097 4.097 21 C -0.117 4.117 22 C -0.067 4.067 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.399 0.601 32 H 0.393 0.607 33 H 0.111 0.889 34 H 0.377 0.623 35 H -0.251 1.251 36 H -0.255 1.255 37 H 0.137 0.863 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.077 0.923 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -1.105 7.010 7.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.038 6.038 3 C -0.223 4.223 4 C -0.115 4.115 5 H 0.116 0.884 6 C -0.181 4.181 7 C 0.016 3.984 8 H 0.125 0.875 9 N -0.364 5.364 10 C 0.350 3.650 11 O -0.390 6.390 12 C -0.168 4.168 13 C 0.143 3.857 14 O -0.277 6.277 15 C -0.155 4.155 16 C -0.169 4.169 17 O -0.335 6.335 18 Si 0.584 3.416 19 C -0.090 4.090 20 C -0.097 4.097 21 C -0.174 4.174 22 C -0.086 4.086 23 C -0.175 4.175 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.095 0.905 31 H 0.235 0.765 32 H 0.251 0.749 33 H 0.129 0.871 34 H 0.224 0.776 35 H -0.176 1.176 36 H -0.180 1.180 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.471 -1.261 6.006 6.155 hybrid contribution -1.443 1.628 0.347 2.203 sum -1.914 0.367 6.353 6.646 Atomic orbital electron populations 1.23396 0.94035 1.06736 1.04941 1.87034 1.07521 1.11228 1.98048 1.23428 0.99312 0.94573 1.05029 1.22382 0.92605 0.97460 0.99038 0.88383 1.23505 0.98488 0.99868 0.96267 1.21801 0.82711 0.97502 0.96415 0.87515 1.45572 1.06239 1.62083 1.22507 1.18025 0.83044 0.79046 0.84929 1.90843 1.86457 1.42244 1.19467 1.20367 0.93934 1.06244 0.96223 1.18224 0.89807 0.93611 0.84032 1.84813 1.94619 1.25467 1.22814 1.20739 0.96007 1.03104 0.95636 1.24943 0.99581 0.96131 0.96266 1.86585 1.96115 1.18438 1.32360 0.94975 0.77375 0.90668 0.78615 1.20980 0.97812 0.96985 0.93256 1.19804 0.92408 0.99875 0.97609 1.20844 1.03611 1.00402 0.92537 1.21125 0.98406 0.95806 0.93266 1.23403 0.97847 0.96268 1.00022 0.90472 0.90437 0.87968 0.89860 0.89802 0.88761 0.90537 0.76545 0.74857 0.87119 0.77632 1.17605 1.17975 0.84586 0.90653 0.90999 0.90750 0.85146 0.90392 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 10.76 101.05 1.09 1.24 16 2 S -0.26 -0.21 22.37 -107.50 -2.40 -2.61 16 3 C -0.08 0.11 5.78 37.16 0.21 0.32 16 4 C -0.10 0.17 3.53 -89.81 -0.32 -0.15 16 5 H 0.10 -0.16 8.13 -51.93 -0.42 -0.58 16 6 C -0.14 0.06 7.43 -25.92 -0.19 -0.13 16 7 C 0.12 -0.04 4.32 -67.12 -0.29 -0.33 16 8 H 0.11 0.15 7.46 -51.93 -0.39 -0.24 16 9 N -0.71 0.13 5.21 -54.06 -0.28 -0.16 16 10 C 0.56 1.67 7.76 -12.47 -0.10 1.57 16 11 O -0.51 -3.44 14.76 -16.59 -0.24 -3.69 16 12 C -0.16 -0.27 5.89 -104.85 -0.62 -0.89 16 13 C 0.19 0.48 6.69 -38.70 -0.26 0.22 16 14 O -0.47 -1.83 10.91 -40.55 -0.44 -2.27 16 15 C -0.15 -0.08 5.27 -104.52 -0.55 -0.63 16 16 C -0.06 -0.02 2.38 36.01 0.09 0.06 16 17 O -0.53 -0.88 12.88 -35.23 -0.45 -1.34 16 18 Si 0.68 -0.86 29.91 -169.99 -5.08 -5.95 16 19 C -0.07 0.10 8.30 -39.53 -0.33 -0.23 16 20 C -0.10 0.16 5.87 -104.67 -0.61 -0.45 16 21 C -0.12 0.45 10.00 36.01 0.36 0.81 16 22 C -0.07 0.07 9.18 -39.20 -0.36 -0.29 16 23 C -0.14 0.35 7.39 -25.92 -0.19 0.16 16 24 H 0.08 -0.15 8.14 -51.92 -0.42 -0.58 16 25 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 26 H 0.10 -0.17 8.14 -51.92 -0.42 -0.59 16 27 H 0.08 -0.17 8.14 -51.92 -0.42 -0.60 16 28 H 0.08 -0.15 7.84 -51.92 -0.41 -0.56 16 29 H 0.09 -0.06 7.90 -51.93 -0.41 -0.47 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.40 -1.07 6.73 -40.82 -0.27 -1.34 16 32 H 0.39 0.17 9.06 45.56 0.41 0.58 16 33 H 0.11 0.09 7.83 -51.93 -0.41 -0.32 16 34 H 0.38 -0.90 8.70 45.56 0.40 -0.50 16 35 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 36 H -0.26 -0.21 7.11 56.52 0.40 0.19 16 37 H 0.14 -0.53 5.10 -52.49 -0.27 -0.80 16 38 H 0.07 -0.32 8.14 -51.93 -0.42 -0.74 16 39 H 0.07 -0.32 8.08 -51.93 -0.42 -0.74 16 40 H 0.07 -0.35 8.08 -51.93 -0.42 -0.77 16 41 H 0.13 -0.49 6.40 -52.49 -0.34 -0.82 16 42 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 43 H 0.10 -0.32 8.10 -51.93 -0.42 -0.74 16 LS Contribution 367.22 15.07 5.53 5.53 Total: 0.00 -9.52 367.22 -10.97 -20.49 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: -5.52 Total: -11.31 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.07 Total: 1.29 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -0.28 Total: -0.16 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -1.14 Total: -7.29 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -5.08 Total: -5.95 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.40 Total: -2.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -9.52 -10.97 -20.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13422088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.472 kcal (2) G-P(sol) polarization free energy of solvation -9.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds