Wall clock time and date at job start Tue Mar 9 2021 13:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.81390 * 103.00264 * 2 1 4 4 C 1.52996 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.84876 * 316.19666 * 4 3 2 6 6 C 1.53785 * 113.61588 * 87.50501 * 4 3 2 7 7 C 1.53778 * 87.08218 * 139.98169 * 6 4 3 8 8 H 1.09000 * 113.69163 * 220.00424 * 7 6 4 9 9 N 1.46505 * 113.61237 * 89.11484 * 7 6 4 10 10 C 1.34779 * 119.99899 * 107.50572 * 9 7 6 11 11 O 1.21601 * 119.99867 * 359.97438 * 10 9 7 12 12 C 1.47516 * 120.00293 * 179.97438 * 10 9 7 13 13 C 1.39775 * 120.07338 * 179.97438 * 12 10 9 14 14 C 1.37629 * 119.93266 * 179.97438 * 13 12 10 15 15 C 1.50697 * 119.96465 * 180.02562 * 14 13 12 16 16 O 1.42902 * 109.47290 * 104.97836 * 15 14 13 17 17 Si 1.86301 * 109.46984 * 344.97583 * 15 14 13 18 18 C 1.39191 * 120.06745 * 359.97438 * 14 13 12 19 19 N 1.39055 * 119.93184 * 180.02562 * 18 14 13 20 20 C 1.46901 * 110.99854 * 240.00353 * 19 18 14 21 21 C 1.46898 * 110.99970 * 116.04517 * 19 18 14 22 22 C 1.39239 * 120.14251 * 0.29713 * 18 14 13 23 23 C 1.37593 * 120.06312 * 359.44832 * 22 18 14 24 24 C 1.53777 * 87.08489 * 334.56710 * 7 6 4 25 25 H 1.09002 * 109.47302 * 299.99951 * 1 2 3 26 26 H 1.09004 * 109.47509 * 59.99787 * 1 2 3 27 27 H 1.08999 * 109.47466 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47093 * 60.00042 * 3 2 1 29 29 H 1.09002 * 109.47610 * 299.99959 * 3 2 1 30 30 H 1.08991 * 113.61499 * 25.43183 * 6 4 3 31 31 H 1.09003 * 113.60756 * 254.52921 * 6 4 3 32 32 H 0.96996 * 120.00065 * 287.49817 * 9 7 6 33 33 H 1.08000 * 120.03157 * 359.95863 * 13 12 10 34 34 H 1.09000 * 109.47093 * 224.97872 * 15 14 13 35 35 H 0.96699 * 114.00359 * 59.99790 * 16 15 14 36 36 H 1.48504 * 109.99886 * 178.68340 * 17 15 14 37 37 H 1.48498 * 110.00276 * 300.00002 * 17 15 14 38 38 H 1.09002 * 109.47401 * 59.99571 * 20 19 18 39 39 H 1.09001 * 109.46874 * 299.99584 * 20 19 18 40 40 H 1.09004 * 109.46970 * 179.97438 * 20 19 18 41 41 H 1.09006 * 109.46770 * 179.97438 * 21 19 18 42 42 H 1.09001 * 109.47456 * 300.00115 * 21 19 18 43 43 H 1.09000 * 109.46814 * 60.00421 * 21 19 18 44 44 H 1.08002 * 119.96976 * 179.72444 * 22 18 14 45 45 H 1.08003 * 120.02921 * 180.27185 * 23 22 18 46 46 H 1.09002 * 113.61816 * 139.97825 * 24 7 6 47 47 H 1.08995 * 113.61622 * 270.88507 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7422 1.9398 0.0006 5 1 4.2442 1.2673 0.6962 6 6 4.3619 1.9482 -1.4068 7 6 5.2875 3.0700 -0.9071 8 1 5.4529 3.8601 -1.6396 9 7 6.5313 2.5809 -0.3071 10 6 7.6985 2.7224 -0.9660 11 8 7.7191 3.2556 -2.0587 12 6 8.9511 2.2304 -0.3617 13 6 10.1623 2.3759 -1.0440 14 6 11.3292 1.9164 -0.4772 15 6 12.6356 2.0734 -1.2119 16 8 13.3954 3.1252 -0.6132 17 14 12.2984 2.4890 -2.9964 18 6 11.3042 1.3078 0.7743 19 7 12.4850 0.8450 1.3445 20 6 12.4182 -0.6014 1.5928 21 6 12.7956 1.5774 2.5794 22 6 10.0985 1.1562 1.4541 23 6 8.9292 1.6182 0.8951 24 6 4.1962 3.4041 0.1235 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8031 2.2370 0.8900 29 1 1.8032 2.2371 -0.8900 30 1 3.6704 2.2675 -2.1864 31 1 4.8882 1.0271 -1.6575 32 1 6.5148 2.1553 0.5644 33 1 10.1823 2.8483 -2.0150 34 1 13.1982 1.1415 -1.1560 35 1 13.6081 2.9759 0.3182 36 1 13.5787 2.6777 -3.7247 37 1 11.5088 1.4028 -3.6305 38 1 12.2565 -1.1247 0.6504 39 1 11.5941 -0.8155 2.2733 40 1 13.3545 -0.9372 2.0385 41 1 13.7236 1.1951 3.0048 42 1 12.9084 2.6379 2.3543 43 1 11.9852 1.4421 3.2956 44 1 10.0817 0.6795 2.4231 45 1 7.9950 1.5043 1.4248 46 1 4.5886 3.6583 1.1082 47 1 3.4593 4.1214 -0.2377 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16535148_13422196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:02 Heat of formation + Delta-G solvation = 2.334934 kcal Electronic energy + Delta-G solvation = -26908.426574 eV Core-core repulsion = 23185.222731 eV Total energy + Delta-G solvation = -3723.203842 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85080 -40.97694 -39.47821 -37.70018 -37.30922 -34.85577 -32.79710 -31.49390 -30.41700 -29.60851 -28.59803 -26.93816 -26.70108 -26.28769 -24.02199 -23.26767 -22.89844 -21.32092 -20.31204 -19.18002 -18.03180 -17.88590 -17.39992 -17.29115 -16.64577 -16.46847 -16.14137 -16.08567 -15.89399 -15.40553 -15.39410 -15.18693 -15.07491 -14.98093 -14.58398 -14.29296 -14.19583 -13.97507 -13.88660 -13.63821 -13.49079 -13.33336 -13.10820 -13.01600 -12.80416 -12.73733 -12.63639 -12.21329 -12.09120 -11.50713 -11.41728 -11.29939 -11.22272 -11.04895 -10.88502 -10.21199 -10.10793 -9.80508 -9.63377 -8.69729 -4.93272 -0.42595 0.13371 0.74534 1.32093 1.53225 1.64441 1.68144 1.85211 1.98966 2.60425 2.71577 3.43227 3.49891 3.56504 3.58607 3.69547 3.74446 3.84048 3.89122 4.01216 4.10332 4.17776 4.28040 4.30025 4.33680 4.33998 4.39297 4.41550 4.45315 4.54021 4.57041 4.63950 4.70481 4.76303 4.79064 4.85457 4.86622 4.92762 4.97011 5.01117 5.02879 5.06163 5.12077 5.17231 5.19783 5.49698 5.57962 5.75168 6.18308 6.41920 6.62945 7.09890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.325 6.325 3 C -0.062 4.062 4 C -0.089 4.089 5 H 0.098 0.902 6 C -0.144 4.144 7 C 0.112 3.888 8 H 0.091 0.909 9 N -0.695 5.695 10 C 0.560 3.440 11 O -0.572 6.572 12 C -0.146 4.146 13 C -0.059 4.059 14 C -0.113 4.113 15 C -0.057 4.057 16 O -0.544 6.544 17 Si 0.773 3.227 18 C 0.126 3.874 19 N -0.528 5.528 20 C 0.025 3.975 21 C 0.023 3.977 22 C -0.152 4.152 23 C -0.059 4.059 24 C -0.118 4.118 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.414 0.586 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.373 0.627 36 H -0.286 1.286 37 H -0.275 1.275 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.152 0.848 45 H 0.159 0.841 46 H 0.091 0.909 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 -0.323 7.870 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.099 6.099 3 C -0.210 4.210 4 C -0.108 4.108 5 H 0.116 0.884 6 C -0.182 4.182 7 C 0.006 3.994 8 H 0.109 0.891 9 N -0.346 5.346 10 C 0.349 3.651 11 O -0.452 6.452 12 C -0.149 4.149 13 C -0.078 4.078 14 C -0.114 4.114 15 C -0.167 4.167 16 O -0.351 6.351 17 Si 0.676 3.324 18 C 0.032 3.968 19 N -0.250 5.250 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.172 4.172 23 C -0.078 4.078 24 C -0.158 4.158 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.121 0.879 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.252 0.748 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.223 0.777 36 H -0.213 1.213 37 H -0.201 1.201 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.169 0.831 45 H 0.177 0.823 46 H 0.110 0.890 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.960 -0.745 5.382 6.187 hybrid contribution -0.868 -0.660 1.780 2.087 sum -3.828 -1.405 7.162 8.242 Atomic orbital electron populations 1.23398 0.91814 1.07108 1.05731 1.87215 1.10204 1.14310 1.98189 1.23433 0.99414 0.92272 1.05858 1.22338 0.92406 0.98124 0.97932 0.88353 1.23500 0.98549 0.98869 0.97310 1.21896 0.82958 0.97228 0.97279 0.89107 1.45461 1.05615 1.60852 1.22697 1.18368 0.84205 0.78106 0.84465 1.90795 1.87347 1.45063 1.21970 1.19864 0.92816 1.05088 0.97158 1.21076 0.91126 0.96181 0.99371 1.20188 0.95434 1.00300 0.95482 1.25142 0.89762 0.93906 1.07908 1.86697 1.73892 1.44173 1.30305 0.92259 0.80629 0.88188 0.71298 1.18966 0.89905 0.95009 0.92964 1.59457 1.30709 1.05915 1.28878 1.22527 1.02803 0.85244 1.01562 1.22596 1.02058 0.99032 0.88603 1.21821 0.92241 1.01588 1.01527 1.21443 0.99716 0.93943 0.92698 1.23345 0.96731 0.95758 0.99942 0.89515 0.89774 0.87871 0.88673 0.89233 0.88542 0.92335 0.74818 0.84532 0.90239 0.77715 1.21251 1.20134 0.91951 0.93641 0.89402 0.89315 0.90770 0.93848 0.83076 0.82329 0.89005 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.38 10.76 113.37 1.22 1.60 16 2 S -0.32 -0.37 22.37 -56.49 -1.26 -1.63 16 3 C -0.06 0.28 5.78 71.98 0.42 0.69 16 4 C -0.09 0.46 3.53 -10.26 -0.04 0.42 16 5 H 0.10 -0.49 8.13 -2.39 -0.02 -0.51 16 6 C -0.14 0.23 7.43 31.12 0.23 0.47 16 7 C 0.11 -0.19 4.32 45.51 0.20 0.01 16 8 H 0.09 0.23 7.46 -2.39 -0.02 0.21 16 9 N -0.69 1.12 5.21 -443.21 -2.31 -1.18 16 10 C 0.56 2.96 7.76 86.69 0.67 3.64 16 11 O -0.57 -7.72 15.94 -4.03 -0.06 -7.78 16 12 C -0.15 -0.39 5.88 -20.08 -0.12 -0.50 16 13 C -0.06 -0.30 8.19 22.50 0.18 -0.12 16 14 C -0.11 -0.41 5.28 -19.78 -0.10 -0.51 16 15 C -0.06 -0.27 2.29 71.24 0.16 -0.11 16 16 O -0.54 -2.88 12.65 -148.98 -1.89 -4.76 16 17 Si 0.77 4.66 30.17 68.60 2.07 6.73 16 18 C 0.13 0.00 4.66 38.47 0.18 0.18 16 19 N -0.53 1.22 3.70 -745.08 -2.76 -1.54 16 20 C 0.02 -0.11 9.33 127.69 1.19 1.08 16 21 C 0.02 -0.13 9.09 127.69 1.16 1.03 16 22 C -0.15 0.52 8.53 22.36 0.19 0.71 16 23 C -0.06 0.21 9.53 22.50 0.21 0.42 16 24 C -0.12 0.86 7.39 31.12 0.23 1.09 16 25 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 29 H 0.09 -0.47 7.85 -2.39 -0.02 -0.49 16 30 H 0.10 -0.20 7.90 -2.39 -0.02 -0.22 16 31 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 32 H 0.41 -3.16 6.72 -92.71 -0.62 -3.78 16 33 H 0.14 0.84 4.70 -2.91 -0.01 0.83 16 34 H 0.08 0.37 7.78 -2.39 -0.02 0.35 16 35 H 0.37 0.27 7.47 -74.06 -0.55 -0.28 16 36 H -0.29 -3.22 7.11 99.48 0.71 -2.52 16 37 H -0.28 -2.69 7.11 99.48 0.71 -1.99 16 38 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.05 -0.28 7.08 -2.39 -0.02 -0.30 16 40 H 0.09 -0.54 8.12 -2.38 -0.02 -0.56 16 41 H 0.09 -0.67 8.12 -2.38 -0.02 -0.69 16 42 H 0.07 -0.42 7.41 -2.39 -0.02 -0.43 16 43 H 0.04 -0.31 7.33 -2.39 -0.02 -0.32 16 44 H 0.15 -1.16 6.99 -2.91 -0.02 -1.18 16 45 H 0.16 -1.65 6.39 -2.91 -0.02 -1.67 16 46 H 0.09 -0.86 8.14 -2.39 -0.02 -0.87 16 47 H 0.11 -1.00 8.10 -2.39 -0.02 -1.02 16 Total: 0.00 -17.12 388.54 -0.37 -17.49 By element: Atomic # 1 Polarization: -17.27 SS G_CDS: -0.15 Total: -17.42 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.99 Total: 10.10 kcal Atomic # 7 Polarization: 2.35 SS G_CDS: -5.07 Total: -2.72 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.95 Total: -12.54 kcal Atomic # 14 Polarization: 4.66 SS G_CDS: 2.07 Total: 6.73 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -1.26 Total: -1.63 kcal Total: -17.12 -0.37 -17.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16535148_13422196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.829 kcal (2) G-P(sol) polarization free energy of solvation -17.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds